|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3300 |
pfam11737 |
Protein of unknown function (DUF3300); This hypothetical bacterial gene product has a long ... |
74-373 |
4.83e-97 |
|
Protein of unknown function (DUF3300); This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.
Pssm-ID: 463336 Cd Length: 229 Bit Score: 296.13 E-value: 4.83e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 74 STAQIDQWVAPVALYPDSLLSQVLMASTYPANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGEN 153
Cdd:pfam11737 1 SQAQLDQLLAPIALYPDSLLSQVLMASTYPLEVVEAARWSRQNPGLKGDALVKAVEDQPWDPSVKALVAFPDVLAMMSED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 154 PQWVQNLGDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSTEQKVITTtkkavpvkqtvtapvipsntvltaspvitepaTT 233
Cdd:pfam11737 81 LDWTQKLGDAFLAQEDDVMDAVQRLRQKAYAAGNLKSNDQQKVTVE--------------------------------QT 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 234 VISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEPFIDSFVRGFGYSmgvaTTYALFSSIdwddddhdhhhh 313
Cdd:pfam11737 129 TIVIEPADPQVVYVPYYDPRVVYGPWWYPAYPPYYWPPPPGYAPGIYFGPGIAIG----AAGFLFGGF------------ 192
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 314 ddddyhhhdgghrdgnGWqHNGDnINIDVNNFNRITGEHLtdknmaWRHNPNYRNGVPYH 373
Cdd:pfam11737 193 ----------------DW-GNHD-VNINVNRNNNINRNHR------RSRRVVSAGANRWQ 228
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
388-617 |
1.85e-07 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 54.14 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 388 GGMSATQLPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAENYGSYDDFRDFSRRQPLTQQQKDAARQRY 467
Cdd:PRK12678 62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 468 QSASPEQRQAVRekmqtnpqiQQRRDAARERIQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQvfkekvq 547
Cdd:PRK12678 142 ARKAGEGGEQPA---------TEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDR------- 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 548 QRPLNQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERlseRGARRQER 617
Cdd:PRK12678 206 RDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR---RFRDRDRR 272
|
|
| DUF3106 |
pfam11304 |
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated ... |
465-544 |
9.23e-06 |
|
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Pssm-ID: 463257 [Multi-domain] Cd Length: 104 Bit Score: 44.90 E-value: 9.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 465 QRYQSASPEQRQAVREKMqtnpqiqqrrdaarERIQSASPEQRQAVREKMQT----NPQIQQRRDAARERIQSASPEQRQ 540
Cdd:pfam11304 35 ERYPKMTPEEQQRLQERM--------------TRWARLTPEQRRQARENYQQlrqlPPEQREALRARWEAYQALPPEQRQ 100
|
....
gi 446707140 541 VFKE 544
Cdd:pfam11304 101 ALAA 104
|
|
| DUF3106 |
pfam11304 |
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated ... |
467-576 |
6.04e-05 |
|
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Pssm-ID: 463257 [Multi-domain] Cd Length: 104 Bit Score: 42.20 E-value: 6.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 467 YQSASPEQRQA---VREKMQTNPQIQQRRDAAR-ERIQSASPEQRQAVREKMqtnpqiqqrrdaarERIQSASPEQRQVF 542
Cdd:pfam11304 1 WSELSPAQRQAlapLAERWNSLPPEQRRKWLEIaERYPKMTPEEQQRLQERM--------------TRWARLTPEQRRQA 66
|
90 100 110
....*....|....*....|....*....|....*...
