|
Name |
Accession |
Description |
Interval |
E-value |
| VI_ClpV1 |
TIGR03345 |
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, ... |
13-896 |
0e+00 |
|
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274528 [Multi-domain] Cd Length: 852 Bit Score: 1077.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 13 LNLFSRQALEMAASECMSQQAAEITVSHVLIQMLAMPRSDLRVITRQGDIGMEELRQALTVENYTTARSADSYPAFSPML 92
Cdd:TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNTRTPVFSPHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 93 VEWLKEGWLLASAEMQHSELRGGVLLLALLHSP-LRYIPPAAARLLTGINRDRLQQDFVQWTQESAESVVPDADGKGAGT 171
Cdd:TIGR03345 81 VELLQEAWLLASLELGDGRIRSGHLLLALLTDPeLRRLLGSISPELAKIDREALREALPALVEGSAEASAAAADAAPAGA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 172 LTDAADT-LLARYAKNMTADARNGRLDPVLCRDHEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDK 250
Cdd:TIGR03345 161 AAGAAGTsALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 251 LKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTI 330
Cdd:TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 331 AATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAI 410
Cdd:TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 411 DVLDTACARVAINLSSPPKQISALTTLSHQQEAEIRQLERELRIGLrTDTSRMTEVLVQYDETLTALDELEAAWHQQQTL 490
Cdd:TIGR03345 401 SLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGA-DHDERLAELRAELAALEAELAALEARWQQEKEL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 491 VREIIALRQQLlgvaeddaaplpdadtvedtqpeseseqdntgavpadEADREQPEETAETVSpvQRLAHLTAELDALHN 570
Cdd:TIGR03345 480 VEAILALRAEL-------------------------------------EADADAPADDDDALR--AQLAELEAALASAQG 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 571 DRLLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFL 650
Cdd:TIGR03345 521 EEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFL 600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 651 LAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKA 730
Cdd:TIGR03345 601 LVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 731 HPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHADDPETM------QEVLYPVLADFFKPALLARME 804
Cdd:TIGR03345 681 HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETApdpealLEALRPELLKVFKPAFLGRMT 760
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 805 VVPYLPLSKETLATIIAGKLARLDNVLRSRFGAEVVIEPEVTDEIMSRVTRAENGARMLESVIDGDMLPPLSLLLLQKMA 884
Cdd:TIGR03345 761 VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLA 840
|
890
....*....|..
gi 446537020 885 ANTAIARIRLSA 896
Cdd:TIGR03345 841 AGEPIERIHLDV 852
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
12-867 |
0e+00 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 877.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 12 RLNLFSRQALEMAASECMSQQAAEITVSHVLIQMLAMPRSDLRVITRQGDIGMEELRQALT--VENYTTARSADSYPAFS 89
Cdd:COG0542 5 KFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEeaLGRLPKVSGSSGQPYLS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 90 PMLVEWLKEGWLLASaEMQHSELRGGvlllallH---SPLRYIPPAAARLLT--GINRDRLQQDFVQWTQESAesvvpdA 164
Cdd:COG0542 85 PRLKRVLELAELEAR-KLGDEYISTE-------HlllALLREGEGVAARILKklGITLEALREALEELRGGSR------V 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 165 DGKGAGTLTDAadtlLARYAKNMTADARNGRLDPVLCRDHEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVA 244
Cdd:COG0542 151 TSQNPESKTPA----LDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 245 GQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKPALAR 324
Cdd:COG0542 227 GDVPESLKDKRVLSLDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAANLLKPALAR 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 325 GELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQ 404
Cdd:COG0542 307 GELRCIGATTLDEYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRF 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 405 LPDKAIDVLDTACARVAINLSSPPKQISALttlshqqEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLTAL----DEL 480
Cdd:COG0542 387 LPDKAIDLIDEAAARVRMEIDSKPEELDEL-------ERRLEQLEIEKEALKKEQDEASFERLAELRDELAELeeelEAL 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 481 EAAWHQQQTLVREIIALRQQLLgvaeddaaplpdadtvedtqpeseseqDNTGAVPADEADREQPEETAETVSPvqrlah 560
Cdd:COG0542 460 KARWEAEKELIEEIQELKEELE---------------------------QRYGKIPELEKELAELEEELAELAP------ 506
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 561 ltaeldalhndrlLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLR 640
