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Conserved domains on  [gi|446542007|ref|WP_000619353|]
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MULTISPECIES: LeuA family protein [Staphylococcus]

Protein Classification

LeuA family protein( domain architecture ID 11414758)

LeuA family protein similar to Leptospira interrogans isopropylmalate/homocitrate/citramalate synthase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LeuA COG0119
Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; ...
2-312 6.10e-83

Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Isopropylmalate/homocitrate/citramalate synthases is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


:

Pssm-ID: 439889 [Multi-domain]  Cd Length: 452  Bit Score: 260.10  E-value: 6.10e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   2 IRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREILNNDK--EIVVLTRLDENEIN 79
Cdd:COG0119    4 IIIFDTTLRDGEQAPGVSFSVEEKLRIARLLDELGVDEIEAGFPAASPGDFEA--VRRIAELGLdaTICALARARRKDID 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  80 KILN-LKIHNLA-VKILLPISDLHIKEKLNFTSEyynERINKCLNMIK-VNQVAIDICF--EDATRCSLEKLCEYMEMIS 154
Cdd:COG0119   82 AALEaLKGAGVDrVHLFIKTSDLHVEYKLRKTRE---EVLEMAVEAVKyAKEHGLEVEFsaEDATRTDPDFLLEVLEAAI 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 155 KFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIE 234
Cdd:COG0119  159 EAGADRINLPDTVGGATPNEVADLIEELRERVPDVILSVHCHNDLGLAVANSLAAVEAGADQVEGTINGIGERAGNAALE 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446542007 235 EIIAILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKN 312
Cdd:COG0119  239 EVVMNLKLKYGVDTGIDLSKLTELSRLVSEITGLPVPPNKPIVGENAFAHESGIHQDGILKNPETYEPIDPEDVGRER 316
 
Name Accession Description Interval E-value
LeuA COG0119
Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; ...
2-312 6.10e-83

Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Isopropylmalate/homocitrate/citramalate synthases is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


Pssm-ID: 439889 [Multi-domain]  Cd Length: 452  Bit Score: 260.10  E-value: 6.10e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   2 IRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREILNNDK--EIVVLTRLDENEIN 79
Cdd:COG0119    4 IIIFDTTLRDGEQAPGVSFSVEEKLRIARLLDELGVDEIEAGFPAASPGDFEA--VRRIAELGLdaTICALARARRKDID 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  80 KILN-LKIHNLA-VKILLPISDLHIKEKLNFTSEyynERINKCLNMIK-VNQVAIDICF--EDATRCSLEKLCEYMEMIS 154
Cdd:COG0119   82 AALEaLKGAGVDrVHLFIKTSDLHVEYKLRKTRE---EVLEMAVEAVKyAKEHGLEVEFsaEDATRTDPDFLLEVLEAAI 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 155 KFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIE 234
Cdd:COG0119  159 EAGADRINLPDTVGGATPNEVADLIEELRERVPDVILSVHCHNDLGLAVANSLAAVEAGADQVEGTINGIGERAGNAALE 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446542007 235 EIIAILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKN 312
Cdd:COG0119  239 EVVMNLKLKYGVDTGIDLSKLTELSRLVSEITGLPVPPNKPIVGENAFAHESGIHQDGILKNPETYEPIDPEDVGRER 316
PRK00915 PRK00915
2-isopropylmalate synthase; Validated
86-316 1.40e-62

2-isopropylmalate synthase; Validated


Pssm-ID: 234864 [Multi-domain]  Cd Length: 513  Bit Score: 208.81  E-value: 1.40e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  86 IHnlavkILLPISDLHIKEKLNFTSEYYNERINKCLNMIKvnQVAIDICF--EDATRCSLEKLCEYMEMISKFPIRTVTF 163
Cdd:PRK00915  96 IH-----TFIATSPIHMEYKLKMSREEVLEMAVEAVKYAR--SYTDDVEFsaEDATRTDLDFLCRVVEAAIDAGATTINI 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 164 ADTVGCSTPFEYGNIFKEFVKKYPNI---TFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIAIL 240
Cdd:PRK00915 169 PDTVGYTTPEEFGELIKTLRERVPNIdkaIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMAL 248
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446542007 241 -TKKQI--VMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKNSKAV 316
Cdd:PRK00915 249 kTRKDIygVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGIHQDGVLKNRETYEIMTPESVGLKANRLV 327
DRE_TIM_IPMS cd07940
2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate ...
4-259 7.07e-54