gi 446707140 543 KEKVQQ-RPLNQQQRDNAR---QRVQSASPEQRQVFRE 576
Cdd:pfam11304 67 RENYQQlRQLPPEQREALRarwEAYQALPPEQRQALAA 104
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
480-614 |
9.57e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 9.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 480 EKMQTNPQIQQRRDAAReRIQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRdna 559
Cdd:pfam17380 386 ERQQKNERVRQELEAAR-KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQ--- 461
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 446707140 560 RQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERLSERGARR 614
Cdd:pfam17380 462 VERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRK 516
|
|
| CpxP |
COG3678 |
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, ... |
455-554 |
1.35e-04 |
|
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442894 [Multi-domain] Cd Length: 141 Bit Score: 42.27 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 455 LTQQQKDAARQRYQsaspEQRQAVREKMQtnpQIQQRRDAARERIQSASPEqRQAVREKMQTNPQIQQRRDAARERIQSA 534
Cdd:COG3678 45 LTEEQRQQIRAIRQ----QYRKQMRALRQ---QLREAREELRALLAADKFD-EAAVRALADKIAALRAQLAVERAEARNQ 116
|
90 100
....*....|....*....|....*
gi 446707140 535 -----SPEQRQVFKEKVQQRPLNQQ 554
Cdd:COG3678 117 mykvlTPEQRAKLAELMQERGEKHG 141
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
426-617 |
1.54e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 426 QRQA-AAQRF-------NEAENYGSYDDFRDF-SRRQPLTQQQKDAARQR---------YQSASPEQRQAVREKMQTNPQ 487
Cdd:TIGR02168 206 ERQAeKAERYkelkaelRELELALLVLRLEELrEELEELQEELKEAEEELeeltaelqeLEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 488 IQQRRDAAR-------ERIQSASPEQRQAVREKMQTNPQIQ---QRRDAARERIQSASPEQRQVFKEKVQQRplnqQQRD 557
Cdd:TIGR02168 286 LQKELYALAneisrleQQKQILRERLANLERQLEELEAQLEeleSKLDELAEELAELEEKLEELKEELESLE----AELE 361
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 558 NARQRVQSAspEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERLsERGARRQER 617
Cdd:TIGR02168 362 ELEAELEEL--ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-ERLEDRRER 418
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
473-616 |
1.81e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 44.56 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 473 EQRQAVREKMQTNPQIQQRRDAARERIQSAspEQRQAVREKMQTNPQI-------QQRR-DAARERIQSASPEQRQVFKE 544
Cdd:pfam15709 329 EQEKASRDRLRAERAEMRRLEVERKRREQE--EQRRLQQEQLERAEKMreeleleQQRRfEEIRLRKQRLEEERQRQEEE 406
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446707140 545 KVQQRPLNQQQRDNARQrvqsaspeQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERLSERGARRQE 616
Cdd:pfam15709 407 ERKQRLQLQAAQERARQ--------QQEEFRRKLQELQRKKQQEEAERAEAEKQRQKELEMQLAEEQKRLME 470
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
402-572 |
2.05e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 402 SQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEnygsyddfrdfsrrqpltqQQKDAARQRYQSASPEQRQAVREK 481
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELE-------------------AELAELSARYTPNHPDVIALRAQI 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 482 MQTNPQIQQRRDAARERIQSaspeQRQAVREKMQtnpQIQQRRDAARERIQSAsPEQRQVFKEKVQQRPLNQQQRDNARQ 561
Cdd:COG3206 301 AALRAQLQQEAQRILASLEA----ELEALQAREA---SLQAQLAQLEARLAEL-PELEAELRRLEREVEVARELYESLLQ 372
|
170
....*....|.
gi 446707140 562 RVQSASPEQRQ 572
Cdd:COG3206 373 RLEEARLAEAL 383
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
404-582 |
2.24e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 404 RQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAENYGSYDDFRDFSRRQPLTQQQKDAARQRYQSAspEQRQAVREKMQ 483
Cdd:COG4913 241 HEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL--EAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 484 TnpQIQQRRDAARERIQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSA-------SPEQRQVFKEKVQQRPLNQQQR 556
Cdd:COG4913 319 D--ALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALlaalglpLPASAEEFAALRAEAAALLEAL 396
|
170 180
....*....|....*....|....*.
