NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446623505|ref|WP_000700851|]
View 

MULTISPECIES: DUF960 family protein [Bacillota]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF960 super family cl05581
Staphylococcal protein of unknown function (DUF960); This family consists of several ...
 4-102 2.20e-27

Staphylococcal protein of unknown function (DUF960); This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06124:

Pssm-ID: 399258  Cd Length: 94  Bit Score: 95.75  E-value: 2.20e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446623505    4 NRYITRGINESIPLDLQILLWHMVE--KKDNQPhTDYLHIFKLQEDENILSITHEQEQPTYKLEYHYTNYekNQNALPKK 81
Cdd:pfam06124   1 SRYATRGVVESLPLELQDSLWLIIDqmLKGVFP-LDYLQIFELSNNNGKLTIVHSQEVPEYELEYDLPFP--YDPEYPAK 77

                          90       100
                  ....*....|....*....|.
gi 446623505   82 VYVIreDDVDafYYVMLLPEE 102
Cdd:pfam06124  78 VYVI--DDGD--HETMLLPEE 94
 
Name Accession Description Interval E-value
DUF960 pfam06124
Staphylococcal protein of unknown function (DUF960); This family consists of several ...
 4-102 2.20e-27

Staphylococcal protein of unknown function (DUF960); This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.


Pssm-ID: 399258  Cd Length: 94  Bit Score: 95.75  E-value: 2.20e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446623505    4 NRYITRGINESIPLDLQILLWHMVE--KKDNQPhTDYLHIFKLQEDENILSITHEQEQPTYKLEYHYTNYekNQNALPKK 81
Cdd:pfam06124   1 SRYATRGVVESLPLELQDSLWLIIDqmLKGVFP-LDYLQIFELSNNNGKLTIVHSQEVPEYELEYDLPFP--YDPEYPAK 77

                          90       100
                  ....*....|....*....|.
gi 446623505   82 VYVIreDDVDafYYVMLLPEE 102
Cdd:pfam06124  78 VYVI--DDGD--HETMLLPEE 94
 
Name Accession Description Interval E-value
DUF960 pfam06124
Staphylococcal protein of unknown function (DUF960); This family consists of several ...
 4-102 2.20e-27

Staphylococcal protein of unknown function (DUF960); This family consists of several hypothetical proteins from several species of Staphylococcus. The function of this family is unknown.


Pssm-ID: 399258  Cd Length: 94  Bit Score: 95.75  E-value: 2.20e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446623505    4 NRYITRGINESIPLDLQILLWHMVE--KKDNQPhTDYLHIFKLQEDENILSITHEQEQPTYKLEYHYTNYekNQNALPKK 81
Cdd:pfam06124   1 SRYATRGVVESLPLELQDSLWLIIDqmLKGVFP-LDYLQIFELSNNNGKLTIVHSQEVPEYELEYDLPFP--YDPEYPAK 77

                          90       100
                  ....*....|....*....|.
gi 446623505   82 VYVIreDDVDafYYVMLLPEE 102
Cdd:pfam06124  78 VYVI--DDGD--HETMLLPEE 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH