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Conserved domains on  [gi|446719768|ref|WP_000797081|]
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MULTISPECIES: flagellar biosynthesis protein FlhB [Salmonella]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
flhB super family cl19167
flagellar type III secretion system protein FlhB;
1-383 0e+00

flagellar type III secretion system protein FlhB;


The actual alignment was detected with superfamily member PRK12468:

Pssm-ID: 473144  Cd Length: 386  Bit Score: 594.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILG 80
Cdd:PRK12468   1 MAEDSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHFDHSMVSNDKQMLR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  81 QIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT 160
Cdd:PRK12468  81 QIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 161 GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 240
Cdd:PRK12468 161 GLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 241 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLAR 320
Cdd:PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLAR 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446719768 321 ALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRPPQPENLPVPEALDFMNEKNTDG 383
Cdd:PRK12468 321 ALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLIPKKPEHLPVPEALDFATESETKS 383
 
Name Accession Description Interval E-value
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
1-383 0e+00

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 594.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILG 80
Cdd:PRK12468   1 MAEDSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHFDHSMVSNDKQMLR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  81 QIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT 160
Cdd:PRK12468  81 QIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 161 GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 240
Cdd:PRK12468 161 GLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 241 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLAR 320
Cdd:PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLAR 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446719768 321 ALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRPPQPENLPVPEALDFMNEKNTDG 383
Cdd:PRK12468 321 ALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLIPKKPEHLPVPEALDFATESETKS 383
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-352 0e+00

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 535.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILG 80
Cdd:COG1377    1 MAEEDDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  81 QIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT 160
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 161 GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 240
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 241 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLAR 320
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320
                        330       340       350
                 ....*....|....*....|....*....|..
gi 446719768 321 ALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKR 352
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
8-354 0e+00

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 515.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768    8 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIK 87
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   88 AAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHH 167
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  168 WPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQM 247
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  248 QRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAE 327
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320
                         330       340
                  ....*....|....*....|....*..
gi 446719768  328 IGQQIPGQLYAAVAEVLAWVWQLKRWR 354
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
8-347 2.25e-173

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 486.18  E-value: 2.25e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768    8 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHrmVNDPNLILGQIILLIK 87
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDR--AADPAALLALLLALLL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   88 AAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHH 167
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  168 WPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQM 247
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  248 QRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAE 327
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318
                         330       340
                  ....*....|....*....|
gi 446719768  328 IGQQIPGQLYAAVAEVLAWV 347
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
 
Name Accession Description Interval E-value
flhB PRK12468
flagellar biosynthesis protein FlhB; Reviewed
1-383 0e+00

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 171522  Cd Length: 386  Bit Score: 594.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILG 80
Cdd:PRK12468   1 MAEDSDQEKSEEPTASKLEKAREKGQIPRSRELTSMLMLGAGLTILWMSGESMARQLSAMVAQGLHFDHSMVSNDKQMLR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  81 QIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT 160
Cdd:PRK12468  81 QIGMLLRQTLLAMLPIFAGLVIVALAVPMLLGGVLFSGESIKFDLKRMSPVAGLKRMFSSQALAELLKAILKATLVGWVT 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 161 GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 240
Cdd:PRK12468 161 GLFLWHNWPDMMRLIAAPPVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 241 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLAR 320
Cdd:PRK12468 241 KGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQYNESKMSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLAR 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446719768 321 ALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQRPPQPENLPVPEALDFMNEKNTDG 383
Cdd:PRK12468 321 ALFRHSEVGQHIPATLYAAVAEVLAWVYQLKRWKREGGLIPKKPEHLPVPEALDFATESETKS 383
flhB PRK05702
flagellar type III secretion system protein FlhB;
1-359 0e+00

flagellar type III secretion system protein FlhB;


Pssm-ID: 235569  Cd Length: 359  Bit Score: 580.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILG 80
Cdd:PRK05702   1 MAEDDDDEKTEEPTPKKLEKAREKGQVPRSRELNTAASLLAGLVVLWFFGPSLARRLSGMLRALFSFDREIIFDPNDVLS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  81 QIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT 160
Cdd:PRK05702  81 LFLLLLLEALLALLPILLLLVLAALLAPVLQGGLLFSPKALKPKFSKLNPLKGLKRMFSAQGLVELLKSLLKVLLVGGVA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 161 GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 240
Cdd:PRK05702 161 YFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 241 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLAR 320
Cdd:PRK05702 241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDRGKMAAPVVVAKGVDEVALKIREIAREHNVPIVENPPLAR 320
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 446719768 321 ALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKRWRLAGGQ 359
Cdd:PRK05702 321 ALYATVEIGQEIPEELYKAVAEVLAYVYQLKRWRKGGGQ 359
FlhB COG1377
Flagellar biosynthesis protein FlhB [Cell motility];
1-352 0e+00