Cdd:COG0542 507 -------------LLREEVTEEDIAEVVSRWTGIPVGKLLEGEREKLLNLEEELHERVIGQDEAVEAVADAIRRSRAGLK 573
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 641 RPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYS 720
Cdd:COG0542 574 DPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYS 653
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 721 VVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHAD---DPETMQEVLYPVLADFFKP 797
Cdd:COG0542 654 VVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTIIIMTSNIGSELILDLAEdepDYEEMKEAVMEELKKHFRP 733
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446537020 798 ALLARM-EVVPYLPLSKETLATIIAGKLARLDNVLRSRfGAEVVIEPEVTDEIMSRVTRAENGARMLESVI 867
Cdd:COG0542 734 EFLNRIdEIIVFHPLSKEELRKIVDLQLKRLRKRLAER-GITLELTDAAKDFLAEKGYDPEYGARPLKRAI 803
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
126-867 |
2.09e-168 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 511.14 E-value: 2.09e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 126 LRYIPPAAARLLT--GINRDRLQQDFVQWTQESAEsVVPDADGKGAGTLTdaadtlLARYAKNMTADARNGRLDPVLCRD 203
Cdd:CHL00095 113 LEEGEGVAARVLEnlGVDLSKIRSLILNLIGEIIE-AILGAEQSRSKTPT------LEEFGTNLTKEAIDGNLDPVIGRE 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 204 HEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMA 283
Cdd:CHL00095 186 KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFD 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 284 EVISSPvPVILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAA 363
Cdd:CHL00095 266 EIQENN-NIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVE 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 364 EATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARVAINLSSPPKqisalttlshqqea 443
Cdd:CHL00095 345 ETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPP-------------- 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 444 EIRQLERELRiglrtdtsrmtEVLVQYDETLTALDELEAAwhqqQTLVREiIALRQQLlgvaeddAAPLPDADTVEDTQP 523
Cdd:CHL00095 411 AARELDKELR-----------EILKDKDEAIREQDFETAK----QLRDRE-MEVRAQI-------AAIIQSKKTEEEKRL 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 524 EseseqdntgavpadeadreqpeetaetvspvqrlahltaeldalhndrllvSPHVDKKQIAAVIAEWTGVPLNRLSQNE 603
Cdd:CHL00095 468 E---------------------------------------------------VPVVTEEDIAEIVSAWTGIPVNKLTKSE 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 604 MSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMS 683
Cdd:CHL00095 497 SEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMS 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 684 EFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFF 763
Cdd:CHL00095 577 EYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 764 LTSNLGYQVIV--------EHADDPETmqEVLYPVLAD--------FFKPALLARM-EVVPYLPLSKETLATIIAGKLAR 826
Cdd:CHL00095 657 MTSNLGSKVIEtnsgglgfELSENQLS--EKQYKRLSNlvneelkqFFRPEFLNRLdEIIVFRQLTKNDVWEIAEIMLKN 734
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 446537020 827 LDNVLRsrfgaEVVIEPEVTDEIMSRVTR-AEN---GARMLESVI 867
Cdd:CHL00095 735 LFKRLN-----EQGIQLEVTERIKTLLIEeGYNplyGARPLRRAI 774
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
607-808 |
3.48e-74 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 240.93 E-value: 3.48e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 607 ITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQ 686
Cdd:cd19499 2 LLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEYM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 687 EKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTS 766
Cdd:cd19499 82 EKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMTS 161
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446537020 767 NlgyqvivehaddpetmqevlypvladFFKPALLARMEVVPY 808
Cdd:cd19499 162 N--------------------------HFRPEFLNRIDEIVV 177
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
644-806 |
7.61e-57 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 192.80 E-value: 7.61e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 644 RPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVL 723
Cdd:pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 724 LDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHA-----DDPETMQEVLYPVLADFFKPA 798
Cdd:pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASrlgdsPDYELLKEEVMDLLKKGFIPE 160
|
....*...
