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Conserved domains on  [gi|446581381|ref|WP_000658727|]
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MULTISPECIES: XapX domain-containing protein [Gammaproteobacteria]

Protein Classification

XapX domain-containing protein( domain architecture ID 10008486)

XapX domain-containing protein is a DUF1427 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
XapX COG4317
Xanthosine utilization system component, XapX domain [Nucleotide transport and metabolism];
1-50 3.69e-11

Xanthosine utilization system component, XapX domain [Nucleotide transport and metabolism];


:

Pssm-ID: 443458  Cd Length: 53  Bit Score: 51.32  E-value: 3.69e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 446581381  1 MKEIILSSGIGFGIGAFFTLCRIPIPAPNVLPGVLSIVFMYIGYLVVKSI 50
Cdd:COG4317   1 MKEYLLSLLAGLLVGVLFSLLKVPSPAPPVLAGLVGILGILLGEQLVPWL 50
 
Name Accession Description Interval E-value
XapX COG4317
Xanthosine utilization system component, XapX domain [Nucleotide transport and metabolism];
1-50 3.69e-11

Xanthosine utilization system component, XapX domain [Nucleotide transport and metabolism];


Pssm-ID: 443458  Cd Length: 53  Bit Score: 51.32  E-value: 3.69e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 446581381  1 MKEIILSSGIGFGIGAFFTLCRIPIPAPNVLPGVLSIVFMYIGYLVVKSI 50
Cdd:COG4317   1 MKEYLLSLLAGLLVGVLFSLLKVPSPAPPVLAGLVGILGILLGEQLVPWL 50
XapX TIGR03510
XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 ...
 3-50 5.11e-10

XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins. [Unknown function, General]


Pssm-ID: 274620  Cd Length: 49  Bit Score: 48.30  E-value: 5.11e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446581381   3 EIILSSGIGFGIGAFFTLCRIPIPAPNVLPGVLSIVFMYIGYLVVKSI 50
Cdd:TIGR03510  1 EYLLSLLAGLLVGALYSLLDVPSPAPPVLAGLVGLLGMLLGEQAVPWV 48
 
Name Accession Description Interval E-value
XapX COG4317
Xanthosine utilization system component, XapX domain [Nucleotide transport and metabolism];
1-50 3.69e-11

Xanthosine utilization system component, XapX domain [Nucleotide transport and metabolism];


Pssm-ID: 443458  Cd Length: 53  Bit Score: 51.32  E-value: 3.69e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 446581381  1 MKEIILSSGIGFGIGAFFTLCRIPIPAPNVLPGVLSIVFMYIGYLVVKSI 50
Cdd:COG4317   1 MKEYLLSLLAGLLVGVLFSLLKVPSPAPPVLAGLVGILGILLGEQLVPWL 50
XapX TIGR03510
XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 ...
 3-50 5.11e-10

XapX domain; This model describes an uncharacterized small, hydrophobic protein of about 50 amino acids, found between the xapB and xapR genes of the E. coli xanthosine utilization system, and homologous regions in other small proteins, such as the N-terminal region of DUF1427 (pfam07235). We name this domain XapX, as it comprises the full length of the protein encoded between the genes for the well-studied XapB and XapR proteins. [Unknown function, General]


Pssm-ID: 274620  Cd Length: 49  Bit Score: 48.30  E-value: 5.11e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446581381   3 EIILSSGIGFGIGAFFTLCRIPIPAPNVLPGVLSIVFMYIGYLVVKSI 50
Cdd:TIGR03510  1 EYLLSLLAGLLVGALYSLLDVPSPAPPVLAGLVGLLGMLLGEQAVPWV 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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