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Conserved domains on  [gi|446520367|ref|WP_000597713|]
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MULTISPECIES: fimbrial protein [Enterobacteriaceae]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
23-177 7.01e-25

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 94.72  E-value: 7.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  23 DVAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENChATAVGKIVTLTFKGTEEAALPGHLKV 102
Cdd:COG3539   25 TVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNC-DAGTSNSVKVTFTGTADSANPGLLAN 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446520367 103 TGVN-AGRLGIALLDTDGSSlLKPGTShnkGQGEKVTGN-SLELPFGAYVVATpealrTKSVVPGDYEATATFELTY 177
Cdd:COG3539  104 TGSGgASGVGIQLLDSDGTP-IPLGTP---SSAVTLTSNgSATLPFYARYVAT-----GATVTAGSFNATATFTIDY 171
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
23-177 7.01e-25

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 94.72  E-value: 7.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  23 DVAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENChATAVGKIVTLTFKGTEEAALPGHLKV 102
Cdd:COG3539   25 TVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNC-DAGTSNSVKVTFTGTADSANPGLLAN 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446520367 103 TGVN-AGRLGIALLDTDGSSlLKPGTShnkGQGEKVTGN-SLELPFGAYVVATpealrTKSVVPGDYEATATFELTY 177
Cdd:COG3539  104 TGSGgASGVGIQLLDSDGTP-IPLGTP---SSAVTLTSNgSATLPFYARYVAT-----GATVTAGSFNATATFTIDY 171
PRK15210 PRK15210
fimbrial protein;
24-177 7.70e-14

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 66.26  E-value: 7.70e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  24 VAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENC--------HATAVGKI--VTLTFKGTEE 93
Cdd:PRK15210  37 ILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCafdpnipdTAGSAGKMskVTVSFSGTAN 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  94 AAlpGHLKVTGVNAGRLGIALLDTDGSSLLKPGTSHNKGQGEKVTGNSLELPFGAYVVATpealrTKSVVPGDYEATATF 173
Cdd:PRK15210 117 TS--KKAYTTSGSAQHVGVQLLKSDNTSIIEPNTPMPDGDAQQLQAGNNELNFFARLIAL-----DNGVTPGDFNASVTY 189


                 ....
gi 446520367 174 ELTY 177
Cdd:PRK15210 190 TLKY 193
Fimbrial pfam00419
Fimbrial protein;
24-178 1.82e-11

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 58.99  E-value: 1.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367   24 VAFRGNLLDRP--CHVSgDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLeNCHATAVGKIVTLTFKGTEEAALPGHLK 101
Cdd:pfam00419   1 INFTGTVTRVPatCKIT-AGTPIEVDFGQIPVNELNAGGEGSRQKPFSITL-ECSSGSSAVKVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446520367  102 VTGV--NAGRLGIALLDTDGSSLlKPGTSHNKGQGEKVTGNSLELPFGAYVVATPealrTKSVVPGDYEATATFELTYR 178
Cdd:pfam00419  79 TGNGagAATGVGIRLYDANGGAL-PPNNGTSSIPVSATAAVATGITFTASLVATT----GGTPTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
23-177 7.01e-25

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 94.72  E-value: 7.01e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  23 DVAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENChATAVGKIVTLTFKGTEEAALPGHLKV 102
Cdd:COG3539   25 TVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNC-DAGTSNSVKVTFTGTADSANPGLLAN 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446520367 103 TGVN-AGRLGIALLDTDGSSlLKPGTShnkGQGEKVTGN-SLELPFGAYVVATpealrTKSVVPGDYEATATFELTY 177
Cdd:COG3539  104 TGSGgASGVGIQLLDSDGTP-IPLGTP---SSAVTLTSNgSATLPFYARYVAT-----GATVTAGSFNATATFTIDY 171
PRK15210 PRK15210
fimbrial protein;
24-177 7.70e-14

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 66.26  E-value: 7.70e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  24 VAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENC--------HATAVGKI--VTLTFKGTEE 93
Cdd:PRK15210  37 ILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCafdpnipdTAGSAGKMskVTVSFSGTAN 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  94 AAlpGHLKVTGVNAGRLGIALLDTDGSSLLKPGTSHNKGQGEKVTGNSLELPFGAYVVATpealrTKSVVPGDYEATATF 173
Cdd:PRK15210 117 TS--KKAYTTSGSAQHVGVQLLKSDNTSIIEPNTPMPDGDAQQLQAGNNELNFFARLIAL-----DNGVTPGDFNASVTY 189


                 ....
gi 446520367 174 ELTY 177
Cdd:PRK15210 190 TLKY 193
Fimbrial pfam00419
Fimbrial protein;
24-178 1.82e-11

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 58.99  E-value: 1.82e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367   24 VAFRGNLLDRP--CHVSgDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLeNCHATAVGKIVTLTFKGTEEAALPGHLK 101
Cdd:pfam00419   1 INFTGTVTRVPatCKIT-AGTPIEVDFGQIPVNELNAGGEGSRQKPFSITL-ECSSGSSAVKVTVGLFGTADASSPNLLL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446520367  102 VTGV--NAGRLGIALLDTDGSSLlKPGTSHNKGQGEKVTGNSLELPFGAYVVATPealrTKSVVPGDYEATATFELTYR 178
Cdd:pfam00419  79 TGNGagAATGVGIRLYDANGGAL-PPNNGTSSIPVSATAAVATGITFTASLVATT----GGTPTAGDFNATATIVVDYQ 152
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 18-177 1.71e-07

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 48.56  E-value: 1.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  18 QAIASDVAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENCHATAVGkiVTLTFKGTEEAALP 97
Cdd:PRK15191  19 QAHDGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASG--VTVSFSGAADSRNT 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  98 GHLKVTG--VNAGRLGIALLDTDgSSLLKPG-----TSHNKGQGekvtgnSLELPFGAYVVATpealrTKSVVPGDYEAT 170
Cdd:PRK15191  97 DLLALTAgeSDASGIGIALYDQN-KTLIPLGqesdvVTLSPGQA------SAHLQFYARYLAD-----GGAVTPGDANAS 164


                 ....*..
gi 446520367 171 ATFELTY 177
Cdd:PRK15191 165 ATFILAY 171
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 24-177 4.19e-07

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 47.66  E-value: 4.19e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  24 VAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENCHATAVGKiVTLTFKGTEEAALPGHLKVT 103
Cdd:PRK15209  28 VKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCDITTNKK-VNVSFNGVGDADDSTLVSVS 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367 104 GVNAGRLGIALLDTDGSSLL------KPGTSHNKGQgekvtgnsLELPFGAYVVATPEALRTksvvpGDYEATATFELTY 177
Cdd:PRK15209 107 TEAGAATGVGIGIYDNANTLvelntgKSTTTLAAGQ--------TVLYFTANYVSTKDTVTT-----GYGNAEVDFNLSY 173
PRK15260 PRK15260
fimbrial protein SteF; Provisional
 19-178 9.17e-04

fimbrial protein SteF; Provisional


Pssm-ID: 185168  Cd Length: 178  Bit Score: 38.14  E-value: 9.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  19 AIASDVAFRGNLLDRPCHVSGDSLNKHVV-FKTRASRDFwYPPGRSPTESFVIRLENCHaTAVGKIVTLTFKGTEEAALP 97
Cdd:PRK15260  26 AATPNVHYSGKLVAGACNLVVDNDTMATVdFHTIGSDNF-DASGQTTPVPFTLSLQDCK-TALANGVLVTFQGVEDSTLP 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  98 GHLKV---TGVNAGRLGIALLDTDGSSLlkpgtshnkgqgEKVTGNSLELPFGAYVVATPEALRTKS---VVPGDYEATA 171
Cdd:PRK15260 104 GLLALepsSEASGFAIGVETAAQQPVSI------------NATVGTAFVLKEGITTINLQARLQKYAgeeVMPGEFSGSA 171


                 ....*..
gi 446520367 172 TFELTYR 178
Cdd:PRK15260 172 TVSFEYQ 178
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 24-177 1.16e-03

