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Conserved domains on  [gi|446659244|ref|WP_000736590|]
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MULTISPECIES: DNZ54_00345 family protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DNZ54_00345_fm super family cl45808
DNZ54_00345 family phage region protein; Members of this uncharacterized protein family appear ...
 1-134 2.02e-24

DNZ54_00345 family phage region protein; Members of this uncharacterized protein family appear to be membrane proteins, and are found in bacteria encoded within prophage regions.


The actual alignment was detected with superfamily member NF038378:

Pssm-ID: 439671  Cd Length: 124  Bit Score: 90.84  E-value: 2.02e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446659244   1 MKKLSLSLMLNVSLALMLALSLIYPQSVAVSFVAAWAILATVICVVAGGVGVYAtEYVLERYGRElppeslaVKIVTALF 80
Cdd:NF038378   1 MKKLKTSWFFDLLLALLLLVSLVYPQSHAVNLVAAWAWFECLLCWVVGFAGLYA-CTLTGGDRKE-------VRAFLLRF 72

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446659244  81 LQPVPWRRRSVALVVMVATFisLVAAGWIFTALIYLVASVFFRLIRTACRQRFE 134
Cdd:NF038378  73 CRLPDKVPLRWYHRLFIAVF--LAGAGWKLTALFYLLTVVTFLMIRSELRQAIA 124
 
Name Accession Description Interval E-value
DNZ54_00345_fm NF038378
DNZ54_00345 family phage region protein; Members of this uncharacterized protein family appear ...
 1-134 2.02e-24

DNZ54_00345 family phage region protein; Members of this uncharacterized protein family appear to be membrane proteins, and are found in bacteria encoded within prophage regions.


Pssm-ID: 439671  Cd Length: 124  Bit Score: 90.84  E-value: 2.02e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446659244   1 MKKLSLSLMLNVSLALMLALSLIYPQSVAVSFVAAWAILATVICVVAGGVGVYAtEYVLERYGRElppeslaVKIVTALF 80
Cdd:NF038378   1 MKKLKTSWFFDLLLALLLLVSLVYPQSHAVNLVAAWAWFECLLCWVVGFAGLYA-CTLTGGDRKE-------VRAFLLRF 72

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446659244  81 LQPVPWRRRSVALVVMVATFisLVAAGWIFTALIYLVASVFFRLIRTACRQRFE 134
Cdd:NF038378  73 CRLPDKVPLRWYHRLFIAVF--LAGAGWKLTALFYLLTVVTFLMIRSELRQAIA 124
 
Name Accession Description Interval E-value
DNZ54_00345_fm NF038378
DNZ54_00345 family phage region protein; Members of this uncharacterized protein family appear ...
 1-134 2.02e-24

DNZ54_00345 family phage region protein; Members of this uncharacterized protein family appear to be membrane proteins, and are found in bacteria encoded within prophage regions.


Pssm-ID: 439671  Cd Length: 124  Bit Score: 90.84  E-value: 2.02e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446659244   1 MKKLSLSLMLNVSLALMLALSLIYPQSVAVSFVAAWAILATVICVVAGGVGVYAtEYVLERYGRElppeslaVKIVTALF 80
Cdd:NF038378   1 MKKLKTSWFFDLLLALLLLVSLVYPQSHAVNLVAAWAWFECLLCWVVGFAGLYA-CTLTGGDRKE-------VRAFLLRF 72

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446659244  81 LQPVPWRRRSVALVVMVATFisLVAAGWIFTALIYLVASVFFRLIRTACRQRFE 134
Cdd:NF038378  73 CRLPDKVPLRWYHRLFIAVF--LAGAGWKLTALFYLLTVVTFLMIRSELRQAIA 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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