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Conserved domains on  [gi|446640986|ref|WP_000718332|]
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MULTISPECIES: IS66 family transposase, partial [Enterobacteriaceae]

Protein Classification

transposase domain-containing protein( domain architecture ID 10619504)

transposase domain-containing protein similar to Escherichia coli uncharacterized protein YjgZ

PubMed:  20615441

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_IS66_C pfam13817
IS66 C-terminal element;
3-40 2.19e-15

IS66 C-terminal element;


:

Pssm-ID: 433500  Cd Length: 39  Bit Score: 61.64  E-value: 2.19e-15
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 446640986   3 SLIGTCKLNGVEPESYLRYVLDVIAD-WPINRVGELLPW 40
Cdd:pfam13817  1 SLIETAKLNGLDPYAYLTDVLERLPDhHPAERLDELLPW 39
 
Name Accession Description Interval E-value
DDE_Tnp_IS66_C pfam13817
IS66 C-terminal element;
3-40 2.19e-15

IS66 C-terminal element;


Pssm-ID: 433500  Cd Length: 39  Bit Score: 61.64  E-value: 2.19e-15
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 446640986   3 SLIGTCKLNGVEPESYLRYVLDVIAD-WPINRVGELLPW 40
Cdd:pfam13817  1 SLIETAKLNGLDPYAYLTDVLERLPDhHPAERLDELLPW 39
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
 1-23 2.73e-07

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 44.11  E-value: 2.73e-07
                         10        20
                 ....*....|....*....|...
gi 446640986   1 LYSLIGTCKLNGVEPESYLRYVL 23
Cdd:NF033517 363 IYSLIETAKLNGLNPYAYLRDVL 385
 
Name Accession Description Interval E-value
DDE_Tnp_IS66_C pfam13817
IS66 C-terminal element;
3-40 2.19e-15

IS66 C-terminal element;


Pssm-ID: 433500  Cd Length: 39  Bit Score: 61.64  E-value: 2.19e-15
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 446640986   3 SLIGTCKLNGVEPESYLRYVLDVIAD-WPINRVGELLPW 40
Cdd:pfam13817  1 SLIETAKLNGLDPYAYLTDVLERLPDhHPAERLDELLPW 39
transpos_IS66 NF033517
IS66 family transposase; Members of this protein family are DDE transposases from the IS66 ...
 1-23 2.73e-07

IS66 family transposase; Members of this protein family are DDE transposases from the IS66 family insertion sequences, which typically consist of two accessary genes (TnpA and TnpB) and the third gene encoding the transposase.


Pssm-ID: 468053 [Multi-domain]  Cd Length: 388  Bit Score: 44.11  E-value: 2.73e-07
                         10        20
                 ....*....|....*....|...
gi 446640986   1 LYSLIGTCKLNGVEPESYLRYVL 23
Cdd:NF033517 363 IYSLIETAKLNGLNPYAYLRDVL 385
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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