2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163678  Cd Length: 268  Bit Score: 179.18  E-value: 7.07e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   4 IQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREILNNDK--EIVVLTRLDENEINKI 81
Cdd:cd07940    1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEA--VKRIAREVLnaEICGLARAVKKDIDAA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  82 LNL-------KIHnlavkILLPISDLHIKEKLNFTSEyynERINKCLNMIK-VNQVAIDICF--EDATRCSLEKLCEYME 151
Cdd:cd07940   79 AEAlkpakvdRIH-----TFIATSDIHLKYKLKKTRE---EVLERAVEAVEyAKSHGLDVEFsaEDATRTDLDFLIEVVE 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 152 MISKFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNI--TFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAG 229
Cdd:cd07940  151 AAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIkvPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAG 230
                        250       260       270
                 ....*....|....*....|....*....|...
gi 446542007 230 NASIEEIIAILTKKQIVM---TSLNLPDIYKTS 259
Cdd:cd07940  231 NAALEEVVMALKTRYDYYgveTGIDTEELYETS 263
nifV_homocitr TIGR02660
homocitrate synthase NifV; This family consists of the NifV clade of homocitrate synthases, ...
1-344 4.33e-50

homocitrate synthase NifV; This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]


Pssm-ID: 274248 [Multi-domain]  Cd Length: 365  Bit Score: 172.08  E-value: 4.33e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007    1 MIRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEynIHQYREILNNDK--EIVVLTRLDENEI 78
Cdd:TIGR02660   1 PVIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGEEE--RAVIRAIVALGLpaRLMAWCRARDADI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   79 NKILNLKIHnlAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRCSLEKLCEYMEMISKFPI 158
Cdd:TIGR02660  79 EAAARCGVD--AVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  159 RTVTFADTVGCSTPFEYGNIFKEFVKKYPnITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIA 238
Cdd:TIGR02660 157 DRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAM 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  239 ILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKNskavQF 318
Cdd:TIGR02660 236 ALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYEPFDPELVGRSR----RI 311
                         330       340
                  ....*....|....*....|....*.
gi 446542007  319 PISNISSKKILKNKFKSIVHPKDIEE 344
Cdd:TIGR02660 312 VIGKHSGRAALINALAQLGIPLSEEE 337
HMGL-like pfam00682
HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and ...
2-259 4.65e-48

HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.


Pssm-ID: 459902 [Multi-domain]  Cd Length: 264  Bit Score: 163.67  E-value: 4.65e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007    2 IRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREILNNDK--EIVVLTRLDENEIN 79
Cdd:pfam00682   2 VAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEV--VRAIAKVIPhaRILVLCRAREHDIK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   80 KILNLKIHNLA--VKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKvnQVAIDICF--EDATRCSLEKLCEYMEMISK 155
Cdd:pfam00682  80 AAVEALKGAGAvrVHVFIATSDLHRKYKLGKDREEVAKRAVAAVKAAR--SRGIDVEFspEDASRTDPEFLAEVVEAAIE 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  156 FPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPN-ITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIE 234
Cdd:pfam00682 158 AGATRINIPDTVGVLTPNEAAELISALKARVPNkAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAALE 237
                         250       260
                  ....*....|....*....|....*
gi 446542007  235 EIIAILtKKQIVMTSLNLPDIYKTS 259
Cdd:pfam00682 238 EVAAAL-EGLGVDTGLDLQRLRSIA 261
 