gi 446537020 799 LLARMEVV 806
Cdd:pfam07724 161 FLGRLPII 168
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
217-355 |
2.23e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 217 RKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDKLKNTDIMTLDLGALQAGASVK-----GEFEKRFKGLMAEvISSPVP 291
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGgkkasGSGELRLRLALAL-ARKLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446537020 292 VILFIDEAHTLIGAGNQQGGLDI--SNLLKPALARGELKTIAATTWSEykkyFEKDAALSRRFQLV 355
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLeeLRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRR 141
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| VI_ClpV1 |
TIGR03345 |
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, ... |
13-896 |
0e+00 |
|
type VI secretion ATPase, ClpV1 family; Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274528 [Multi-domain] Cd Length: 852 Bit Score: 1077.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 13 LNLFSRQALEMAASECMSQQAAEITVSHVLIQMLAMPRSDLRVITRQGDIGMEELRQALTVENYTTARSADSYPAFSPML 92
Cdd:TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVDLGRLKADLARALDKLPRGNTRTPVFSPHL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 93 VEWLKEGWLLASAEMQHSELRGGVLLLALLHSP-LRYIPPAAARLLTGINRDRLQQDFVQWTQESAESVVPDADGKGAGT 171
Cdd:TIGR03345 81 VELLQEAWLLASLELGDGRIRSGHLLLALLTDPeLRRLLGSISPELAKIDREALREALPALVEGSAEASAAAADAAPAGA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 172 LTDAADT-LLARYAKNMTADARNGRLDPVLCRDHEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDK 250
Cdd:TIGR03345 161 AAGAAGTsALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 251 LKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTI 330
Cdd:TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 331 AATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAI 410
Cdd:TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 411 DVLDTACARVAINLSSPPKQISALTTLSHQQEAEIRQLERELRIGLrTDTSRMTEVLVQYDETLTALDELEAAWHQQQTL 490
Cdd:TIGR03345 401 SLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGA-DHDERLAELRAELAALEAELAALEARWQQEKEL 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 491 VREIIALRQQLlgvaeddaaplpdadtvedtqpeseseqdntgavpadEADREQPEETAETVSpvQRLAHLTAELDALHN 570
Cdd:TIGR03345 480 VEAILALRAEL-------------------------------------EADADAPADDDDALR--AQLAELEAALASAQG 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 571 DRLLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFL 650
Cdd:TIGR03345 521 EEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFL 600
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 651 LAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKA 730
Cdd:TIGR03345 601 LVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 731 HPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHADDPETM------QEVLYPVLADFFKPALLARME 804
Cdd:TIGR03345 681 HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETApdpealLEALRPELLKVFKPAFLGRMT 760
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 805 VVPYLPLSKETLATIIAGKLARLDNVLRSRFGAEVVIEPEVTDEIMSRVTRAENGARMLESVIDGDMLPPLSLLLLQKMA 884
Cdd:TIGR03345 761 VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLA 840
|
890
....*....|..
gi 446537020 885 ANTAIARIRLSA 896
Cdd:TIGR03345 841 AGEPIERIHLDV 852
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
12-867 |
0e+00 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 877.10 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 12 RLNLFSRQALEMAASECMSQQAAEITVSHVLIQMLAMPRSDLRVITRQGDIGMEELRQALT--VENYTTARSADSYPAFS 89
Cdd:COG0542 5 KFTEKAQEALEAAQELARRLGHQEVEPEHLLLALLEQGEGLAAKLLRKLGVDLDALREELEeaLGRLPKVSGSSGQPYLS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 90 PMLVEWLKEGWLLASaEMQHSELRGGvlllallH---SPLRYIPPAAARLLT--GINRDRLQQDFVQWTQESAesvvpdA 164
Cdd:COG0542 85 PRLKRVLELAELEAR-KLGDEYISTE-------HlllALLREGEGVAARILKklGITLEALREALEELRGGSR------V 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 165 DGKGAGTLTDAadtlLARYAKNMTADARNGRLDPVLCRDHEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVA 244
Cdd:COG0542 151 TSQNPESKTPA----LDKYGRDLTELAREGKLDPVIGRDEEIRRVIQILSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 245 GQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKPALAR 324
Cdd:COG0542 227 GDVPESLKDKRVLSLDLGALVAGAKYRGEFEERLKAVLDEVKKSEGNIILFIDELHTLVGAGGAEGAMDAANLLKPALAR 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 325 GELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQ 404
Cdd:COG0542 307 GELRCIGATTLDEYRKYIEKDAALERRFQPVLVEEPSVEDTISILRGLKERYEAHHGVRITDEALVAAVRLSDRYITDRF 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 405 LPDKAIDVLDTACARVAINLSSPPKQISALttlshqqEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLTAL----DEL 480
