|
Name |
Accession |
Description |
Interval |
E-value |
| trans_reg_YgbI |
NF040890 |
DNA-binding transcriptional repressor YgbI; |
1-253 |
8.71e-163 |
|
DNA-binding transcriptional repressor YgbI;
Pssm-ID: 468826 [Multi-domain] Cd Length: 253 Bit Score: 450.82 E-value: 8.71e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA 80
Cdd:NF040890 1 MIPVERHQQILALVAERGVVSIAELTERLGVSHMTIRRDLQKLEQQGAVLSVSGGVQSPERLAQEPSHQDKEAMASRQKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 81 AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATL 160
Cdd:NF040890 81 AIGQLAAQQIPPNSCIYLDAGTTTLALARHLAERQDLTVVTNDFVIADYLIENSQCTIIHTGGAVCRENRSCVGEAAAQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 161 LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR 240
Cdd:NF040890 161 LRNLFIDIAFISASSWSMRGLSTPSEDKVAVKRAIVEASRQRVLLCDTSKYGKIATYLALPMTVFDTIITDDGLPEAAKE 240
|
250
....*....|...
gi 446535833 241 ALAKVDISLLMAK 253
Cdd:NF040890 241 ALEKAGISLLLAK 253
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-253 |
2.93e-96 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 282.41 E-value: 2.93e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA 80
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 81 AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATL 160
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 161 LRGLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAI 239
Cdd:COG1349 161 LRRFRADKAFLGASGIDAeGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|....
gi 446535833 240 RALAKVDISLLMAK 253
Cdd:COG1349 241 EALEEAGVEVIVAE 254
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
78-231 |
1.09e-59 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 185.79 E-value: 1.09e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 78 QKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAA 157
Cdd:pfam00455 5 EKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGPLA 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446535833 158 ATLLRGLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTD 231
Cdd:pfam00455 85 EEFLRQFNVDKAFIGANGIDLeGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
5-252 |
7.57e-41 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 140.87 E-value: 7.57e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 5 ERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGG--VQSSTRVAHEPSHQIKTELATPQKAAI 82
Cdd:NF040755 6 ERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGalINDGFIPGAEPSVEDKSRLNTAVKRLI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 83 GKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATLLR 162
Cdd:NF040755 86 AAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSFYGDQAEQSLQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 163 GLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIRA 241
Cdd:NF040755 166 NYHFDKLFLGVDGFDLeRGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPEEYLQG 245
|
250
....*....|.
gi 446535833 242 LAKVDISLLMA 252
Cdd:NF040755 246 LRKLGVEVILV 256
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
4-253 |
1.16e-39 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 138.06 E-value: 1.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 4 TERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGG--VQSSTRVAHEPSHQIKTELATPQKAA 81
Cdd:PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGalICDSTTPSVEPSVEDKSALNTAMKRS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 82 IGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATLL 161
Cdd:PRK09802 96 VAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 162 RGLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR 240
Cdd:PRK09802 176 QNYHFDMLFLGVDAIDLeRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLE 255
|
250
....*....|...
gi 446535833 241 ALAKVDISLLMAK 253
Cdd:PRK09802 256 GLRKAGVEVILVG 268
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-58 |
1.59e-18 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 76.49 E-value: 1.59e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 446535833 6 RRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQS 58
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAVS 53
|
|
| Tau138_eWH |
cd16169 |
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits ... |
6-74 |
9.78e-05 |
|
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits of the tauB subcomplex of yeast transcription factor IIIC. This extended winged-helix domain of tau138 appears to interact with the TPR (tetratricopeptide repeat) array of tauA subunit tau131, and may therefore play a role in linking tauA, tauB, and TFIIIB to regulate the formation of the RNA polymerase III pre-initiation complex.
Pssm-ID: 320085 Cd Length: 97 Bit Score: 40.26 E-value: 9.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 6 RRQIILDMVAEKGIVS------IAELTERMHVSHM----TIRRDLQKLEQQGA--VIQVSGGVQSSTR------VAHEPS 67
Cdd:cd16169 7 RENEILEVLKELGGVVnlekkfLEEHEKLLGSLTRmdkkTLKRDLNKLEEEGKlkVITTSVPAVGDGRsrtvlyLPDPSV 86
|
....*..
gi 446535833 68 HQIKTEL 74
Cdd:cd16169 87 EPLDPLL 93
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| trans_reg_YgbI |
NF040890 |
DNA-binding transcriptional repressor YgbI; |
1-253 |
8.71e-163 |
|
DNA-binding transcriptional repressor YgbI;
Pssm-ID: 468826 [Multi-domain] Cd Length: 253 Bit Score: 450.82 E-value: 8.71e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA 80
Cdd:NF040890 1 MIPVERHQQILALVAERGVVSIAELTERLGVSHMTIRRDLQKLEQQGAVLSVSGGVQSPERLAQEPSHQDKEAMASRQKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 81 AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATL 160
Cdd:NF040890 81 AIGQLAAQQIPPNSCIYLDAGTTTLALARHLAERQDLTVVTNDFVIADYLIENSQCTIIHTGGAVCRENRSCVGEAAAQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 161 LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR 240
Cdd:NF040890 161 LRNLFIDIAFISASSWSMRGLSTPSEDKVAVKRAIVEASRQRVLLCDTSKYGKIATYLALPMTVFDTIITDDGLPEAAKE 240
|
250
....*....|...
gi 446535833 241 ALAKVDISLLMAK 253
Cdd:NF040890 241 ALEKAGISLLLAK 253
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
1-253 |
2.93e-96 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 282.41 E-value: 2.93e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKA 80
Cdd:COG1349 1 MLAEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSSAAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 81 AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATL 160
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 161 LRGLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAI 239
Cdd:COG1349 161 LRRFRADKAFLGASGIDAeGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|....
gi 446535833 240 RALAKVDISLLMAK 253
Cdd:COG1349 241 EALEEAGVEVIVAE 254
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
78-231 |
1.09e-59 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 185.79 E-value: 1.09e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 78 QKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAA 157
Cdd:pfam00455 5 EKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGPLA 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446535833 158 ATLLRGLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTD 231
Cdd:pfam00455 85 EEFLRQFNVDKAFIGANGIDLeGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITD 159
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
5-252 |
7.57e-41 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 140.87 E-value: 7.57e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 5 ERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGG--VQSSTRVAHEPSHQIKTELATPQKAAI 82
Cdd:NF040755 6 ERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGalINDGFIPGAEPSVEDKSRLNTAVKRLI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 83 GKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATLLR 162
Cdd:NF040755 86 AAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSFYGDQAEQSLQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 163 GLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIRA 241
Cdd:NF040755 166 NYHFDKLFLGVDGFDLeRGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPEEYLQG 245
|
250
....*....|.
gi 446535833 242 LAKVDISLLMA 252
Cdd:NF040755 246 LRKLGVEVILV 256
|
|
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
4-253 |
1.16e-39 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 138.06 E-value: 1.16e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 4 TERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGG--VQSSTRVAHEPSHQIKTELATPQKAA 81
Cdd:PRK09802 16 SERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGalICDSTTPSVEPSVEDKSALNTAMKRS 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 82 IGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATLL 161
Cdd:PRK09802 96 VAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 162 RGLMIDQAFISASSWSV-RGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIR 240
Cdd:PRK09802 176 QNYHFDMLFLGVDAIDLeRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLE 255
|
250
....*....|...
gi 446535833 241 ALAKVDISLLMAK 253
Cdd:PRK09802 256 GLRKAGVEVILVG 268
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
1-252 |
1.21e-37 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 132.50 E-value: 1.21e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSStRVAHEPSHQIKTELATPQKA 80
Cdd:PRK10434 1 MKPRQRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVLN-KEESDPPIDHKTLINTHKKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 81 AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMD-NSDCTIIHTGGAVCRENRSCVGEAAAT 159
Cdd:PRK10434 80 LIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSElDNEQTILMPGGTFRKKSASFHGQLAEN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 160 LLRGLMIDQAFISASSWSVR-GISTPAEdKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESA 238
Cdd:PRK10434 160 AFEHFTFDKLFIGTDGIDLNaGVTTFNE-VYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPAF 238
|
250
....*....|....