Name Accession Description Interval E-value
LeuA COG0119
Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; ...
2-312 6.10e-83

Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Isopropylmalate/homocitrate/citramalate synthases is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis


Pssm-ID: 439889 [Multi-domain]  Cd Length: 452  Bit Score: 260.10  E-value: 6.10e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   2 IRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREILNNDK--EIVVLTRLDENEIN 79
Cdd:COG0119    4 IIIFDTTLRDGEQAPGVSFSVEEKLRIARLLDELGVDEIEAGFPAASPGDFEA--VRRIAELGLdaTICALARARRKDID 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  80 KILN-LKIHNLA-VKILLPISDLHIKEKLNFTSEyynERINKCLNMIK-VNQVAIDICF--EDATRCSLEKLCEYMEMIS 154
Cdd:COG0119   82 AALEaLKGAGVDrVHLFIKTSDLHVEYKLRKTRE---EVLEMAVEAVKyAKEHGLEVEFsaEDATRTDPDFLLEVLEAAI 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 155 KFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIE 234
Cdd:COG0119  159 EAGADRINLPDTVGGATPNEVADLIEELRERVPDVILSVHCHNDLGLAVANSLAAVEAGADQVEGTINGIGERAGNAALE 238
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446542007 235 EIIAILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKN 312
Cdd:COG0119  239 EVVMNLKLKYGVDTGIDLSKLTELSRLVSEITGLPVPPNKPIVGENAFAHESGIHQDGILKNPETYEPIDPEDVGRER 316
PRK00915 PRK00915
2-isopropylmalate synthase; Validated
86-316 1.40e-62

2-isopropylmalate synthase; Validated


Pssm-ID: 234864 [Multi-domain]  Cd Length: 513  Bit Score: 208.81  E-value: 1.40e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  86 IHnlavkILLPISDLHIKEKLNFTSEYYNERINKCLNMIKvnQVAIDICF--EDATRCSLEKLCEYMEMISKFPIRTVTF 163
Cdd:PRK00915  96 IH-----TFIATSPIHMEYKLKMSREEVLEMAVEAVKYAR--SYTDDVEFsaEDATRTDLDFLCRVVEAAIDAGATTINI 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 164 ADTVGCSTPFEYGNIFKEFVKKYPNI---TFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIAIL 240
Cdd:PRK00915 169 PDTVGYTTPEEFGELIKTLRERVPNIdkaIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMAL 248
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446542007 241 -TKKQI--VMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKNSKAV 316
Cdd:PRK00915 249 kTRKDIygVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGIHQDGVLKNRETYEIMTPESVGLKANRLV 327
PRK09389 PRK09389
(R)-citramalate synthase; Provisional
1-309 2.86e-62

(R)-citramalate synthase; Provisional


Pssm-ID: 236493 [Multi-domain]  Cd Length: 488  Bit Score: 207.48  E-value: 2.86e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   1 MIRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEynihqyREI------LNNDKEIVVLTRLD 74
Cdd:PRK09389   2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSEGE------REAikavtdEGLNAEICSFARAV 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  75 ENEINKILNLKIHnlAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRCSLEKLCEYMEMIS 154
Cdd:PRK09389  76 KVDIDAALECDVD--SVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGI 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 155 KFPIRTVTFADTVGCSTPFEYGNIFKEfVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIE 234
Cdd:PRK09389 154 EAGADRICFCDTVGILTPEKTYELFKR-LSELVKGPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGERAGNASLE 232
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446542007 235 EIIAILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLG 309
Cdd:PRK09389 233 EVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGIHVDGLLKDTETYEPITPETVG 307
aksA PRK11858
trans-homoaconitate synthase; Reviewed
1-336 7.73e-61