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 37.77  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  24 VAFRGNLLDRPCHVSGDSLNkhVVFKTRASRDFWYPPGRSPTESFVIRLENCHATAVGKiVTLTFKGTEEAALPGHLKVT 103
Cdd:PRK15300  31 VHITGLIKQNACTVKTDSVE--VTLQEEFASLFTAAGQTAGDTDFTIELENCDANVYSS-VQARFEGTLDGTDATILKNE 107

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446520367 104 GvNAGRLGIALLDTDGSSL----LKPGTSH-NKGQGEKVTgnSLELPFGAYVVATpeALRTKSvvpGDYEATATFELTY 177
Cdd:PRK15300 108 D-DAENIGVQILDKTSTPMtfndLQAWSAAvALPTAEGVT--ELSMPFTARYIAT--AVPVKS---GTVDATATFYLQY 178
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
24-177 1.67e-03

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 37.63  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  24 VAFRGNLLDRPCHVSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENCHATaVGKIVTLTFKGTEEAALPGHLKVT 103
Cdd:PRK15194  35 IHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFTIQLNDCDPV-VAATAAVAFSGQADATNDNLLAVA 113

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446520367 104 GVN----AGRLGIALLDTDgSSLLKP-GTSHNKGQGEKVTGNSLElpFGAYVVATpealrTKSVVPGDYEATATFELTY 177
Cdd:PRK15194 114 SSTntttATGVGIEILDNT-SSILKPdGATFSANQNLIEGTNTLH--FSARYKAT-----GTSASAGQANADATFIMKY 184
lpfA PRK15289
fimbrial protein; Provisional
 17-111 2.12e-03

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 37.25  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  17 GQAIASD--VAFRGNLLDRPCHVSGDSLNKhVVFKTRASRDFWYPPGR--SPTEsFVIRLENCHATAvgKIVTLTFKGTE 92
Cdd:PRK15289  19 GHALAEDgvVHFVGEIVDTTCEVTSDTADQ-IVPLGKVSKNAFSGVGSlaSPQK-FSIKLENCPATY--TQAAVRFDGTE 94

                         90       100
                 ....*....|....*....|
gi 446520367  93 EAALPGHLKV-TGVNAGRLG 111
Cdd:PRK15289  95 APGGDGDLKVgTPLTAGNPG 114
PRK14641 PRK14641
ribosome maturation factor RimP;
80-156 4.43e-03

ribosome maturation factor RimP;


Pssm-ID: 173104 [Multi-domain]  Cd Length: 173  Bit Score: 36.29  E-value: 4.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  80 VGKIVTLTFKGTE--EAALPGHLkvtgvnagrLGIALLDTDGSSL-LKPGTSHNKGQGEKVTGNSLELpfGAYVVATPEA 156
Cdd:PRK14641 103 VGRLLRVTYRDEEgsEHEVTGHL---------QEVSLTEGEGASIvLKPEQKKKKGKQEETENITLEL--DAVIRAVPEA 171
PRK15288 PRK15288
putative minor fimbrial subunit StfG; Provisional
 21-174 6.15e-03

putative minor fimbrial subunit StfG; Provisional


Pssm-ID: 185188 [Multi-domain]  Cd Length: 176  Bit Score: 35.78  E-value: 6.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446520367  21 ASDVAFRGNLLDRPCHVSGDSLN-KHVVFKTRASRDFwYPPGRSPTESFVIRLENCHaTAVGKIVTLTFKGTEEAALPGH 99
Cdd:PRK15288  26 ADNLHFSGSLVASPCTLTMQGTGiAEVDFSSLDSSDF-TPDGQSARKPLVFELTDCD-SALSNGVQVTFTGTEATGMRGI 103

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446520367 100 LKVTGVN-AGRLGIALLDTDGSSLlkpGTSHNKGQGEKVTGNSLELPFGAYVVATPealrTKSVVPGDYEAT--ATFE 174
Cdd:PRK15288 104 LAIDSYSgASGIGIGIETLSGVPV---GMNDEEGAIFTLVTGKNTLSLNAWVQRLP----GEDLIPGRFSASalATFE 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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