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Conserved domains on  [gi|446682582|ref|WP_000759928|]
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MULTISPECIES: fimbrial protein [Enterobacteriaceae]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
1-177 5.46e-30

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15220:

Pssm-ID: 445401  Cd Length: 178  Bit Score: 107.98  E-value: 5.46e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   1 MKKYII-PFVATTLMFSATTFAKDVDQGTLTIRGEVVDTTCYFVnGDSTTDIVVEDVVTSAMNQLINNEIYTLKTGSTSH 79
Cdd:PRK15220   1 MKRSLIaASVLSAVFMSAGAFAADEDMGELKINGKVVGTTCQFL-GTNSATIELNQVGVDRLANLNPGQIYTGYTNPTAM 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582  80 DLEIQCDGNTAPSIEVLASEF-DANNFTLNKGTAENIGFAIFLdDGTLTRMRPGLKTPLKDNG--SGQYFLNLNAQYART 156
Cdd:PRK15220  80 PLKVKCTQGAAPRISFSRSQFvDNMDITKNNGSANGAGFAVYY-DGTDVKPDPETGVTLNPNKfeNGVYTLNFSARYARV 158

                        170       180
                 ....*....|....*....|.
gi 446682582 157 SGNpVTKGSVESTVTIKISAD 177
Cdd:PRK15220 159 DND-VTSGDVESTLTLTVVTD 178
 
Name Accession Description Interval E-value
PRK15220 PRK15220
fimbrial protein YehD;
1-177 5.46e-30

fimbrial protein YehD;


Pssm-ID: 237928  Cd Length: 178  Bit Score: 107.98  E-value: 5.46e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   1 MKKYII-PFVATTLMFSATTFAKDVDQGTLTIRGEVVDTTCYFVnGDSTTDIVVEDVVTSAMNQLINNEIYTLKTGSTSH 79
Cdd:PRK15220   1 MKRSLIaASVLSAVFMSAGAFAADEDMGELKINGKVVGTTCQFL-GTNSATIELNQVGVDRLANLNPGQIYTGYTNPTAM 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582  80 DLEIQCDGNTAPSIEVLASEF-DANNFTLNKGTAENIGFAIFLdDGTLTRMRPGLKTPLKDNG--SGQYFLNLNAQYART 156
Cdd:PRK15220  80 PLKVKCTQGAAPRISFSRSQFvDNMDITKNNGSANGAGFAVYY-DGTDVKPDPETGVTLNPNKfeNGVYTLNFSARYARV 158

                        170       180
                 ....*....|....*....|.
gi 446682582 157 SGNpVTKGSVESTVTIKISAD 177
Cdd:PRK15220 159 DND-VTSGDVESTLTLTVVTD 178
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-175 6.19e-16

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 71.22  E-value: 6.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   1 MKKYIIPFVATTLMFSATTFAKDvdqGTLTIRGEVVDTTCYFVNGDSTTDIvvedvvtsAMNQLINNEIYTLKTGSTSHD 80
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAAD---GTVNFTGTVVAPTCTINTGSKDQTV--------DLGTVSTSDLNGVGSTSGPKP 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582  81 LEIQ---CDGNTAPSIEV----LASEFDANNFTLNK-GTAENIGFAIFLDDGTLTRM-RPGLKTPLKDNGSGQyfLNLNA 151
Cdd:COG3539   70 FSIKltnCDAGTSNSVKVtftgTADSANPGLLANTGsGGASGVGIQLLDSDGTPIPLgTPSSAVTLTSNGSAT--LPFYA 147

                        170       180
                 ....*....|....*....|....
gi 446682582 152 QYARTsGNPVTKGSVESTVTIKIS 175
Cdd:COG3539  148 RYVAT-GATVTAGSFNATATFTID 170
Fimbrial pfam00419
Fimbrial protein;
29-175 2.13e-03

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 36.64  E-value: 2.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   29 LTIRGEV--VDTTCyfvngdsttDIVVEDVVTSAMNQLINNEIYTLKTGSTSHDLEI--QCDGNT-APSIEV-LASEFDA 102
Cdd:pfam00419   1 INFTGTVtrVPATC---------KITAGTPIEVDFGQIPVNELNAGGEGSRQKPFSItlECSSGSsAVKVTVgLFGTADA 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446682582  103 NNFTL-----NKGTAENIGFAIFLDDGTLTRM-RPGLKTPLKDNGSGQYFLNLNAQYARTSGNPVTKGSVESTVTIKIS 175
Cdd:pfam00419  72 SSPNLlltgnGAGAATGVGIRLYDANGGALPPnNGTSSIPVSATAAVATGITFTASLVATTGGTPTAGDFNATATIVVD 150
 