trans-homoaconitate synthase; Reviewed


Pssm-ID: 183341 [Multi-domain]  Cd Length: 378  Bit Score: 200.40  E-value: 7.73e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   1 MIRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREI--LNNDKEIVVLTRLDENEI 78
Cdd:PRK11858   4 DIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEA--IKAIakLGLNASILALNRAVKSDI 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  79 NKILNLKIHnlAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRCSLEKLCEYMEMISKFPI 158
Cdd:PRK11858  82 DASIDCGVD--AVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 159 RTVTFADTVGCSTPFEYGNIFKEFVKKYpNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIA 238
Cdd:PRK11858 160 DRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVM 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 239 ILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKNskavQF 318
Cdd:PRK11858 239 ALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPLTYEPFLPEEVGLER----RI 314
                        330
                 ....*....|....*...
gi 446542007 319 PISNISSKKILKNKFKSI 336
Cdd:PRK11858 315 VLGKHSGRHALKNKLKEY 332
PLN03228 PLN03228
methylthioalkylmalate synthase; Provisional
2-343 1.64e-55

methylthioalkylmalate synthase; Provisional


Pssm-ID: 178767 [Multi-domain]  Cd Length: 503  Bit Score: 189.75  E-value: 1.64e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   2 IRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYN-IHQYREILNN--DKE------IVVLTR 72
Cdd:PLN03228  85 VRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEaVKTIAKTVGNevDEEtgyvpvICGIAR 164
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  73 LDENEINKILN-LK-IHNLAVKILLPISDLHIKEKLNFTSEyynERINKCLNMIKVNQVA--IDICF--EDATRCSLEKL 146
Cdd:PLN03228 165 CKKRDIEAAWEaLKyAKRPRILAFTSTSDIHMKYKLKKTKE---EVIEMAVSSIRYAKSLgfHDIQFgcEDGGRSDKEFL 241
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 147 CEYMEMISKFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYP---NITFSAHCHNDLGLATANTFAAILNGAQQIETTFLG 223
Cdd:PLN03228 242 CKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPgidDIVFSVHCHNDLGLATANTIAGICAGARQVEVTING 321
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 224 IGERAGNASIEEIIAILTKK-----QIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNIS 298
Cdd:PLN03228 322 IGERSGNASLEEVVMALKCRgaylmNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANCFVHESGIHQDGILKNRS 401
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 446542007 299 MYQYILPSDLGLKNSKAVQFPISNISSKKILKNKFKSIVHPKDIE 343
Cdd:PLN03228 402 TYEILSPEDIGIVKSQNSGIVLGKLSGRHAVKDRLKELGYELDDE 446
DRE_TIM_IPMS cd07940
2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate ...
4-259 7.07e-54

2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163678  Cd Length: 268  Bit Score: 179.18  E-value: 7.07e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   4 IQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREILNNDK--EIVVLTRLDENEINKI 81
Cdd:cd07940    1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEA--VKRIAREVLnaEICGLARAVKKDIDAA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  82 LNL-------KIHnlavkILLPISDLHIKEKLNFTSEyynERINKCLNMIK-VNQVAIDICF--EDATRCSLEKLCEYME 151
Cdd:cd07940   79 AEAlkpakvdRIH-----TFIATSDIHLKYKLKKTRE---EVLERAVEAVEyAKSHGLDVEFsaEDATRTDLDFLIEVVE 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 152 MISKFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNI--TFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAG 229
Cdd:cd07940  151 AAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIkvPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAG 230
                        250       260       270
                 ....*....|....*....|....*....|...
gi 446542007 230 NASIEEIIAILTKKQIVM---TSLNLPDIYKTS 259
Cdd:cd07940  231 NAALEEVVMALKTRYDYYgveTGIDTEELYETS 263
nifV_homocitr TIGR02660
homocitrate synthase NifV; This family consists of the NifV clade of homocitrate synthases, ...
1-344 4.33e-50

homocitrate synthase NifV; This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]