Flagellar biosynthesis protein FlhB [Cell motility];


Pssm-ID: 440987  Cd Length: 352  Bit Score: 535.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILG 80
Cdd:COG1377    1 MAEEDDGEKTEEPTPKRLRDAREKGQVARSRELTTALVLLAGLLLLLFLGPSLAERLGELLRSLLSFARALALDPADLLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  81 QIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT 160
Cdd:COG1377   81 LLGALLLEALLALLPLLLVLALAALLANLLQGGFLFSTKALKPKFSRLNPISGLKRLFSLRALVELLKSLLKLLLVGGVA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 161 GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHV 240
Cdd:COG1377  161 YLVLRGELPELLALAALPLAAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWEHEKKLRMTKQEVKDEHKESEGDPEV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 241 KGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLAR 320
Cdd:COG1377  241 KGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALKYDPGKMGAPVVVAKGADEVALRIREIAREHGVPIVENPPLAR 320
                        330       340       350
                 ....*....|....*....|....*....|..
gi 446719768 321 ALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKR 352
Cdd:COG1377  321 ALYATVEVGQEIPEELYQAVAEVLAYVYQLKR 352
flhB TIGR00328
flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from ...
8-354 0e+00

flagellar biosynthetic protein FlhB; FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 129428  Cd Length: 347  Bit Score: 515.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768    8 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIK 87
Cdd:TIGR00328   1 EKTEEPTPKKLRKAREEGNVPKSREVNSAAVLLAGVLSLLFFGDGLADLLVVLMSFFLSFETSDILNLGSLVGIFFQSIR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   88 AAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHH 167
Cdd:TIGR00328  81 EVLLLLLPIFVLLLVVGVLSNIAQFGFLFTTKPLKPKFSKINPIKGLKRLFSLQSLVELLKSLLKVFLVSFVAYFVLRNS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  168 WPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQM 247
Cdd:TIGR00328 161 LGELLSLSLYSLVQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  248 QRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAE 327
Cdd:TIGR00328 241 QREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQVE 320
                         330       340
                  ....*....|....*....|....*..
gi 446719768  328 IGQQIPGQLYAAVAEVLAWVWQLKRWR 354
Cdd:TIGR00328 321 IGQEIPPELYKAVAEVLAYVYKLKKKR 347
Bac_export_2 pfam01312
FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, ...
8-347 2.25e-173

FlhB HrpN YscU SpaS Family; This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.


Pssm-ID: 460157  Cd Length: 338  Bit Score: 486.18  E-value: 2.25e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768    8 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHrmVNDPNLILGQIILLIK 87
Cdd:pfam01312   1 EKTEEPTPKKLRDAREKGQVAKSRELTSAAVLLAGLLALLFLGPFLLERLAELFRSVLSFDR--AADPAALLALLLALLL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   88 AAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYLWHH 167
Cdd:pfam01312  79 ELLLLLLPLLLVLLLAALLANLLQVGFLFSTKALKPKFSKLNPISGLKRIFSLRSLVELLKSLLKVAVVGAVAYLVLRGN 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  168 WPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKIRQM 247
Cdd:pfam01312 159 LPELLALADLPLEAALALLGDLLLKLLLAVLLALLVIAAIDYPYQRWQFEKKLKMTKQEVKDEYKESEGDPEIKGRIRQL 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  248 QRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAE 327
Cdd:pfam01312 239 QREMARRRMMAEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGADELALRIREIAREHGVPIVENPPLARALYATVE 318
                         330       340
                  ....*....|....*....|
gi 446719768  328 IGQQIPGQLYAAVAEVLAWV 347
Cdd:pfam01312 319 VGQEIPEELYQAVAEVLAYV 338
PRK12772 PRK12772
fused FliR family export protein/FlhB family type III secretion system protein;
6-352 1.36e-94

fused FliR family export protein/FlhB family type III secretion system protein;