gi 446707140 557 DNARQRVQSASPEQRQVFREKVQESR 582
Cdd:COG4913 397 EEELEALEEALAEAEAALRDLRRELR 422
|
|
| DUF3106 |
pfam11304 |
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated ... |
455-512 |
3.51e-04 |
|
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Pssm-ID: 463257 [Multi-domain] Cd Length: 104 Bit Score: 40.28 E-value: 3.51e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446707140 455 LTQQQKDAARQR---YQSASPEQRQAVREKMQT----NPQIQQRRDAARERIQSASPEQRQAVRE 512
Cdd:pfam11304 40 MTPEEQQRLQERmtrWARLTPEQRRQARENYQQlrqlPPEQREALRARWEAYQALPPEQRQALAA 104
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
474-616 |
3.70e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 474 QRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQAVREKMQTNPQIqqrrdaarERIQSASPEQRQVFKE-KVQQRPLN 552
Cdd:pfam12128 588 KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGEL--------EKASREETFARTALKNaRLDLRRLF 659
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446707140 553 QQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLnNEQRSAVRERLSERGARRQE 616
Cdd:pfam12128 660 DEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWL-EEQKEQKREARTEKQAYWQV 722
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
368-617 |
4.63e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 4.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 368 NGVPYHDQDMAKRFHQTDVNGGMSATQ--LPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEnyGSYDD 445
Cdd:PRK04863 430 CGLPDLTADNAEDWLEEFQAKEQEATEelLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELL--RRLRE 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 446 FRDFSRRQPLTQQQKDAARQRYQsaspEQRQAVR---------EKMQTNP-QIQQRRDAARERIQSASPEQRQAVREKMQ 515
Cdd:PRK04863 508 QRHLAEQLQQLRMRLSELEQRLR----QQQRAERllaefckrlGKNLDDEdELEQLQEELEARLESLSESVSEARERRMA 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 516 TNPQIQQrRDAARERIQSASPEQRQVF------KEKVQQRPLNQQQRDNARQRVQSASPEQRQVfREKVqESRPQRLnds 589
Cdd:PRK04863 584 LRQQLEQ-LQARIQRLAARAPAWLAAQdalarlREQSGEEFEDSQDVTEYMQQLLERERELTVE-RDEL-AARKQAL--- 657
|
250 260
....*....|....*....|....*...
gi 446707140 590 nhtvrlnNEQrsavRERLSERGARRQER 617
Cdd:PRK04863 658 -------DEE----IERLSQPGGSEDPR 674
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
407-617 |
5.11e-04 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.97 E-value: 5.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 407 AASQFQQRTHAAPVITRDTQRQAAAQRfneaenygsyddfRDFSRRQPLTQQQKDAARQRYQSASPEQRQAVREKMQTNP 486
Cdd:PRK12678 53 AAIKEARGGGAAAAAATPAAPAAAARR-------------AARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 487 QIQQRRdAARERIQSASPEQRQAVRE-KMQTNPQIQQRRDAARERIQSASPEQRQvfkEKVQQRPLNQQQRDNARQRVQS 565
Cdd:PRK12678 120 SAPEAA-QARERRERGEAARRGAARKaGEGGEQPATEARADAAERTEEEERDERR---RRGDREDRQAEAERGERGRREE 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 446707140 566 ASPEQRQVFREKVQESRPQRLNDSNhtvRLNNEQRSAVRERLSERGARRQER 617
Cdd:PRK12678 196 RGRDGDDRDRRDRREQGDRREERGR---RDGGDRRGRRRRRDRRDARGDDNR 244
|
|
| DUF3106 |
pfam11304 |
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated ... |
500-605 |
5.33e-04 |
|
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Pssm-ID: 463257 [Multi-domain] Cd Length: 104 Bit Score: 39.51 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 500 QSASPEQRQA---VREKMQTNPQIQQRRDAAR-ERIQSASPEQRQVFKEKVQQ-RPLNQQQRDNARQRVQSA---SPEQR 571
Cdd:pfam11304 2 SELSPAQRQAlapLAERWNSLPPEQRRKWLEIaERYPKMTPEEQQRLQERMTRwARLTPEQRRQARENYQQLrqlPPEQR 81
|
90 100 110
....*....|....*....|....*....|....
gi 446707140 572 QVFREKVQESRpqrlndsnhtvRLNNEQRSAVRE 605
Cdd:pfam11304 82 EALRARWEAYQ-----------ALPPEQRQALAA 104
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
444-616 |
5.78e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 444 DDFRDFSRRQPLTQQQKDAARQRYQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQrqavrekmqtnpqIQQR 523
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEE-------------LEQE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 524 RDAARERIQSASPEQ-RQVFKEKVQQRPLnQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSA 602
Cdd:COG4717 372 IAALLAEAGVEDEEElRAALEQAEEYQEL-KEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEE 450
|
170
....*....|....