Cdd:COG0542 387 LPDKAIDLIDEAAARVRMEIDSKPEELDEL-------ERRLEQLEIEKEALKKEQDEASFERLAELRDELAELeeelEAL 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 481 EAAWHQQQTLVREIIALRQQLLgvaeddaaplpdadtvedtqpeseseqDNTGAVPADEADREQPEETAETVSPvqrlah 560
Cdd:COG0542 460 KARWEAEKELIEEIQELKEELE---------------------------QRYGKIPELEKELAELEEELAELAP------ 506
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 561 ltaeldalhndrlLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLR 640
Cdd:COG0542 507 -------------LLREEVTEEDIAEVVSRWTGIPVGKLLEGEREKLLNLEEELHERVIGQDEAVEAVADAIRRSRAGLK 573
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 641 RPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYS 720
Cdd:COG0542 574 DPNRPIGSFLFLGPTGVGKTELAKALAEFLFGDEDALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYS 653
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 721 VVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHAD---DPETMQEVLYPVLADFFKP 797
Cdd:COG0542 654 VVLLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTIIIMTSNIGSELILDLAEdepDYEEMKEAVMEELKKHFRP 733
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446537020 798 ALLARM-EVVPYLPLSKETLATIIAGKLARLDNVLRSRfGAEVVIEPEVTDEIMSRVTRAENGARMLESVI 867
Cdd:COG0542 734 EFLNRIdEIIVFHPLSKEELRKIVDLQLKRLRKRLAER-GITLELTDAAKDFLAEKGYDPEYGARPLKRAI 803
|
|
| chaperone_ClpB |
TIGR03346 |
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent ... |
153-867 |
0e+00 |
|
ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization]
Pssm-ID: 274529 [Multi-domain] Cd Length: 850 Bit Score: 578.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 153 TQESAESVVPDADGKGAGTLTDAADT--LLARYAKNMTADARNGRLDPVLCRDHEIDLMIDILCRRRKNNPVVVGEAGVG 230
Cdd:TIGR03346 127 TADALEAAINAVRGGQKVTDANAEDQyeALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVG 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 231 KSALIEGLALRIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQG 310
Cdd:TIGR03346 207 KTAIVEGLAQRIVNGDVPEGLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 311 GLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQ 390
Cdd:TIGR03346 287 AMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPSVEDTISILRGLKERYEVHHGVRITDPAIV 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 391 AAATLSERYLSGRQLPDKAIDVLDTACARVAINLSSPPKQISALTTLSHQQEAEIRQLERElriglRTDTSRmtEVLVQY 470
Cdd:TIGR03346 367 AAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKE-----KDEASK--KRLEDL 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 471 DETLTALDE----LEAAWHQQQTLVREIIALRQQLlgvaeddaaplpdadtvEDTQPEseseqdntgavpADEADREQPE 546
Cdd:TIGR03346 440 EKELADLEEeyaeLEEQWKAEKASIQGIQQIKEEI-----------------EQVRLE------------LEQAEREGDL 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 547 ETAetvSPVQ--RLAHLTAELDAL-----HNDRLLVSPHVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLTKWLGDTIK 619
Cdd:TIGR03346 491 AKA---AELQygKLPELEKQLQAAeqklgEEQNRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEELHERVV 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 620 GQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPP 699
Cdd:TIGR03346 568 GQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDSEDAMVRIDMSEYMEKHSVARLIGAPP 647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 700 GYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHA-- 777
Cdd:TIGR03346 648 GYVGYEEGGQLTEAVRRRPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDFIQELAgg 727
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 778 DDPETMQEVLYPVLADFFKPALLARM-EVVPYLPLSKETLATIIAGKLARLDNVLRSRfGAEVVIEPEVTDEIMSRVTRA 856
Cdd:TIGR03346 728 DDYEEMREAVMEVLRAHFRPEFLNRIdEIVVFHPLGREQIARIVEIQLGRLRKRLAER-KITLELSDAALDFLAEAGYDP 806
|
730
....*....|.
gi 446537020 857 ENGARMLESVI 867
Cdd:TIGR03346 807 VYGARPLKRAI 817
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
126-867 |
2.09e-168 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 511.14 E-value: 2.09e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 126 LRYIPPAAARLLT--GINRDRLQQDFVQWTQESAEsVVPDADGKGAGTLTdaadtlLARYAKNMTADARNGRLDPVLCRD 203
Cdd:CHL00095 113 LEEGEGVAARVLEnlGVDLSKIRSLILNLIGEIIE-AILGAEQSRSKTPT------LEEFGTNLTKEAIDGNLDPVIGRE 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 204 HEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMA 283
Cdd:CHL00095 186 KEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFD 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 284 EVISSPvPVILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAA 363
Cdd:CHL00095 266 EIQENN-NIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVE 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 364 EATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARVAINLSSPPKqisalttlshqqea 443
