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Conserved domains on  [gi|446657367|ref|WP_000734713|]
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MULTISPECIES: DUF1120 domain-containing protein [Salmonella]

Protein Classification

DUF1120 domain-containing protein( domain architecture ID 10015047)

DUF1120 domain-containing protein similar to Escherichia coli uncharacterized protein YhcF and protein GltF that is involved in induction of the so-called NTR enzymes in response to nitrogen deprivation, as well as in glutamate biosynthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15303 PRK15303
hypothetical protein; Provisional
 1-229 7.29e-133

hypothetical protein; Provisional


:

Pssm-ID: 185203  Cd Length: 229  Bit Score: 373.17  E-value: 7.29e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367   1 MKKLLIATSVVIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAP 80
Cdd:PRK15303   1 MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367  81 AKVGWTATDNHPDSVTSLTIDDATFRHQNNRIPNYQLGLGKTAGGINIGSFGLSMDLNNATADGIQTKMVVASSNNPDYW 160
Cdd:PRK15303  81 AKVGWTVTDNHGDSATTLTIDNATFGGQNNRIPNYQLGLGKTADGIKIGAYGLSIDANNSTADGVKTKMVASSDSNPGVW 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446657367 161 AIAGNEFVAITNTFPTVTTYSVGDENGPAAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL 229
Cdd:PRK15303 161 ALASNEYVALTNTFPTRTTYSVGDGNGPAAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL 229
 
Name Accession Description Interval E-value
PRK15303 PRK15303
hypothetical protein; Provisional
 1-229 7.29e-133

hypothetical protein; Provisional


Pssm-ID: 185203  Cd Length: 229  Bit Score: 373.17  E-value: 7.29e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367   1 MKKLLIATSVVIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAP 80
Cdd:PRK15303   1 MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367  81 AKVGWTATDNHPDSVTSLTIDDATFRHQNNRIPNYQLGLGKTAGGINIGSFGLSMDLNNATADGIQTKMVVASSNNPDYW 160
Cdd:PRK15303  81 AKVGWTVTDNHGDSATTLTIDNATFGGQNNRIPNYQLGLGKTADGIKIGAYGLSIDANNSTADGVKTKMVASSDSNPGVW 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446657367 161 AIAGNEFVAITNTFPTVTTYSVGDENGPAAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL 229
Cdd:PRK15303 161 ALASNEYVALTNTFPTRTTYSVGDGNGPAAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL 229
DUF1120 pfam06551
Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial ...
 27-132 8.12e-41

Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 368970  Cd Length: 116  Bit Score: 135.46  E-value: 8.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367   27 LKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAPAKVGWTATDNHPDSVTS--------- 97
Cdd:pfam06551   1 LKVTGELTPGACTPELSGGGVVDFGTHHVSALSPTKLNQLGTKNITLTITCTAPTKIAWTATDNRQDSIVAlndtsyiak 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 446657367   98 -LTIDDATFRHQNNRIPNYQLGLGKTAGGINIGSFG 132
Cdd:pfam06551  81 vYDILNDLNGGGYMSGTTNAFGLGKTPDGQKIGAYS 116
 
Name Accession Description Interval E-value
PRK15303 PRK15303
hypothetical protein; Provisional
 1-229 7.29e-133

hypothetical protein; Provisional


Pssm-ID: 185203  Cd Length: 229  Bit Score: 373.17  E-value: 7.29e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367   1 MKKLLIATSVVIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAP 80
Cdd:PRK15303   1 MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367  81 AKVGWTATDNHPDSVTSLTIDDATFRHQNNRIPNYQLGLGKTAGGINIGSFGLSMDLNNATADGIQTKMVVASSNNPDYW 160
Cdd:PRK15303  81 AKVGWTVTDNHGDSATTLTIDNATFGGQNNRIPNYQLGLGKTADGIKIGAYGLSIDANNSTADGVKTKMVASSDSNPGVW 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446657367 161 AIAGNEFVAITNTFPTVTTYSVGDENGPAAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL 229
Cdd:PRK15303 161 ALASNEYVALTNTFPTRTTYSVGDGNGPAAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL 229
PRK15302 PRK15302
hypothetical protein; Provisional
 1-229 2.54e-49

hypothetical protein; Provisional


Pssm-ID: 185202 [Multi-domain]  Cd Length: 229  Bit Score: 161.01  E-value: 2.54e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367   1 MKKLLIATSVVIGLSTSAQAVESTAVLKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAP 80
Cdd:PRK15302   1 MKKILLITAIAASFATTSVNADTTAVLKVTGQLVVGGCTPELSGGGVVDYGTIRLATLSATDVNQLGTKDVSLSISCPSA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367  81 AKVGWTATDNHPDS---VTSLTIDDATFRHQNNRIPNYQLGLGKTAGGINIGSFGLSMDLNNATADGIQTKMVVASSNNP 157
Cdd:PRK15302  81 TKAAWTITDDRADThpgASVISIANGDMTNGIVSDTTMSYGVGKTTEGVKIGAFSIYTDTANVTADGVKSDAISGTVDSP 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446657367 158 DYWAIAGNEFVAITNTFPTVTTYSVGDengPAAFTTATFPIRVAAAIQGTDTLAITDNTTLDGQATFTLVYL 229
Cdd:PRK15302 161 VWQKSTTGIIKNGNMEMFTVATKGTTE---PVPYTLAIFPLKTSLAIQNTATLAITDDTDLDGQATITLKYL 229
DUF1120 pfam06551
Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial ...
 27-132 8.12e-41

Protein of unknown function (DUF1120); This family consists of several hypothetical bacterial proteins of unknown function.


Pssm-ID: 368970  Cd Length: 116  Bit Score: 135.46  E-value: 8.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446657367   27 LKLTGVLTNGACIPELSDGGVVDFGTKAVSDLLPTETNQLGYKDITLTIQCLAPAKVGWTATDNHPDSVTS--------- 97
Cdd:pfam06551   1 LKVTGELTPGACTPELSGGGVVDFGTHHVSALSPTKLNQLGTKNITLTITCTAPTKIAWTATDNRQDSIVAlndtsyiak 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 446657367   98 -LTIDDATFRHQNNRIPNYQLGLGKTAGGINIGSFG 132
Cdd:pfam06551  81 vYDILNDLNGGGYMSGTTNAFGLGKTPDGQKIGAYS 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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