Pssm-ID: 274248 [Multi-domain]  Cd Length: 365  Bit Score: 172.08  E-value: 4.33e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007    1 MIRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEynIHQYREILNNDK--EIVVLTRLDENEI 78
Cdd:TIGR02660   1 PVIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGEEE--RAVIRAIVALGLpaRLMAWCRARDADI 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   79 NKILNLKIHnlAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRCSLEKLCEYMEMISKFPI 158
Cdd:TIGR02660  79 EAAARCGVD--AVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  159 RTVTFADTVGCSTPFEYGNIFKEFVKKYPnITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIA 238
Cdd:TIGR02660 157 DRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAM 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  239 ILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLKNskavQF 318
Cdd:TIGR02660 236 ALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYEPFDPELVGRSR----RI 311
                         330       340
                  ....*....|....*....|....*.
gi 446542007  319 PISNISSKKILKNKFKSIVHPKDIEE 344
Cdd:TIGR02660 312 VIGKHSGRAALINALAQLGIPLSEEE 337
PLN02321 PLN02321
2-isopropylmalate synthase
2-350 6.97e-49

2-isopropylmalate synthase


Pssm-ID: 215182 [Multi-domain]  Cd Length: 632  Bit Score: 174.39  E-value: 6.97e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   2 IRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYN-IHQYREILNNDKE-------IVVLTRL 73
Cdd:PLN02321  87 VRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEaVKTIAKEVGNEVDedgyvpvICGLSRC 166
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  74 DENEINKILNLKIHNLAVKI--LLPISDLHIKEKLNFTSEYYNErinkclnmIKVNQVAI-------DICF--EDATRCS 142
Cdd:PLN02321 167 NKKDIDAAWEAVKHAKRPRIhtFIATSEIHMEHKLRKTPDEVVE--------IARDMVKYarslgceDVEFspEDAGRSD 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 143 LEKLCEYMEMISKFPIRTVTFADTVGCSTPFEYGNI---FKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIET 219
Cdd:PLN02321 239 PEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLiadIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEV 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 220 TFLGIGERAGNASIEEII-AILTKKQIVM----TSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTN 294
Cdd:PLN02321 319 TINGIGERAGNASLEEVVmAIKCRGDEQLgglyTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANAFAHESGIHQDGML 398
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446542007 295 KNISMYQYILPSDLGLKNSKAVQFPISNISSKKILKNKFKSIVHPKDIEENISFYK 350
Cdd:PLN02321 399 KHKGTYEIISPEDIGLFRGNDAGIVLGKLSGRHALKSRLKELGYELDDDELDDVFK 454
HMGL-like pfam00682
HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and ...
2-259 4.65e-48

HMGL-like; This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.


Pssm-ID: 459902 [Multi-domain]  Cd Length: 264  Bit Score: 163.67  E-value: 4.65e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007    2 IRIQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIhqYREILNNDK--EIVVLTRLDENEIN 79
Cdd:pfam00682   2 VAICDTTLRDGEQALGVAFSIDEKLAIARALDAAGVDEIEVGFPAASEDDFEV--VRAIAKVIPhaRILVLCRAREHDIK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   80 KILNLKIHNLA--VKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKvnQVAIDICF--EDATRCSLEKLCEYMEMISK 155
Cdd:pfam00682  80 AAVEALKGAGAvrVHVFIATSDLHRKYKLGKDREEVAKRAVAAVKAAR--SRGIDVEFspEDASRTDPEFLAEVVEAAIE 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  156 FPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPN-ITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIE 234
Cdd:pfam00682 158 AGATRINIPDTVGVLTPNEAAELISALKARVPNkAIISVHCHNDLGMAVANSLAAVEAGADRVDGTVNGIGERAGNAALE 237
                         250       260
                  ....*....|....*....|....*
gi 446542007  235 EIIAILtKKQIVMTSLNLPDIYKTS 259
Cdd:pfam00682 238 EVAAAL-EGLGVDTGLDLQRLRSIA 261
DRE_TIM_metallolyase cd03174
DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes ...
6-259 2.69e-47

DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163674 [Multi-domain]  Cd Length: 265  Bit Score: 161.85  E-value: 2.69e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   6 DNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNIHQ----YREILNNDK--EIVVLTRLDENEIN 79
Cdd:cd03174    2 DTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDdwevLRAIRKLVPnvKLQALVRNREKGIE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  80 KILNLKIHnlAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRC--SLEKLCEYMEMISKFP 157
Cdd:cd03174   82 RALEAGVD--EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCktDPEYVLEVAKALEEAG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 158 IRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEII 237
Cdd:cd03174  160 ADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLV 239
                        250       260
                 ....*....|....*....|..
gi 446542007 238 AILTKKQIVmTSLNLPDIYKTS 259
Cdd:cd03174  240 AALEGLGID-TGIDLEKLLEIS 260
DRE_TIM_NifV cd07939
Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain; FrbC (NifV) ...
4-240 4.50e-43

Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain; FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163677 [Multi-domain]  Cd Length: 259  Bit Score: 150.73  E-value: 4.50e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   4 IQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVG---MCttfEDEynIHQYREI--LNNDKEIVVLTRLDENEI 78
Cdd:cd07939    1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGipaMG---EEE--REAIRAIvaLGLPARLIVWCRAVKEDI 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  79 NKILNLKIHnlAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRCSLEKLCEYMEMISKFPI 158
Cdd:cd07939   76 EAALRCGVT--AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGA 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 159 RTVTFADTVGCSTPFEYGNIFKEFVKKYP-NITFsaHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEII 237
Cdd:cd07939  154 DRLRFADTVGILDPFTTYELIRRLRAATDlPLEF--HAHNDLGLATANTLAAVRAGATHVSVTVNGLGERAGNAALEEVV 231

                 ...
gi 446542007 238 AIL 240
Cdd:cd07939  232 MAL 234
DRE_TIM_CMS cd07945
Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic ...
6-277 2.12e-37

Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain; Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163683 [Multi-domain]  Cd Length: 280  Bit Score: 136.35  E-value: 2.12e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   6 DNTIRDGMQQSNVRKS----IIVKKEVLQEINkisINSVEVGMCTTFEDEYN----IHQYREILNNDKEIVVLTRLDENE 77
Cdd:cd07945    2 DTTLRDGEQTSGVSFSpsekLNIAKILLQELK---VDRIEVASARVSEGEFEavqkIIDWAAEEGLLDRIEVLGFVDGDK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  78 -INKILN--LKIHNLAVKIllpiSDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFED---ATRCSLEKLCEYME 151
Cdd:cd07945   79 sVDWIKSagAKVLNLLTKG----SLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDwsnGMRDSPDYVFQLVD 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 152 MISKFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNA 231
Cdd:cd07945  155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNA 234
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 446542007 232 SIEEIIAILTKKQIVMTSLNLPDIYKTSMNISKILDIRLAENKPVI 277
Cdd:cd07945  235 PLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280
LysS_fung_arch TIGR02146
homocitrate synthase; This model includes the yeast LYS21 gene which carries out the first ...
4-311 8.15e-29

homocitrate synthase; This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.


Pssm-ID: 162728 [Multi-domain]  Cd Length: 344  Bit Score: 114.50  E-value: 8.15e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007    4 IQDNTIRDGMQQSNVRKSIIVKKEVLQEINKISINSVEVGMCTTFEDEYNihqyreilnnDKEIVVLTRLDENEINKILN 83
Cdd:TIGR02146   1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAASKQSRI----------DIEIIASLGLKANIVTHIRC 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   84 LK--------IHNLAVKILLPISDLHIKEKLNFTSEYYNERINKCLNMIKVNQVAIDICFEDATRCSLEKLCEYMEMISK 155
Cdd:TIGR02146  71 RLddakvaveLGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGV 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  156 FPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEE 235
Cdd:TIGR02146 151 FGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGERNGITPLGG 230
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446542007  236 IIAILTKKQ-IVMTSLN-LPDIykTSMnISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPSDLGLK 311
Cdd:TIGR02146 231 ILARLYYHTpMYVYKLGkLIEL--TRM-VAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRTYEFLPPEVFGRK 305
PRK12344 PRK12344
putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
159-306 1.94e-24

putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional


Pssm-ID: 237068 [Multi-domain]  Cd Length: 524  Bit Score: 104.40  E-value: 1.94e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 159 RTVTFADTVGCSTPFEYGNIFKEfVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIA 238
Cdd:PRK12344 173 DWVVLCDTNGGTLPHEVAEIVAE-VRAAPGVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGERCGNANLCSIIP 251
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 239 IL-TKKQI-VMTSLNLPDIYKTSMNISKILDIRLAENKPVIGKNIFKHESGIHQDGTNKNISMYQYILPS 306
Cdd:PRK12344 252 NLqLKMGYeCLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGGIHVSAVLKDPRTYEHIDPE 321
DRE_TIM_LeuA3 cd07941
Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel ...
159-243 1.37e-18

Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163679  Cd Length: 273  Bit Score: 84.81  E-value: 1.37e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 159 RTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIA 238
Cdd:cd07941  166 DWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGNANLCSIIP 245

                 ....*
gi 446542007 239 ILTKK 243
Cdd:cd07941  246 NLQLK 250
DRE_TIM_HCS cd07948
Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel ...
130-253 4.88e-18

Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain; Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163685  Cd Length: 262  Bit Score: 82.76  E-value: 4.88e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 130 AIDICF--EDATRCSLEKLCEYMEMISKFPIRTVTFADTVGCSTPFEYGNIFKEfVKKYPNITFSAHCHNDLGLATANTF 207
Cdd:cd07948  125 GIEVRFssEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRT-LRGVVSCDIEFHGHNDTGCAIANAY 203
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 446542007 208 AAILNGAQQIETTFLGIGERAGNASIEEIIA--ILTKKQIVMTSLNLP 253
Cdd:cd07948  204 AALEAGATHIDTTVLGIGERNGITPLGGLIArmYTADPEYVVSKYKLE 251
DRE_TIM_Re_CS cd07947
Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain; ...
2-237 5.54e-17

Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain; Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163684  Cd Length: 279  Bit Score: 80.06  E-value: 5.54e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007   2 IRIQDNTIRDGmQQSnvrKSIIVKKEVLQ---EINKISINSVEVGMCTTFEdeYNihqyreilNNDKEIVVL-------- 70
Cdd:cd07947    1 IWITDTTFRDG-QQA---RPPYTVEQIVKiydYLHELGGGSGVIRQTEFFL--YT--------EKDREAVEAcldrgykf 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007  71 ------TRLDENEINKILNLKIHNlaVKILLPISDLHIKEKLNFT----SEYYNERINKCLNMIKVNQVAidicFEDATR 140
Cdd:cd07947   67 pevtgwIRANKEDLKLVKEMGLKE--TGILMSVSDYHIFKKLKMTreeaMEKYLEIVEEALDHGIKPRCH----LEDITR 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 141 CSLEKLC-----EYMEMISKFPIRTVTFA-DTVGCSTPFEYGN-------IFKEFVK--KYPNITFSAHCHNDLGLATAN 205
Cdd:cd07947  141 ADIYGFVlpfvnKLMKLSKESGIPVKIRLcDTLGYGVPYPGASlprsvpkIIYGLRKdcGVPSENLEWHGHNDFYKAVAN 220
                        250       260       270
                 ....*....|....*....|....*....|..
gi 446542007 206 TFAAILNGAQQIETTFLGIGERAGNASIEEII 237
Cdd:cd07947  221 AVAAWLYGASWVNCTLLGIGERTGNCPLEAMV 252
DRE_TIM_HOA_like cd07944
4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain; This family of ...
139-244 1.32e-11