Cdd:CHL00095 345 ETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPP-------------- 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 444 EIRQLERELRiglrtdtsrmtEVLVQYDETLTALDELEAAwhqqQTLVREiIALRQQLlgvaeddAAPLPDADTVEDTQP 523
Cdd:CHL00095 411 AARELDKELR-----------EILKDKDEAIREQDFETAK----QLRDRE-MEVRAQI-------AAIIQSKKTEEEKRL 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 524 EseseqdntgavpadeadreqpeetaetvspvqrlahltaeldalhndrllvSPHVDKKQIAAVIAEWTGVPLNRLSQNE 603
Cdd:CHL00095 468 E---------------------------------------------------VPVVTEEDIAEIVSAWTGIPVNKLTKSE 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 604 MSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMS 683
Cdd:CHL00095 497 SEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMS 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 684 EFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFF 763
Cdd:CHL00095 577 EYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 764 LTSNLGYQVIV--------EHADDPETmqEVLYPVLAD--------FFKPALLARM-EVVPYLPLSKETLATIIAGKLAR 826
Cdd:CHL00095 657 MTSNLGSKVIEtnsgglgfELSENQLS--EKQYKRLSNlvneelkqFFRPEFLNRLdEIIVFRQLTKNDVWEIAEIMLKN 734
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 446537020 827 LDNVLRsrfgaEVVIEPEVTDEIMSRVTR-AEN---GARMLESVI 867
Cdd:CHL00095 735 LFKRLN-----EQGIQLEVTERIKTLLIEeGYNplyGARPLRRAI 774
|
|
| ClpA |
TIGR02639 |
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, ... |
163-868 |
8.38e-159 |
|
ATP-dependent Clp protease ATP-binding subunit clpA; [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 274241 [Multi-domain] Cd Length: 730 Bit Score: 483.37 E-value: 8.38e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 163 DADGKGAGTLTDAADTLLARYAKNMTADARNGRLDPVLCRDHEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRI 242
Cdd:TIGR02639 147 DQLGEEAGKEEEKGQDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIVEGLALRI 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 243 VAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVISSPVPvILFIDEAHTLIGAGNQQGG-LDISNLLKPA 321
Cdd:TIGR02639 227 AEGKVPERLKNAKIYSLDMGTLLAGTKYRGDFEERLKAVVSEIEKEPNA-ILFIDEIHTIVGAGATSGGsMDASNLLKPA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 322 LARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLS 401
Cdd:TIGR02639 306 LSSGKIRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYIN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 402 GRQLPDKAIDVLDTACARVAINLSSPPKQIsalttlshqqeaeirqlerelriglrtdtsrmtevlvqydetltaldele 481
Cdd:TIGR02639 386 DRFLPDKAIDVIDEAGAAFRLRPKAKKKAN-------------------------------------------------- 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 482 aawhqqqtlvreiialrqqllgvaeddaaplpdadtvedtqpeseseqdntgavpadeadreqpeetaetvspvqrlahl 561
Cdd:TIGR02639 --------------------------------------------------------------------------------
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 562 taeldalhndrllvsphVDKKQIAAVIAEWTGVPLNRLSQNEMSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRR 641
Cdd:TIGR02639 416 -----------------VNVKDIENVVAKMAKIPVKTVSSDDREQLKNLEKNLKAKIFGQDEAIDQLVSAIKRSRAGLGD 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 642 PGRPLGAFLLAGPSGVGKTETVLQLAELLygGRQYLtTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSV 721
Cdd:TIGR02639 479 PNKPVGSFLFVGPTGVGKTELAKQLAEEL--GVHLL-RFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCV 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 722 VLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQvivEHADDP-----ETMQEVLYPVLADFFK 796
Cdd:TIGR02639 556 LLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS---EMSKPPigfggENRESKSLKAIKKLFS 632
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446537020 797 PALLARME-VVPYLPLSKETLATIIAGKLARLDNVLRSRfgaevVIEPEVTDE----IMSRVTRAENGARMLESVID 868
Cdd:TIGR02639 633 PEFRNRLDaIIHFNDLSEEMAEKIVKKFLDELQDQLNEK-----NIELELTDDakkyLAEKGYDEEFGARPLARVIQ 704
|
|
| PRK10865 |
PRK10865 |
ATP-dependent chaperone ClpB; |
180-867 |
8.77e-155 |
|
ATP-dependent chaperone ClpB;
Pssm-ID: 182791 [Multi-domain] Cd Length: 857 Bit Score: 477.03 E-value: 8.77e-155
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 180 LARYAKNMTADARNGRLDPVLCRDHEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDKLKNTDIMTL 259
Cdd:PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 260 DLGALQAGASVKGEFEKRFKGLMAEVISSPVPVILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTIAATTWSEYK 339
Cdd:PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 340 KYFEKDAALSRRFQLVKVSEPNAAEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACAR 419
Cdd:PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 420 VAINLSSPPKQISALTTLSHQQEAEIRQLERELRIGLRTDTSRMTEVLVQYDETLTaldELEAAWHQQQTLVREIIALRQ 499