Pssm-ID: 237199 [Multi-domain]  Cd Length: 609  Bit Score: 294.66  E-value: 1.36e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   6 DDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRM-VNDPNLILGQIIL 84
Cdd:PRK12772 262 SDDKTEEATPKKKSDARKKGQIAKSKELALAITLLACTLVLSALGGYVANTLKETMIYFLNNYLNMnLNYNSLNSLAIIT 341
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  85 LIKAAMMaLLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYL 164
Cdd:PRK12772 342 LLRVAKI-FLPVALPIMVFGVAANLLQTGFLFTKEPLKPDLKKLNPINGFKRMFSMRSVMELLKDLTIITIVGIVGYKFL 420
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 165 WHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVKGKI 244
Cdd:PRK12772 421 QDNYLDILNLGNLYLPYIITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKI 500
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 245 RQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYR 324
Cdd:PRK12772 501 KQKQREMAMQRMMQEVPKATVVVTNPTHIAVALKYEEGKDEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIYK 580
                        330       340
                 ....*....|....*....|....*...
gi 446719768 325 HAEIGQQIPGQLYAAVAEVLAWVWQLKR 352
Cdd:PRK12772 581 KVEIDQEIPQDMYQAVAEILAIVYKLKK 608
EscU COG4792
Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and ...
1-350 9.44e-88

Type III secretory pathway, EscU/YscU component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443821  Cd Length: 344  Bit Score: 268.69  E-value: 9.44e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEEsdddKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLhfdhRMVNDP--NLI 78
Cdd:COG4792    1 MSSE----KTEQPTPKKLRDARKKGQVAKSKDIVSAVQLLALLGYLLLEGDALVEHLQALILLPA----QLLNLPfdEAL 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  79 LGQIILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGC 158
Cdd:COG4792   73 NQLLGALLELLLRLVLPLLAVLILATILSNVAQVGFLFATEAIKPKLEKINPVENLKRIFSLRSLVELLKSLLKVVLLGL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 159 VTGFYLWHHWPQMMRLmaesPIVAMGNALDLVG---------LCALLVVLGVIpmvgfDVFFQIFSHLKKLRMSRQDIRD 229
Cdd:COG4792  153 IFYYLLRGYLPTLVYL----PYCGLACAGPVVGallkwlwgvLLGAYLVFGLA-----DYLFQRYQFRKQLRMSKDEVKR 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 230 EFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHR 309
Cdd:COG4792  224 EYKDMEGDPEIKQKRRRLHREIQSGSLALNVKRSSVVVRNPTHIAVGLRYVPGETPLPVVLEKGEDARAQQIVKLAEEEG 303
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 446719768 310 VPTLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 350
Cdd:COG4792  304 VPVVENIPLARALYADAGLGEYIPEDLFEPVAEVLRLALLL 344
FlhB_rel_III TIGR01404
type III secretion protein, YscU/HrpY family; This model represents one of several families of ...
7-350 4.43e-85

type III secretion protein, YscU/HrpY family; This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130471  Cd Length: 342  Bit Score: 261.83  E-value: 4.43e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768    7 DDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGV-CIIWFGGESLARQLAGML----SAGLHFDHRMvndpnliLGQ 81
Cdd:TIGR01404   1 AEKTEKPTPKKLRDARKKGQVAKSKDLTSAVLLLAGFfYLLSLASVFEEMLIALLIlpldFDDQPFAYAL-------AQV 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   82 IILLIKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKstLVGCVTG 161
Cdd:TIGR01404  74 LSGLLQLILTVLLPLLAIVLLAGVLSGLLQVGFVLATEALKPDLSKLNPISGLKQIFSLRSLKELLKSILK--LVALALI 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  162 FYL-WHHWPQMMRLMAESPIvaMGNALDLVGLCALLV--VLGVIPMVG-FDVFFQIFSHLKKLRMSRQDIRDEFKESEGD 237
Cdd:TIGR01404 152 FYLfLKNYLKELFALPYCGL--DGLAPIVGELLKLLIlvCLGFFLVVGlADFAFQRYLFMKDLKMSKDEVKREYKEQEGD 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  238 PHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPP 317
Cdd:TIGR01404 230 PEIKSKRRELHQEILSEQLKSDVKRSTLVVANPTHIAIGIYYKPGETPLPLIICKGTDAQALAVRAYAEEAGIPVVRDIP 309
                         330       340       350
                  ....*....|....*....|....*....|...
gi 446719768  318 LARALYRHAEIGQQIPGQLYAAVAEVLAWVWQL 350
Cdd:TIGR01404 310 LARQLYRTARVGQYIPEELFEAVAELLRWLEQV 342
flhB PRK13109
flagellar biosynthesis protein FlhB; Reviewed
1-347 5.84e-66