Name Accession Description Interval E-value
PRK15220 PRK15220
fimbrial protein YehD;
1-177 5.46e-30

fimbrial protein YehD;


Pssm-ID: 237928  Cd Length: 178  Bit Score: 107.98  E-value: 5.46e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   1 MKKYII-PFVATTLMFSATTFAKDVDQGTLTIRGEVVDTTCYFVnGDSTTDIVVEDVVTSAMNQLINNEIYTLKTGSTSH 79
Cdd:PRK15220   1 MKRSLIaASVLSAVFMSAGAFAADEDMGELKINGKVVGTTCQFL-GTNSATIELNQVGVDRLANLNPGQIYTGYTNPTAM 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582  80 DLEIQCDGNTAPSIEVLASEF-DANNFTLNKGTAENIGFAIFLdDGTLTRMRPGLKTPLKDNG--SGQYFLNLNAQYART 156
Cdd:PRK15220  80 PLKVKCTQGAAPRISFSRSQFvDNMDITKNNGSANGAGFAVYY-DGTDVKPDPETGVTLNPNKfeNGVYTLNFSARYARV 158

                        170       180
                 ....*....|....*....|.
gi 446682582 157 SGNpVTKGSVESTVTIKISAD 177
Cdd:PRK15220 159 DND-VTSGDVESTLTLTVVTD 178
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-175 6.19e-16

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 71.22  E-value: 6.19e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   1 MKKYIIPFVATTLMFSATTFAKDvdqGTLTIRGEVVDTTCYFVNGDSTTDIvvedvvtsAMNQLINNEIYTLKTGSTSHD 80
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAAD---GTVNFTGTVVAPTCTINTGSKDQTV--------DLGTVSTSDLNGVGSTSGPKP 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582  81 LEIQ---CDGNTAPSIEV----LASEFDANNFTLNK-GTAENIGFAIFLDDGTLTRM-RPGLKTPLKDNGSGQyfLNLNA 151
Cdd:COG3539   70 FSIKltnCDAGTSNSVKVtftgTADSANPGLLANTGsGGASGVGIQLLDSDGTPIPLgTPSSAVTLTSNGSAT--LPFYA 147

                        170       180
                 ....*....|....*....|....
gi 446682582 152 QYARTsGNPVTKGSVESTVTIKIS 175
Cdd:COG3539  148 RYVAT-GATVTAGSFNATATFTID 170
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 1-175 1.07e-04

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 40.72  E-value: 1.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   1 MKKYIIPFVATTLMfSATTFAKDVDQGTLTIRGEVVDTTCyFVNGDSTTDIVVedvvtsaMNQLINNEIYTLKTGSTSHD 80
Cdd:PRK15209   1 MKKVVFALSALALT-STSVFAAESGDGTVKFTGEIVDAPC-VVSTDSQNQEVV-------LGQVKKSVFKAIGDKSSAKP 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582  81 LEIQ---CDGNTAPSIEVLASEF-DANNFTL-----NKGTAENIGFAIFLDDGTLTRMRPGLKTplKDNGSGQYFLNLNA 151
Cdd:PRK15209  72 FQIKledCDITTNKKVNVSFNGVgDADDSTLvsvstEAGAATGVGIGIYDNANTLVELNTGKST--TTLAAGQTVLYFTA 149

                        170       180
                 ....*....|....*....|....
gi 446682582 152 QYARTSgNPVTKGSVESTVTIKIS 175
Cdd:PRK15209 150 NYVSTK-DTVTTGYGNAEVDFNLS 172
Fimbrial pfam00419
Fimbrial protein;
29-175 2.13e-03

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 36.64  E-value: 2.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446682582   29 LTIRGEV--VDTTCyfvngdsttDIVVEDVVTSAMNQLINNEIYTLKTGSTSHDLEI--QCDGNT-APSIEV-LASEFDA 102
Cdd:pfam00419   1 INFTGTVtrVPATC---------KITAGTPIEVDFGQIPVNELNAGGEGSRQKPFSItlECSSGSsAVKVTVgLFGTADA 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446682582  103 NNFTL-----NKGTAENIGFAIFLDDGTLTRM-RPGLKTPLKDNGSGQYFLNLNAQYARTSGNPVTKGSVESTVTIKIS 175
Cdd:pfam00419  72 SSPNLlltgnGAGAATGVGIRLYDANGGALPPnNGTSSIPVSATAAVATGITFTASLVATTGGTPTAGDFNATATIVVD 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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