Cdd:PRK10865 401 IRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYS---ELEEEWKAEKASLSGTQTIKA 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 500 QLlgvaEDDAAPLPDADTVEDTQPESESEQdntGAVPADEadreqpeetaetvspvQRLAhlTAELDALHNDRLLVSpHV 579
Cdd:PRK10865 478 EL----EQAKIAIEQARRVGDLARMSELQY---GKIPELE----------------KQLA--AATQLEGKTMRLLRN-KV 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 580 DKKQIAAVIAEWTGVPLNRLSQNEMSVITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGK 659
Cdd:PRK10865 532 TDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGK 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 660 TETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFY 739
Cdd:PRK10865 612 TELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILL 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 740 QAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEH--ADDPETMQEVLYPVLADFFKPALLARM-EVVPYLPLSKETL 816
Cdd:PRK10865 692 QVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERfgELDYAHMKELVLGVVSHNFRPEFINRIdEVVVFHPLGEQHI 771
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 446537020 817 ATIIAGKLARLDNVLRSRfGAEVVIEPEVTDEIMSRVTRAENGARMLESVI 867
Cdd:PRK10865 772 ASIAQIQLQRLYKRLEER-GYEIHISDEALKLLSENGYDPVYGARPLKRAI 821
|
|
| clpA |
PRK11034 |
ATP-dependent Clp protease ATP-binding subunit; Provisional |
133-771 |
1.37e-110 |
|
ATP-dependent Clp protease ATP-binding subunit; Provisional
Pssm-ID: 236828 [Multi-domain] Cd Length: 758 Bit Score: 357.99 E-value: 1.37e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 133 AARLLTGINRDRLqqDFVQWTQESAESVVPDADGKGAGTLTD----AADTLLARYAKNMTADARNGRLDPVLCRDHEIDL 208
Cdd:PRK11034 120 AAYLLRKHEVSRL--DVVNFISHGTRKDEPSQSSDPGSQPNSeeqaGGEERMENFTTNLNQLARVGGIDPLIGREKELER 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 209 MIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEvISS 288
Cdd:PRK11034 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ-LEQ 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 289 PVPVILFIDEAHTLIGAGNQQGG-LDISNLLKPALARGELKTIAATTWSEYKKYFEKDAALSRRFQLVKVSEPNAAEATI 367
Cdd:PRK11034 277 DTNSILFIDEIHTIIGAGAASGGqVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQ 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 368 ILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARvainlssppkqisalttlshqqeaeirq 447
Cdd:PRK11034 357 IINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR---------------------------- 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 448 lerelriglrtdtSRMTEVlvqydetltaldeleaawhqqqtlvreiiALRQQLLGVAEddaaplpdadtvedtqpeses 527
Cdd:PRK11034 409 -------------ARLMPV-----------------------------SKRKKTVNVAD--------------------- 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 528 eqdntgavpadeadreqpeetaetvspvqrlahltaeldalhndrllvsphvdkkqIAAVIAEWTGVPLNRLSQNEMSVI 607
Cdd:PRK11034 426 --------------------------------------------------------IESVVARIARIPEKSVSQSDRDTL 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 608 TDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLyggRQYLTTINMSEFQE 687
Cdd:PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYME 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 688 KHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSN 767
Cdd:PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606
|
....
gi 446537020 768 LGYQ 771
Cdd:PRK11034 607 AGVR 610
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
607-808 |
3.48e-74 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 240.93 E-value: 3.48e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 607 ITDLTKWLGDTIKGQDLAIASLHKHLLTARADLRRPGRPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQ 686
Cdd:cd19499 2 LLNLEERLHERVVGQDEAVKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFGDEDNLIRIDMSEYM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 687 EKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTS 766
Cdd:cd19499 82 EKHSVSRLIGAPPGYVGYTEGGQLTEAVRRKPYSVVLLDEIEKAHPDVQNLLLQVLDDGRLTDSHGRTVDFKNTIIIMTS 161
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446537020 767 NlgyqvivehaddpetmqevlypvladFFKPALLARMEVVPY 808
Cdd:cd19499 162 N--------------------------HFRPEFLNRIDEIVV 177
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
644-806 |
7.61e-57 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 192.80 E-value: 7.61e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 644 RPLGAFLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVL 723
Cdd:pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 724 LDEVEKAHPDVLNLFYQAFDKGEMADGEGRLIDCKNIVFFLTSNLGYQVIVEHA-----DDPETMQEVLYPVLADFFKPA 798
Cdd:pfam07724 81 IDEIEKAHPGVQNDLLQILEGGTLTDKQGRTVDFKNTLFIMTGNFGSEKISDASrlgdsPDYELLKEEVMDLLKKGFIPE 160
|
....*...