gi 446707140 603 VRERLSERGARRQE 616
Cdd:COG4717 451 LREELAELEAELEQ 464
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
456-617 |
6.27e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.58 E-value: 6.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 456 TQQQKDAARQRYQSASPEQRQAVREKMQTNPQIQQ---RRDAARERIQSASpEQRQAVREKMQTNPQIQQRRDAARERIQ 532
Cdd:COG4372 57 AREELEQLEEELEQARSELEQLEEELEELNEQLQAaqaELAQAQEELESLQ-EEAEELQEELEELQKERQDLEQQRKQLE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 533 SASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERLSERGA 612
Cdd:COG4372 136 AQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRE 215
|
....*
gi 446707140 613 RRQER 617
Cdd:COG4372 216 LAEEL 220
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
457-617 |
6.87e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 42.21 E-value: 6.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 457 QQQKDAARQRyqsaspeQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQAVREKMQTNPQIQQRRDAARERiqsasp 536
Cdd:pfam13868 175 REEIEEEKER-------EIARLRAQQEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAR------ 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 537 EQRQVFKEKVQQRplnQQQRDNA-RQRVQSASPEQRQVFREKVQESRPQRL---NDSNHTVRLNNEQRSAVRERLSERGA 612
Cdd:pfam13868 242 EEQIELKERRLAE---EAEREEEeFERMLRKQAEDEEIEQEEAEKRRMKRLehrRELEKQIEEREEQRAAEREEELEEGE 318
|
....*
gi 446707140 613 RRQER 617
Cdd:pfam13868 319 RLREE 323
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
465-617 |
7.89e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 7.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 465 QRYQSASPEQRQAVREKMQTNPQIQQRRDAARE----RIQSASPEQRQAVREKMQTNPQIQQRRDAARER-IQSASPEQR 539
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREverrRKLEEAEKARQAEMDRQAAIYAEQERMAMEREReLERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 540 QVFKEKVQQRPLN--------------QQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRE 605
Cdd:pfam17380 359 KRELERIRQEEIAmeisrmrelerlqmERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVR 438
|
170
....*....|..
gi 446707140 606 RLSERGARRQER 617
Cdd:pfam17380 439 RLEEERAREMER 450
|
|
| CpxP |
COG3678 |
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, ... |
503-585 |
1.04e-03 |
|
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442894 [Multi-domain] Cd Length: 141 Bit Score: 39.58 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 503 SPEQRQAVREKMQTN--------PQIQQRRDAARERIQSASPEQRQVfKEKVQQRPLNQQQRDNARQRVQSA-----SPE 569
Cdd:COG3678 46 TEEQRQQIRAIRQQYrkqmralrQQLREAREELRALLAADKFDEAAV-RALADKIAALRAQLAVERAEARNQmykvlTPE 124
|
90
....*....|....*.
gi 446707140 570 QRQVFREKVQESRPQR 585
Cdd:COG3678 125 QRAKLAELMQERGEKH 140
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
451-607 |
1.72e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 41.18 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 451 RRQPLTQQQKDAARQRYQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQavreKMQTNPQIQQRrdaaRER 530
Cdd:pfam15558 39 RRDQKRQETLERERRLLLQQSQEQWQAEKEQRKARLGREERRRADRREKQVIEKESRW----REQAEDQENQR----QEK 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 531 IQSASPEQrqvfkekvQQRPLNQQQRDNARQRVQSASPEQ-RQVFREKVQE---SRPQRLNDSNHTVRLNNEQRSAVRER 606
Cdd:pfam15558 111 LERARQEA--------EQRKQCQEQRLKEKEEELQALREQnSLQLQERLEEachKRQLKEREEQKKVQENNLSELLNHQA 182
|
.
