NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446686421|ref|WP_000763767|]
View 

MULTISPECIES: general stress protein [Staphylococcus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YflT super family cl46343
Heat induced stress protein YflT domain; YflT is a heat induced protein. According to ...
 4-95 4.62e-06

Heat induced stress protein YflT domain; YflT is a heat induced protein. According to AlphaFold this domain is composed of a core of four beta strands that form a central beta sheet with alpha helices packed on both side. This family shows sequence similarity to pfam11821 which includes the ActD protein which forms an accessory component of the Alternative complex III which catalyzes the oxidation of membrane-bound quinol and the reduction of cytochrome c or an equivalent electron carrier. This suggests that members of this family may also be involved in forming larger redox complexes.


The actual alignment was detected with superfamily member pfam11181:

Pssm-ID: 480683  Cd Length: 99  Bit Score: 42.28  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446686421    4 ITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHD-SEISLISTSGT----FSDRMTKLLTGEDGEHAVLSRY 78
Cdd:pfam11181   3 VGVYETYEEAQKAVDELSDAGFPVDDIYIVGHDLDRVERITGrTDANRVALSGAleggWFGLFAGLFSGGDELRAKLSLL 82

                          90
                  ....*....|....*..
gi 446686421   79 NLAPDELEKYKQLILDD 95
Cdd:pfam11181  83 GLTEEEAEQYEEELDLG 99
 
Name Accession Description Interval E-value
YflT pfam11181
Heat induced stress protein YflT domain; YflT is a heat induced protein. According to ...
 4-95 4.62e-06

Heat induced stress protein YflT domain; YflT is a heat induced protein. According to AlphaFold this domain is composed of a core of four beta strands that form a central beta sheet with alpha helices packed on both side. This family shows sequence similarity to pfam11821 which includes the ActD protein which forms an accessory component of the Alternative complex III which catalyzes the oxidation of membrane-bound quinol and the reduction of cytochrome c or an equivalent electron carrier. This suggests that members of this family may also be involved in forming larger redox complexes.


Pssm-ID: 463237  Cd Length: 99  Bit Score: 42.28  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446686421    4 ITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHD-SEISLISTSGT----FSDRMTKLLTGEDGEHAVLSRY 78
Cdd:pfam11181   3 VGVYETYEEAQKAVDELSDAGFPVDDIYIVGHDLDRVERITGrTDANRVALSGAleggWFGLFAGLFSGGDELRAKLSLL 82

                          90
                  ....*....|....*..
gi 446686421   79 NLAPDELEKYKQLILDD 95
Cdd:pfam11181  83 GLTEEEAEQYEEELDLG 99
 
Name Accession Description Interval E-value
YflT pfam11181
Heat induced stress protein YflT domain; YflT is a heat induced protein. According to ...
 4-95 4.62e-06

Heat induced stress protein YflT domain; YflT is a heat induced protein. According to AlphaFold this domain is composed of a core of four beta strands that form a central beta sheet with alpha helices packed on both side. This family shows sequence similarity to pfam11821 which includes the ActD protein which forms an accessory component of the Alternative complex III which catalyzes the oxidation of membrane-bound quinol and the reduction of cytochrome c or an equivalent electron carrier. This suggests that members of this family may also be involved in forming larger redox complexes.


Pssm-ID: 463237  Cd Length: 99  Bit Score: 42.28  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446686421    4 ITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHD-SEISLISTSGT----FSDRMTKLLTGEDGEHAVLSRY 78
Cdd:pfam11181   3 VGVYETYEEAQKAVDELSDAGFPVDDIYIVGHDLDRVERITGrTDANRVALSGAleggWFGLFAGLFSGGDELRAKLSLL 82

                          90
                  ....*....|....*..
gi 446686421   79 NLAPDELEKYKQLILDD 95
Cdd:pfam11181  83 GLTEEEAEQYEEELDLG 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH