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Conserved domains on  [gi|446738146|ref|WP_000815402|]
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MULTISPECIES: DUF2483 family protein [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2483 super family cl11261
Hypothetical protein of unknown function (DUF2483); This is a family of proteins found in ...
 1-72 6.80e-23

Hypothetical protein of unknown function (DUF2483); This is a family of proteins found in bacteriophage particularly of the SA bacteriophages 11, Mu50B, family, homologous to phi-ETA orf16.


The actual alignment was detected with superfamily member pfam10656:

Pssm-ID: 371183  Cd Length: 72  Bit Score: 82.53  E-value: 6.80e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446738146   1 MKQTVTYIIRHRDMPIYITNKPTDNNSDVSYSTNRNRAREFNGMEEASINMDYHKAIKKTVTETIEYEEVEH 72
Cdd:pfam10656  1 MKQTVTYLIKHKDENLFITNRPTEVNDTVKYSTDMRDAREFDGLDKTVIDMSKHKAIKKTVTETIEYEKVEH 72
 
Name Accession Description Interval E-value
DUF2483 pfam10656
Hypothetical protein of unknown function (DUF2483); This is a family of proteins found in ...
 1-72 6.80e-23

Hypothetical protein of unknown function (DUF2483); This is a family of proteins found in bacteriophage particularly of the SA bacteriophages 11, Mu50B, family, homologous to phi-ETA orf16.


Pssm-ID: 371183  Cd Length: 72  Bit Score: 82.53  E-value: 6.80e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446738146   1 MKQTVTYIIRHRDMPIYITNKPTDNNSDVSYSTNRNRAREFNGMEEASINMDYHKAIKKTVTETIEYEEVEH 72
Cdd:pfam10656  1 MKQTVTYLIKHKDENLFITNRPTEVNDTVKYSTDMRDAREFDGLDKTVIDMSKHKAIKKTVTETIEYEKVEH 72
 
Name Accession Description Interval E-value
DUF2483 pfam10656
Hypothetical protein of unknown function (DUF2483); This is a family of proteins found in ...
 1-72 6.80e-23

Hypothetical protein of unknown function (DUF2483); This is a family of proteins found in bacteriophage particularly of the SA bacteriophages 11, Mu50B, family, homologous to phi-ETA orf16.


Pssm-ID: 371183  Cd Length: 72  Bit Score: 82.53  E-value: 6.80e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446738146   1 MKQTVTYIIRHRDMPIYITNKPTDNNSDVSYSTNRNRAREFNGMEEASINMDYHKAIKKTVTETIEYEEVEH 72
Cdd:pfam10656  1 MKQTVTYLIKHKDENLFITNRPTEVNDTVKYSTDMRDAREFDGLDKTVIDMSKHKAIKKTVTETIEYEKVEH 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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