gi 446537020 799 LLARMEVV 806
Cdd:pfam07724 161 FLGRLPII 168
|
|
| AAA_lid_9 |
pfam17871 |
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ... |
363-453 |
1.23e-32 |
|
AAA lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 465544 [Multi-domain] Cd Length: 104 Bit Score: 121.83 E-value: 1.23e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 363 AEATIILRGLSAVYEQSHGVLIDDDALQAAATLSERYLSGRQLPDKAIDVLDTACARVAINLSSPPKQISALttlshqqE 442
Cdd:pfam17871 3 EEAIEILRGLKPKYEKHHGVRISDEALEAAVKLSKRYITDRFLPDKAIDLLDEACARVRLSQESKPEELEDL-------E 75
|
90
....*....|.
gi 446537020 443 AEIRQLERELR 453
Cdd:pfam17871 76 RELAKLEIEKE 86
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
202-355 |
6.49e-14 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 69.87 E-value: 6.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 202 RDHEIDLMIDILCRRRKNNPVVVGEAGVGKSALIEGLALRIVagqvpdkLKNTDIMTLDLGALQAGASVKGEFEKRFKGL 281
Cdd:cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-------RPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446537020 282 MAEVISSPVPVILFIDEAHTLiGAGNQQGGLDISNLLKPALA-RGELKTIAATTwseYKKYFEKDAALSRRFQLV 355
Cdd:cd00009 76 LFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIdRENVRVIGATN---RPLLGDLDRALYDRLDIR 146
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
619-767 |
4.02e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 64.86 E-value: 4.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 619 KGQDLAIASLhkhlltARADLRRPGRPLgafLLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLIGSP 698
Cdd:cd00009 1 VGQEEAIEAL------REALELPPPKNL---LLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF 71
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446537020 699 pgyvgygEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEMadgegRLIDCKNIVFFLTSN 767
Cdd:cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLND-----LRIDRENVRVIGATN 128
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
649-771 |
7.41e-11 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 60.77 E-value: 7.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 649 FLLAGPSGVGKTETVLQLAELLYGGRqyLTTINMSEFQekhTVSRLIGS--PPGYVGYGEGGVLTEAIRQKpySVVLLDE 726
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLAAALSNRP--VFYVQLTRDT---TEEDLFGRrnIDPGGASWVDGPLVRAAREG--EIAVLDE 74
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 446537020 727 VEKAHPDVLNLFYQAFDKGEMADGEGR-LIDCK--NIVFFLTSNLGYQ 771
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLLPDGGeLVKAApdGFRLIATMNPLDR 122
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
217-355 |
2.23e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 217 RKNNPVVVGEAGVGKSALIEGLALRIVAGQVPDKLKNTDIMTLDLGALQAGASVK-----GEFEKRFKGLMAEvISSPVP 291
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGgkkasGSGELRLRLALAL-ARKLKP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446537020 292 VILFIDEAHTLIGAGNQQGGLDI--SNLLKPALARGELKTIAATTWSEykkyFEKDAALSRRFQLV 355
Cdd:smart00382 80 DVLILDEITSLLDAEQEALLLLLeeLRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRR 141
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
650-773 |
3.15e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 3.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 650 LLAGPSGVGKTETVLQLAELLYGGRQYLTTINMSEFQEKHTVSRLI----GSPPGYVGYGEGGVLTEAIRQKPYSVVLLD 725
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLiivgGKKASGSGELRLRLALALARKLKPDVLILD 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 446537020 726 EVEKAHPDVLNLFYQafdKGEMADGEGRLIDCKNIVFFLTSNLGYQVI 773
Cdd:smart00382 86 EITSLLDAEQEALLL---LLEELRLLLLLKSEKNLTVILTTNDEKDLG 130
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
223-353 |
5.17e-07 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 49.51 E-value: 5.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 223 VVGEAGVGKSALIeglalRIVAGQVpdklkNTDIMTLDLGALqaGASVKGEFEKRFKGLMaEVISSPVPVILFIDEAHTL 302
Cdd:pfam00004 3 LYGPPGTGKTTLA-----KAVAKEL-----GAPFIEISGSEL--VSKYVGESEKRLRELF-EAAKKLAPCVIFIDEIDAL 69
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 303 IGAGNQQG---GLDISNLLKPALARGELKT-----IAATTwseykkYFEK-DAALSRRFQ 353
Cdd:pfam00004 70 AGSRGSGGdseSRRVVNQLLTELDGFTSSNskvivIAATN------RPDKlDPALLGRFD 123
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
631-768 |
1.16e-05 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 46.51 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 631 HLLTARADLRRPGRPLGA-FLLAGPSGVGKTETVLQLAELLyggRQYLTTINMSEFQEKH--TVSRLIGSppgyvgygeg 707
Cdd:cd19481 10 EAPRRGSRLRRYGLGLPKgILLYGPPGTGKTLLAKALAGEL---GLPLIVVKLSSLLSKYvgESEKNLRK---------- 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446537020 708 gvLTEAIRQKPYSVVLLDEVEKAHPD------------VLNLFYQafdkgEMADGEGrlidCKNIVFFLTSNL 768
Cdd:cd19481 77 --IFERARRLAPCILFIDEIDAIGRKrdssgesgelrrVLNQLLT-----ELDGVNS----RSKVLVIAATNR 138
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
198-300 |
5.90e-04 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 41.72 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 198 PVLCRDHEIDLMIDILCRRRKNNP---VVVGEAGVGKSALIEGLALRIVA----------------GQVPDKLKNTDIM- 257
Cdd:pfam13191 1 RLVGREEELEQLLDALDRVRSGRPpsvLLTGEAGTGKTTLLRELLRALERdggyflrgkcdenlpySPLLEALTREGLLr 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446537020 258 ---------------TLDLGALQAGASVKGEFEKRFKGLMAEVIS----SPVPVILFIDEAH 300
Cdd:pfam13191 81 qlldelesslleawrAALLEALAPVPELPGDLAERLLDLLLRLLDllarGERPLVLVLDDLQ 142
|
|
| ClpB_D2-small |
smart01086 |
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, ... |
811-871 |
7.32e-04 |
|
C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2.
