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Conserved domains on  [gi|446707005|ref|WP_000784351|]
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MULTISPECIES: YbgS-like family protein [Gammaproteobacteria]

Protein Classification

YbgS-like family protein( domain architecture ID 10623711)

YbgS-like family protein similar to Escherichia coli YbgS, a cysteine-containing protein biomarker with reactivity to 3,5-dimethoxy-4-hydroxycinnamic acid (sinapinic acid)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbgS pfam13985
YbgS-like protein; This family of proteins is functionally uncharacterized. The family ...
 3-126 2.27e-38

YbgS-like protein; This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.


:

Pssm-ID: 464062  Cd Length: 120  Bit Score: 125.42  E-value: 2.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707005    3 MTKLATLFLTATLSLASGAALaadsGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNND 82
Cdd:pfam13985   1 MKKLATLFLTAAMTLGSGAAL----AADSNNGQANSAADAGQVAPDARQNVAPNNVDNSDINNGSTNTNSTMTHSTMDSD 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 446707005   83 GMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ 126
Cdd:pfam13985  77 GMTKDEVHKNTMCKDGRCPDVNKKVETGTGTGGDVNTKTDGTTQ 120
 
Name Accession Description Interval E-value
YbgS pfam13985
YbgS-like protein; This family of proteins is functionally uncharacterized. The family ...
 3-126 2.27e-38

YbgS-like protein; This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.


Pssm-ID: 464062  Cd Length: 120  Bit Score: 125.42  E-value: 2.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707005    3 MTKLATLFLTATLSLASGAALaadsGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNND 82
Cdd:pfam13985   1 MKKLATLFLTAAMTLGSGAAL----AADSNNGQANSAADAGQVAPDARQNVAPNNVDNSDINNGSTNTNSTMTHSTMDSD 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 446707005   83 GMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ 126
Cdd:pfam13985  77 GMTKDEVHKNTMCKDGRCPDVNKKVETGTGTGGDVNTKTDGTTQ 120
 
Name Accession Description Interval E-value
YbgS pfam13985
YbgS-like protein; This family of proteins is functionally uncharacterized. The family ...
 3-126 2.27e-38

YbgS-like protein; This family of proteins is functionally uncharacterized. The family includes the YbgS protein from E. coli. This family of proteins is found in bacteria. Proteins in this family are approximately 130 amino acids in length. Some members of this family are annotated as homeobox protein, but this annotation cannot be verified.


Pssm-ID: 464062  Cd Length: 120  Bit Score: 125.42  E-value: 2.27e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707005    3 MTKLATLFLTATLSLASGAALaadsGAQTNNGQANAAADAGQVAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNND 82
Cdd:pfam13985   1 MKKLATLFLTAAMTLGSGAAL----AADSNNGQANSAADAGQVAPDARQNVAPNNVDNSDINNGSTNTNSTMTHSTMDSD 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 446707005   83 GMTKDEEHKNTMCKDGRCPDINKKVQTGDGINNDVDTKTDGTTQ 126
Cdd:pfam13985  77 GMTKDEVHKNTMCKDGRCPDVNKKVETGTGTGGDVNTKTDGTTQ 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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