gi 446707140 607 L 607
Cdd:pfam15558 183 R 183
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
457-561 |
1.96e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.95 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 457 QQQKDAARQRYQSASPEQRQAvrekmqtnPQIQQRRDAARERIQSASPEQRQAVREKMQtnpQIQQRRDAARERIQSASP 536
Cdd:PRK09510 69 QQQKSAKRAEEQRKKKEQQQA--------EELQQKQAAEQERLKQLEKERLAAQEQKKQ---AEEAAKQAALKQKQAEEA 137
|
90 100
....*....|....*....|....*
gi 446707140 537 EQRQVFKEKVQQRPLNQQQRDNARQ 561
Cdd:PRK09510 138 AAKAAAAAKAKAEAEAKRAAAAAKK 162
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
403-617 |
2.15e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 403 QRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAENygsydDFRDFSRRQPLTQQQKDAARQRYQSASPEQRQAVREKM 482
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQA-----EEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 483 QtnpqIQQRRDAARERIQSAspEQRQAVREKmqtnpqiqQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQR 562
Cdd:COG1196 327 E----LEEELEELEEELEEL--EEELEEAEE--------ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446707140 563 VQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERLSERGARRQER 617
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
474-616 |
2.16e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 474 QRQAVREKMQTnpqIQQRRDAARERIQSASpEQRQAVREKMQT-NPQIQQRRDAARERiQSASPEQRQVFKEkvqqrpLN 552
Cdd:PRK02224 510 RIERLEERRED---LEELIAERRETIEEKR-ERAEELRERAAElEAEAEEKREAAAEA-EEEAEEAREEVAE------LN 578
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446707140 553 QQQRDNARQRVQSASPEQRQVFREKVqESRPQRLNDSNHTVRLNNEQRsavRERLSERGARRQE 616
Cdd:PRK02224 579 SKLAELKERIESLERIRTLLAAIADA-EDEIERLREKREALAELNDER---RERLAEKRERKRE 638
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
461-586 |
2.41e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 461 DAARQRYQSASPEQRQAVREKMQTNPQI--QQRRDA--------ARERIQSASPEQRQavrEKMQTNPQIQQRRDAARER 530
Cdd:pfam12128 607 DKAEEALQSAREKQAAAEEQLVQANGELekASREETfartalknARLDLRRLFDEKQS---EKDKKNKALAERKDSANER 683
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 446707140 531 IQSASPEQRQVFKEkvQQRPLNQQQRDNARQRVQsaspeqRQVFREKVQESRPQRL 586
Cdd:pfam12128 684 LNSLEAQLKQLDKK--HQAWLEEQKEQKREARTE------KQAYWQVVEGALDAQL 731
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
393-616 |
2.42e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 40.71 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 393 TQLPAPTRDSQRQAAA-----SQFQQRTHAAP---VITRDTQRQAAAQRFNEAenygsyddfRDFSRRQPLTQQQKDAAR 464
Cdd:pfam15709 289 SQVSIDGRSSPTQTFVvtgnmESEEERSEEDPskaLLEKREQEKASRDRLRAE---------RAEMRRLEVERKRREQEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 465 QRYQSASPEQRQavrEKMQTNPQIQQRRDAARERIQSASPEQRQAVREKMQTNPQIQqrRDAARERIQsaspEQRQVFKE 544
Cdd:pfam15709 360 QRRLQQEQLERA---EKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQ--LQAAQERAR----QQQEEFRR 430
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446707140 545 KVQQRPLNQQQRDNARqrvqSASPEQRQVFREKVQESRPQRLNDSNHTVRLN---NEQRSAVRERLSERGARRQE 616
Cdd:pfam15709 431 KLQELQRKKQQEEAER----AEAEKQRQKELEMQLAEEQKRLMEMAEEERLEyqrQKQEAEEKARLEAEERRQKE 501
|
|
| CpxP_like |
cd09916 |
CpxP component of the bacterial Cpx-two-component system and related proteins; This family ... |
455-549 |
2.47e-03 |
|
CpxP component of the bacterial Cpx-two-component system and related proteins; This family summarizes bacterial proteins related to CpxP, a periplasmic protein that forms part of a two-component system which acts as a global modulator of cell-envelope stress in gram-negative bacteria. CpxP aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Functioning as a dimer, it inhibits activation of the kinase CpxA, but also plays a vital role in the quality control system of P pili. It has been suggested that CpxP directly interacts with CpxA via its concave polar surface. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy suggests similar functions. A characteristic 5-residue sequence motif LTXXQ is found repeated twice in many members of this family.