gi 446535833 239 IRALAKVDISLLMA 252
Cdd:PRK10434 239 RQALEEKGIEVIIT 252
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
1-249 |
1.04e-25 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 101.09 E-value: 1.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTeLATPQKA 80
Cdd:PRK10906 1 MKQTQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSSSVNTPWHDRKA-TQTEEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 81 AIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAATL 160
Cdd:PRK10906 80 RIARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATLDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 161 LRGLMIDQAFISASSWSVRGiSTPAED--KVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESA 238
Cdd:PRK10906 160 ISQFRLDFGILGISGIDSDG-SLLEFDyhEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPASV 238
|
250
....*....|.
gi 446535833 239 IRALAKVDISL 249
Cdd:PRK10906 239 MQVIEDHHVQL 249
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
1-242 |
1.25e-18 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 82.36 E-value: 1.25e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGV----QSSTRVAHEPSHQIKTElat 76
Cdd:PRK13509 1 MTEAQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAeaitQQRPRWTPMNIHQAQNH--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 77 PQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNkLTVVTNDFVIADYLMDNSDCTIIHTGGavcRENRScvgeA 156
Cdd:PRK13509 78 DEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCGKP-VQIITNYLPLANYLIDQEHDSVIIMGG---QYNKS----Q 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 157 AATLlrGLMIDQAFISASSW---SVRGISTPAEDKVTVKRAVAsasRQKIL--------VCDATKYGQVATWLALPLAEF 225
Cdd:PRK13509 150 SITL--SPQGSENSLYAGHWmftSGKGLTADGLYKTDMLTAMA---EQKMLsvvgklvvLVDSSKIGERAGMLFSRADQI 224
|
250
....*....|....*..
gi 446535833 226 NQIVTDDGLPESAIRAL 242
Cdd:PRK13509 225 DMLITGKNADPEVLQQL 241
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
6-58 |
1.59e-18 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 76.49 E-value: 1.59e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 446535833 6 RRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQS 58
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGAVS 53
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
4-231 |
5.67e-18 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 80.23 E-value: 5.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 4 TERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSG---GVQSSTRVAHEPSH-QIKTELAtpQK 79
Cdd:PRK10411 3 AARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGrakYIHRQNQDSGDPFHiRLKSHYA--HK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 80 AAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNkLTVVTNDFVIADYLMDNSDCTIIHTGGAVCRENRSCVGEAAAT 159
Cdd:PRK10411 81 ADIAREALAWIEEGMVIALDASSTCWYLARQLPDIN-IQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNPSLIS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 160 LLRGLMIDqAFI--------SASSWSVRGIStpAEDK-VTVKRAVasasrQKILVCDATKYGQVATWLALPLAEFNQIVT 230
Cdd:PRK10411 160 QLKSLEID-LFIfscegidsSGALWDSNAIN--ADYKsMLLKRAA-----QSLLLIDKSKFNRSGEARIGHLDEVTHIIS 231
|
.
gi 446535833 231 D 231
Cdd:PRK10411 232 D 232
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
31-250 |
9.57e-18 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 79.74 E-value: 9.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 31 VSHMTIRRDLQKleQQGAVIQVSGGVQSSTRVAhepSHQI----KTELATpQKAAIGKLAASLVQPESCIYLDAGTTTLA 106
Cdd:PRK10681 33 VSEMTIRRDLNA--HSAPVVLLGGYIVLEPRSA---SHYLlsdqKSRLVE-EKRRAAQLAATLVEPNQTLFFDCGTTTPW 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 107 IARQLVTMNKLTVVT---NDFVIadyLMDNSDCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVR-GIS 182
Cdd:PRK10681 107 IIEAIDNELPFTAVCyslNTFLA---LQEKPHCRAILCGGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSkGAT 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446535833 183 TPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALPLAEFNQIVTDDgLPESAIRALAKV-DISLL 250
Cdd:PRK10681 184 CFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDR-CPDDEFVKYAQAqRIKLM 251
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
6-62 |
4.26e-13 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 62.28 E-value: 4.26e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 446535833 6 RRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRV 62
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSNSST 57
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
4-49 |
1.07e-05 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 45.30 E-value: 1.07e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 446535833 4 TERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAV 49
Cdd:COG2345 12 DPTRRRILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLV 57
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
1-56 |
1.20e-05 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 45.45 E-value: 1.20e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 446535833 1 MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGV 56
Cdd:COG2378 1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELGVPIEAERGR 56
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
7-56 |
1.39e-05 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 41.65 E-value: 1.39e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 446535833 7 RQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGV 56
Cdd:pfam08279 1 LQILQLLLEARGPISGQELAEKLGVSRRTIRRDIKILEELGVPIEAEPGR 50
|
|
| Tau138_eWH |
cd16169 |
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits ... |
6-74 |
9.78e-05 |
|
extended winged-helix domain of tau138 and related proteins; Tau138 is one of three subunits of the tauB subcomplex of yeast transcription factor IIIC. This extended winged-helix domain of tau138 appears to interact with the TPR (tetratricopeptide repeat) array of tauA subunit tau131, and may therefore play a role in linking tauA, tauB, and TFIIIB to regulate the formation of the RNA polymerase III pre-initiation complex.