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183864  Cd Length: 358  Bit Score: 213.51  E-value: 5.84e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEESD-DDKTEAPTPHRLEKAREEGQIPRSRE---LTSLLILLVGVCIIWFGG-ESLARQLAGMLSAGLHFDHRMVNDP 75
Cdd:PRK13109   1 MSDDTDkESKTEEATERKVRDAIEKGDIPVSREapvFASMLGLLIALAFFARGQaAQLTGDLAPLLDDPRGFSLETGADA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  76 NLILGQIILlikAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTL 155
Cdd:PRK13109  81 MLLLSRVAL---AAGRFLLPILLILAVCGLAASLLQNLPRFVLDRIQPKWSRISPMKGWTRIFGTSGQVEFLKSLFKFLS 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 156 VGCVTGFYLWHHWPQMMRLMAESPI----VAMGNALDLVGLcallVVLGVIPMVGFDVFFQIFSHLKKLRMSRQDIRDEF 231
Cdd:PRK13109 158 VSVVVLLLLRSERAKAVNAMFVDPSqlpeLILTVAIRLVSA----VAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEH 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 232 KESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVP 311
Cdd:PRK13109 234 KQAEGDPSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALRYERSENPAPLVVAKGQDLIALKIREIAEENGIP 313
                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 446719768 312 TLEAPPLARALYRHAEIGQQIPGQLYAAVAEVLAWV 347
Cdd:PRK13109 314 VIEDKPLARSLYDAVQVDQVIPAEFYRPVAQILYFL 349
PRK12721 PRK12721
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-344 4.46e-65

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 183700  Cd Length: 349  Bit Score: 210.68  E-value: 4.46e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEesdddKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLhfdhRMVNDPnLILG 80
Cdd:PRK12721   1 MSE-----KTEKPTEKKLRDARKKGQVVKSVEITSGVQLAALLLYFLLEGPSLVEAIIGLINSTI----QLLNKP-FLYA 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  81 QIILLIKAAMMALLPL--IAGVVLVALISPVMLG-GLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVG 157
Cdd:PRK12721  71 LTQILGAVLEVLLRFLlvLGAGLIVATVGTGIAQvGPLLASKAIGPKAEKINPVSNAKQIFSLKSVFELCKSLLKVVILS 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 158 CVTGFYLWHHWP---QMMRLMAES--PIVAMGNALDLVGLCALLVVLGVipmvgFDVFFQIFSHLKKLRMSRQDIRDEFK 232
Cdd:PRK12721 151 LIFAYLLHYYAPsfaYLPYCGAACglPVVSTLIFWLWGGLLACYLVFGI-----LDYSFQRYKIMKQLKMSKDDVKQEYK 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 233 ESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPT 312
Cdd:PRK12721 226 DSEGDPEIKQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPV 305
                        330       340       350
                 ....*....|....*....|....*....|..
gi 446719768 313 LEAPPLARALYRHAEIGQQIPGQLYAAVAEVL 344
Cdd:PRK12721 306 VENIPLARALFKEVECGDYIPETLFEPVAALL 337
PRK06298 PRK06298
type III secretion system protein; Validated
8-351 8.14e-49

type III secretion system protein; Validated


Pssm-ID: 180519  Cd Length: 356  Bit Score: 168.49  E-value: 8.14e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   8 DKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLhfdhRMVNDPNLILGQIILLIK 87
Cdd:PRK06298   3 EKTEKATPKRLRDARKKGQVAKSQDFPSAITFIVSMFLTFSLSSFFAKHLGSFLVSIF----KTAPTNHDPVVTVYYLKN 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  88 AAMMAL---LPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVTGFYL 164
Cdd:PRK06298  79 CLILILtasLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKKFNPIDNLKQKFKVKTLIELLKSILKISGAALILYIVL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 165 WHHWPQMMRLMAESPIVA-------MGNALDLVGLCALLVVLgvipmvgFDVFFQIFSHLKKLRMSRQDIRDEFKESEGD 237
Cdd:PRK06298 159 KNRVPLIIETAGVPPLVTaqifkeiLYKAVTSIGIFFLVVAV-------LDLVYQRHNFAKELKMEKFEVKQEFKDTEGN 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 238 PHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPP 317
Cdd:PRK06298 232 PEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIAEAEKYGVPIMRNVP 311
                        330       340       350
                 ....*....|....*....|....*....|....
gi 446719768 318 LARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLK 351
Cdd:PRK06298 312 LAHQLLDEGKELKFIPESTYEAIGEILLYITSLN 345
flhB PRK12773
flagellar biosynthesis protein FlhB; Reviewed
6-352 5.22e-41

