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Conserved domains on  [gi|446622677|ref|WP_000700023|]
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MULTISPECIES: conjugal transfer protein TrbE [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TrbE super family cl23903
Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It ...
 1-71 1.48e-29

Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It contains four common motifs and one conserved domain.


The actual alignment was detected with superfamily member PRK13718:

Pssm-ID: 329162  Cd Length: 84  Bit Score: 99.48  E-value: 1.48e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446622677  1 MKIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLTKLLQHDNESS 71
Cdd:PRK13718  8 NRIIDFLIRLTITAIVISPVIYWSWDTVKETTADDMLAAVFVILYSGVLLFILYFFFSALTKLQKHDERKS 78
 
Name Accession Description Interval E-value
PRK13718 PRK13718
conjugal transfer protein TrbE; Provisional
 1-71 1.48e-29

conjugal transfer protein TrbE; Provisional


Pssm-ID: 172260  Cd Length: 84  Bit Score: 99.48  E-value: 1.48e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446622677  1 MKIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLTKLLQHDNESS 71
Cdd:PRK13718  8 NRIIDFLIRLTITAIVISPVIYWSWDTVKETTADDMLAAVFVILYSGVLLFILYFFFSALTKLQKHDERKS 78
TrbE pfam11100
Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It ...
 2-67 1.02e-25

Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It contains four common motifs and one conserved domain.


Pssm-ID: 314118  Cd Length: 66  Bit Score: 89.67  E-value: 1.02e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446622677   2 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLTKLLQHD 67
Cdd:pfam11100  1 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLTKLLQHD 66
 
Name Accession Description Interval E-value
PRK13718 PRK13718
conjugal transfer protein TrbE; Provisional
 1-71 1.48e-29

conjugal transfer protein TrbE; Provisional


Pssm-ID: 172260  Cd Length: 84  Bit Score: 99.48  E-value: 1.48e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446622677  1 MKIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLTKLLQHDNESS 71
Cdd:PRK13718  8 NRIIDFLIRLTITAIVISPVIYWSWDTVKETTADDMLAAVFVILYSGVLLFILYFFFSALTKLQKHDERKS 78
TrbE pfam11100
Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It ...
 2-67 1.02e-25

Conjugal transfer protein TrbE; TrbE is essential for conjugation and phage adsorption. It contains four common motifs and one conserved domain.


Pssm-ID: 314118  Cd Length: 66  Bit Score: 89.67  E-value: 1.02e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446622677   2 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLTKLLQHD 67
Cdd:pfam11100  1 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLTKLLQHD 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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