Pssm-ID: 197366 [Multi-domain] Cd Length: 96 Bit Score: 37.58 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 455 LTQQQKDAARQRYQSASPeQRQAVREKMQtnpqiqQRRDAARERIQSASPEQRqAVREKMQTNPQIQQRRDAARERIQSA 534
Cdd:cd09916 4 LTDEQKAQIKAIRQAARA-QMKALREQMR------AAREELRALLTADTFDEA-AVRALAAEMAELQQELAVERAKARNQ 75
|
90 100
....*....|....*....|
gi 446707140 535 -----SPEQRQVFKEKVQQR 549
Cdd:cd09916 76 iyqvlTPEQRAKLNELFAKR 95
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
383-572 |
2.60e-03 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 40.62 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 383 QTDVNGGMSATQLPAPTRDSQRQAAASQFQQRTHAApviTRDTQRQAAAQRFNEAENYGSYD-------DFRDFSRRQPL 455
Cdd:pfam08017 99 QRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDA---ENRSQGNVLERRQRDAENRSQGNvlerrqrDAENRSQGNVL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 456 TQQQKDAaRQRYQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSAS 535
Cdd:pfam08017 176 ERRQRDA-ENKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNV 254
|
170 180 190
....*....|....*....|....*....|....*..
gi 446707140 536 PEQRQVFKEKVQQRPLNQQQRDNARQRVQSASPEQRQ 572
Cdd:pfam08017 255 LERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQ 291
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
422-615 |
2.93e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 422 TRDTQRQAAAQRFNEAENYGSYDDFRDFSRRQPLTQQQKDAARQRyqSASPEQRQAVREKMQTNPQIQQRRDAARERIQS 501
Cdd:PRK02224 513 RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR--EAAAEAEEEAEEAREEVAELNSKLAELKERIES 590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 502 ------------ASPEQRQAVREKMQtnpQIQQRRDAARERIQSASpEQRQVFKEKVQQRPLNQqqrdnARQRVQSASPE 569
Cdd:PRK02224 591 lerirtllaaiaDAEDEIERLREKRE---ALAELNDERRERLAEKR-ERKRELEAEFDEARIEE-----AREDKERAEEY 661
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 446707140 570 QRQVfREKVQESRPQRLNDSNHTVRLNNE--QRSAVRERLSERGARRQ 615
Cdd:PRK02224 662 LEQV-EEKLDELREERDDLQAEIGAVENEleELEELRERREALENRVE 708
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
423-585 |
4.06e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.41 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 423 RDTQRQAAAQRfNEAENYGSYDDFRDfSRRQplTQQQKDAARQRYQSASPEQRQAvrekmqtnpQIQQRRDAARERIQSA 502
Cdd:PRK10811 617 RNERRDTRDNR-TRREGRENREENRR-NRRQ--AQQQTAETRESQQAEVTEKART---------QDEQQQAPRRERQRRR 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 503 SPEQRQAVREKMQTNPQIQQRRDAAREriqsaspEQRQVFKEKVQQRPLNQQQR--DNARQRVQSASPEQRQVFREKVQE 580
Cdd:PRK10811 684 NDEKRQAQQEAKALNVEEQSVQETEQE-------ERVQQVQPRRKQRQLNQKVRieQSVAEEAVAPVVEETVAAEPVVQE 756
|
....*
gi 446707140 581 SRPQR 585
Cdd:PRK10811 757 VPAPR 761
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
451-571 |
4.08e-03 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 39.66 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 451 RRQPLTQQQKDAARQRYQ-------SASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQrqavrekmqtnpqiQQR 523
Cdd:PRK10927 118 QRQLLEQMQADMRQQPTQlvevpwnEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQ--------------QQT 183
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 446707140 524 RDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSASPEQR 571
Cdd:PRK10927 184 RTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQAAPVTR 231
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
453-554 |
4.12e-03 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 39.48 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 453 QPLTQQQKDAARQRYQSASPEQRQAVREKMQtnpQIQQRRDAARERIQsasPEQRQAVREKMQTnpQIQQRRDAARERIQ 532
Cdd:cd16269 191 QALTEKEKEIEAERAKAEAAEQERKLLEEQQ---RELEQKLEDQERSY---EEHLRQLKEKMEE--ERENLLKEQERALE 262
|
90 100
....*....|....*....|....*.
gi 446707140 533 SASPEQR----QVFKEKVQQrpLNQQ 554
Cdd:cd16269 263 SKLKEQEalleEGFKEQAEL--LQEE 286
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
442-615 |
4.87e-03 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 39.85 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 442 SYDDFRDFSRRQPLTQQQKDAaRQRYQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQAVREKMQTNPQIQ 521
Cdd:pfam08017 18 AMDSVGNQSQGNVLERRQRDA-ENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 522 QRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSASPEQRQVFRE-----KVQESRPQRLNDSNHTVRLN 596
Cdd:pfam08017 97 RRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAEnrsqgNVLERRQRDAENRSQGNVLE 176
|
170
....*....|....*....
gi 446707140 597 NEQRSAVRERLSERGARRQ 615
Cdd:pfam08017 177 RRQRDAENKSQGNVLERRQ 195
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
471-570 |
5.79e-03 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 39.28 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 471 SPEQRQAVrEKMQTNPQiQQRRDAARERIQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQVfkEKVQQRP 550
Cdd:PRK10927 115 TPEQRQLL-EQMQADMR-QQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQT--RTSQAAP 190
|
90 100
....*....|....*....|
gi 446707140 551 LNQQQRdnARQRVQSASPEQ 570
Cdd:PRK10927 191 VQAQPR--QSKPASTQQPYQ 208
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
422-616 |
6.16e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.94 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 422 TRDTQRQAAAQRFNEAENYGSYDDfrdfsrrqpLTQQQKDAARQRYQSASPEQRQAVRE---KMQTNPQIQQRRDAARER 498
Cdd:PRK04863 411 TRAIQYQQAVQALERAKQLCGLPD---------LTADNAEDWLEEFQAKEQEATEELLSleqKLSVAQAAHSQFEQAYQL 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 499 IQSASPE------QRQAvREKMqtnpqiqqrRDAARERIQSASPEQRQVFKEKVQQRpLNQQQRDNARQR---VQSASPE 569
Cdd:PRK04863 482 VRKIAGEvsrseaWDVA-RELL---------RRLREQRHLAEQLQQLRMRLSELEQR-LRQQQRAERLLAefcKRLGKNL 550
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446707140 570 QRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVRERLSERGARRQE 616
Cdd:PRK04863 551 DDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
400-615 |
7.92e-03 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 39.08 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 400 RDSQRQAAASQFQQRTHAapvITRDTQRQAAAQRFNEAENYGSYD-------DFRDFSRRQPLTQQQKDAaRQRYQSASP 472
Cdd:pfam08017 36 RDAENRSQGNVLERRQRD---AENRSQGNVLERRQRDAENRSQGNvlerrqrDAENRSQGNVLERRQRDA-ENRSQGNVL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 473 EQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKE-KVQQRPL 551
Cdd:pfam08017 112 ERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAEnKSQGNVL 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446707140 552 NQQQRDnARQRVQSASPEQRQVFRE-----KVQESRPQRLNDSNHTVRLNNEQRSAVRERLSERGARRQ 615
Cdd:pfam08017 192 ERRQRD-AENRSQGNVLERRQRDAEnrsqgNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQ 259
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-609 |
8.63e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.27 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 424 DTQRQAAAQRFNEAEN---YGSYDDFRDFSRRQpltQQQKDAARQRYQSAS-PEQRQAVREKMQTNPQIQQ----RRDAA 495
Cdd:TIGR02168 301 EQQKQILRERLANLERqleELEAQLEELESKLD---ELAEELAELEEKLEElKEELESLEAELEELEAELEelesRLEEL 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 496 RERIQSASPEQRQAVREKMQTNPQIQQ----------RRDAARERIQSASPEQRQVFKEKVQQR---------------- 549
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERlearlerledRRERLQQEIEELLKKLEEAELKELQAEleeleeeleelqeele 457
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707140 550 ------PLNQQQRDNARQRVQSASPEQRQV-FREKVQESRPQRLNDSNHTVR---LNNEQRSAVRERLSE 609
Cdd:TIGR02168 458 rleealEELREELEEAEQALDAAERELAQLqARLDSLERLQENLEGFSEGVKallKNQSGLSGILGVLSE 527
|
|
| |