Pssm-ID: 198154 [Multi-domain] Cd Length: 90 Bit Score: 39.35 E-value: 7.32e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446537020 811 LSKETLATIIAGKLARLDNVLRSRfGAEVVIEPEVTDEIMSRVTRAENGARMLESVIDGDM 871
Cdd:smart01086 1 LDKEDLVRIVDLPLNALQKRLAEK-GITLEFTDEALDWLAEKGYDPKYGARPLRRIIQREL 60
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
222-302 |
1.43e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 41.31 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 222 VVVGEAGVGKS----ALIEGLALRIVAGQVPD-KLKNTDIMT---LDLGALQAGASvKGEFEKRFKGLMAEVISSPVPVI 293
Cdd:COG3267 47 VLTGEVGTGKTtllrRLLERLPDDVKVAYIPNpQLSPAELLRaiaDELGLEPKGAS-KADLLRQLQEFLLELAAAGRRVV 125
|
....*....
gi 446537020 294 LFIDEAHTL 302
Cdd:COG3267 126 LIIDEAQNL 134
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
650-811 |
2.29e-03 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 39.11 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 650 LLAGPSGVGKTETVLQLAELLygGRQYLtTINMSEFQEKH---TVSRLIGsppgyvgygeggvLTEAIRQKPYSVVLLDE 726
Cdd:pfam00004 2 LLYGPPGTGKTTLAKAVAKEL--GAPFI-EISGSELVSKYvgeSEKRLRE-------------LFEAAKKLAPCVIFIDE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 727 VEKAHP-----------DVLNLFYQAFDkgemadgeGRLIDCKNIVFFLTSNlgyqviveHADDPEtmqevlypvladff 795
Cdd:pfam00004 66 IDALAGsrgsggdsesrRVVNQLLTELD--------GFTSSNSKVIVIAATN--------RPDKLD-------------- 115
|
170
....*....|....*.
gi 446537020 796 kPALLARMEVVPYLPL 811
Cdd:pfam00004 116 -PALLGRFDRIIEFPL 130
|
|
| RecA-like_Ycf46-like |
cd19507 |
ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of ... |
224-310 |
2.87e-03 |
|
ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of photosynthesis in cyanobacteria, especially in CO2 uptake and utilization. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410915 [Multi-domain] Cd Length: 161 Bit Score: 39.27 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 224 VGEAGVGKSaliegLALRIVAGQVpdklkNTDIMTLDLGALQAGasVKGEFEKRFKGLM--AEVISspvPVILFIDEAHT 301
Cdd:cd19507 37 VGIQGTGKS-----LTAKAIAGVW-----QLPLLRLDMGRLFGG--LVGESESRLRQMIqtAEAIA---PCVLWIDEIEK 101
|
....*....
gi 446537020 302 LIGAGNQQG 310
Cdd:cd19507 102 GFSNADSKG 110
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
215-302 |
6.23e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 37.71 E-value: 6.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446537020 215 RRRKNNPVVVGEAGVGKSALIEGLALRIVAGQ-------VPDKLKNTDIMTLDLGALQAGASVKGEFEKRFKGLMAEVIS 287
Cdd:pfam13401 2 RFGAGILVLTGESGTGKTTLLRRLLEQLPEVRdsvvfvdLPSGTSPKDLLRALLRALGLPLSGRLSKEELLAALQQLLLA 81
|
90
....*....|....*
gi 446537020 288 SPVPVILFIDEAHTL 302
Cdd:pfam13401 82 LAVAVVLIIDEAQHL 96
|
|
| |