flagellar biosynthesis protein FlhB; Reviewed


Pssm-ID: 183737  Cd Length: 646  Bit Score: 152.91  E-value: 5.22e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   6 DDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILL 85
Cdd:PRK12773 297 DEGRTEPGSERRRREEREKGNVPKSPELPAAVVLLAGVILVYLMGEYFFMRTYYILRKYIHGVGLRTDMSSESVTELLKN 376
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  86 IKAAMMALLPLIAGVVLV-ALISPVMLGGLIFSGKSLQPKFSKLNPlpGIKRMF-SAQTGAELLKAVLKSTLVGCVTGFY 163
Cdd:PRK12773 377 ASTDLFTLLWPLLGITLVgAIIGNVAQVGFIFTPRALSFNFSRIRP--NFKKVLpTRQTLFNLGKSLAKVGLIAWVSYII 454
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 164 LWHHWPQMmrLMAESPIVAMGNALDLVGLCALLVVLGVIPMVG--FDVFFQIFSHLKKLRMSRQDIRDEFKESEGDPHVK 241
Cdd:PRK12773 455 ISKDFFPI--LLSGEMGLEQAVALVMNSSFKIFLIVGIILLAIsiVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQ 532
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 242 GKIRQMQR-AAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLAR 320
Cdd:PRK12773 533 ARRRQLARdMMNKRKMLAKVPEADVVITNPTHFAVALEYKPGIHKAPIVIAKGVDDFALLIIRIARENGVPTVEDRLQAR 612
                        330       340       350
                 ....*....|....*....|....*....|..
gi 446719768 321 ALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKR 352
Cdd:PRK12773 613 GLYEEVELGAEVPQQFYRAIATILSRLESFRR 644
PRK08156 PRK08156
EscU/YscU/HrcU family type III secretion system export apparatus switch protein;
1-374 5.54e-38

EscU/YscU/HrcU family type III secretion system export apparatus switch protein;


Pssm-ID: 236168  Cd Length: 361  Bit Score: 139.76  E-value: 5.54e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768   1 MAEesdddKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVCIIWFGG--ESLARQLAGMLSAGlhfdhrmvNDPNLI 78
Cdd:PRK08156   1 MAN-----KTEKPTKKKLRDSAKKGQSFKSKDLITAVVLLGGIAYLVSFGsfSEFMSIYKRILADN--------FDINIG 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768  79 LGQIILLiKAAMMALLPLIAGVVLVALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLkSTLVGC 158
Cdd:PRK08156  68 DYFLAVM-IIFLKILIPFLLLCLLAGALPTLLQTRFVLATEAIKLNFSALNPVKGLKKIFSLRTVKEFVKALL-YLIVFA 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 159 VTGFYLWHHWPQMMRLMAESPIVAMGnaLDLVGLC--ALLVVLGV-IPMVGFDVFFQIFSHLKKLRMSRQDIRDEFKESE 235
Cdd:PRK08156 146 LTAYVFWKNYKKEIFSQLNGNIVGLI--VIWRELLvkLVLTFLACaLIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQE 223
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446719768 236 GDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEA 315
Cdd:PRK08156 224 GNPEIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIYFNPELAPIPFISVRETNQRALAVRAYAEKVGVPVVRD 303
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446719768 316 PPLARALYRHAEIGQQIPGQLYAAVAEVLAWVWQLKrwrlAGGQRPPQPENLPVPEALD 374
Cdd:PRK08156 304 IKLARRLYKTHRRYSFVSLEDLDEVLRLLIWLEQVE----NAGMGVPQPQENEVRSAEP 358
YlqH COG2257
Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, ...
275-352 8.01e-26

Type III secretion system substrate exporter, FlhB-like [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441858 [Multi-domain]  Cd Length: 95  Bit Score: 99.49  E-value: 8.01e-26
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446719768 275 VALQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHaEIGQQIPGQLYAAVAEVLAWVWQLKR 352
Cdd:COG2257   12 VALKYDGEKDNAPKVVAKGKGELAEKIIELAKEHGVPVHEDPELVELLSQL-DLGDEIPPELYQAVAEILAFIYRLDG 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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