Pssm-ID: 320085 Cd Length: 97 Bit Score: 40.26 E-value: 9.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446535833 6 RRQIILDMVAEKGIVS------IAELTERMHVSHM----TIRRDLQKLEQQGA--VIQVSGGVQSSTR------VAHEPS 67
Cdd:cd16169 7 RENEILEVLKELGGVVnlekkfLEEHEKLLGSLTRmdkkTLKRDLNKLEEEGKlkVITTSVPAVGDGRsrtvlyLPDPSV 86
|
....*..
gi 446535833 68 HQIKTEL 74
Cdd:cd16169 87 EPLDPLL 93
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
3-46 |
4.03e-04 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 41.38 E-value: 4.03e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 446535833 3 PTERRQIILDMVAEKG-IVSIAELTERMHVSHMTIRRDLQKLEQQ 46
Cdd:COG3711 79 PKERVAYILLRLLLAGdPISLDDLAEELFVSRSTILNDLKKIEKI 123
|
|
| WHTH_GntR |
cd07377 |
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ... |
7-63 |
1.11e-03 |
|
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.
Pssm-ID: 153418 [Multi-domain] Cd Length: 66 Bit Score: 36.66 E-value: 1.11e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 446535833 7 RQIILDMVAEKG--IVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGgvqSSTRVA 63
Cdd:cd07377 11 REAILSGELKPGdrLPSERELAEELGVSRTTVREALRELEAEGLVERRPG---RGTFVA 66
|
|
| MngR |
COG2188 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
21-69 |
2.28e-03 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441791 [Multi-domain] Cd Length: 238 Bit Score: 38.30 E-value: 2.28e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446535833 21 SIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGgvqSSTRVAHEPSHQ 69
Cdd:COG2188 31 SERELAEEFGVSRMTVRKALDELVEEGLLERRQG---RGTFVAEPKIEY 76
|
|
| GntR |
pfam00392 |
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ... |
21-62 |
3.52e-03 |
|
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.
Pssm-ID: 306822 [Multi-domain] Cd Length: 64 Bit Score: 34.90 E-value: 3.52e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446535833 21 SIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGgvqSSTRV 62
Cdd:pfam00392 26 SERELAAEFGVSRTTVREALRRLEAEGLVERRQG---RGTFV 64
|
|
| MntR |
COG1321 |
Mn-dependent transcriptional regulator MntR, DtxR family [Transcription]; |
10-55 |
3.56e-03 |
|
Mn-dependent transcriptional regulator MntR, DtxR family [Transcription];
Pssm-ID: 440932 [Multi-domain] Cd Length: 135 Bit Score: 36.72 E-value: 3.56e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 446535833 10 ILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGG 55
Cdd:COG1321 15 IYELSEEGGPVRTSDIAERLGVSPPSVTEMLKKLEEKGLVEYEPYG 60
|
|
| Fe_dep_repress |
pfam01325 |
Iron dependent repressor, N-terminal DNA binding domain; This family includes the Diphtheria ... |
10-50 |
4.68e-03 |
|
Iron dependent repressor, N-terminal DNA binding domain; This family includes the Diphtheria toxin repressor. DNA binding is through a helix-turn-helix motif.
Pssm-ID: 396062 [Multi-domain] Cd Length: 57 Bit Score: 34.66 E-value: 4.68e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 446535833 10 ILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVI 50
Cdd:pfam01325 10 IYTLSEEKGVVKTKDLAERLNVSPSTVSEMLKKLEKMGYVD 50
|
|
| |