4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain; This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163682  Cd Length: 266  Bit Score: 64.12  E-value: 1.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 139 TRCSLEKLCEYMEMISKFPIRTVTFADTVGCSTPFEYGNIFKEFVKKY-PNITFSAHCHNDLGLATANTFAAILNGAQQI 217
Cdd:cd07944  133 SGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLdKDIKLGFHAHNNLQLALANTLEAIELGVEII 212
                         90       100
                 ....*....|....*....|....*..
gi 446542007 218 ETTFLGIGERAGNASIEEIIAILTKKQ 244
Cdd:cd07944  213 DATVYGMGRGAGNLPTELLLDYLNNKF 239
DRE_TIM_HOA cd07943
4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; 4-hydroxy ...
194-252 3.70e-10

4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain; 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163681  Cd Length: 263  Bit Score: 59.82  E-value: 3.70e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446542007 194 HCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIAILTKKQIvMTSLNL 252
Cdd:cd07943  191 HGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLERMGI-ETGIDL 248
DRE_TIM_LeuA cd07942
Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; ...
166-233 4.24e-10

Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain; Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163680  Cd Length: 284  Bit Score: 59.89  E-value: 4.24e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446542007 166 TVGCSTPFEYGNIFKEFVKKYPN---ITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASI 233
Cdd:cd07942  184 TVEVATPNVYADQIEWFCRNLSRresVIISLHPHNDRGTGVAAAELALLAGADRVEGTLFGNGERTGNVDL 254
DRE_TIM_HMGL cd07938
3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; ...
135-240 7.41e-09

3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".


Pssm-ID: 163676  Cd Length: 274  Bit Score: 56.25  E-value: 7.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 135 FEDATrcSLEKLCEYMEMISKFPIRTVTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGA 214
Cdd:cd07938  142 YEGEV--PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGV 219
                         90       100       110
                 ....*....|....*....|....*....|..
gi 446542007 215 QQIETTFLGIG------ERAGNASIEEIIAIL 240
Cdd:cd07938  220 RRFDSSVGGLGgcpfapGATGNVATEDLVYML 251
PRK08195 PRK08195
4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
194-242 1.63e-08

4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated


Pssm-ID: 181282 [Multi-domain]  Cd Length: 337  Bit Score: 55.61  E-value: 1.63e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446542007 194 HCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEIIAILTK 242
Cdd:PRK08195 195 HGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDR 243
PRK03739 PRK03739
2-isopropylmalate synthase; Validated
166-230 4.10e-07

2-isopropylmalate synthase; Validated


Pssm-ID: 235154 [Multi-domain]  Cd Length: 552  Bit Score: 51.70  E-value: 4.10e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446542007 166 TVGCSTPfeygNIFK---EF----VKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGN 230
Cdd:PRK03739 213 TVEMSTP----NVYAdqiEWmcrnLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGERTGN 280
PRK14847 PRK14847
2-isopropylmalate synthase;
189-255 1.90e-06

2-isopropylmalate synthase;


Pssm-ID: 184849  Cd Length: 333  Bit Score: 49.24  E-value: 1.90e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446542007 189 ITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIGERAGNASIEEiIAILTKKQIVMTSLNLPDI 255
Cdd:PRK14847 241 IVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVA-LALNLERQGIASGLDFRDM 306
PRK05692 PRK05692
hydroxymethylglutaryl-CoA lyase; Provisional
161-271 6.42e-03

hydroxymethylglutaryl-CoA lyase; Provisional


Pssm-ID: 180206  Cd Length: 287  Bit Score: 37.94  E-value: 6.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446542007 161 VTFADTVGCSTPFEYGNIFKEFVKKYPNITFSAHCHNDLGLATANTFAAILNGAQQIETTFLGIG------ERAGNASIE 234
Cdd:PRK05692 172 ISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGgcpyapGASGNVATE 251
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446542007 235 EIIAILTKKQIvMTSLNLPDIYKTSMNISKILDIRLA 271
Cdd:PRK05692 252 DVLYMLHGLGI-ETGIDLDKLVRAGQFIQSKLGRPLP 287
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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