|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
1-317 |
5.70e-178 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 494.86 E-value: 5.70e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 1 MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVI 80
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 81 GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLISEESIPINHPVYDTLSSLAWKIPGGG 160
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 161 RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446518662 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWEN 317
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-309 |
8.77e-85 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 258.50 E-value: 8.77e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 2 IKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIG 81
Cdd:COG1172 12 LRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 82 DFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLISE-ESIPINHPVYDTLSSLAWkipggG 160
Cdd:COG1172 92 ALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGgRPISGLPDAFRALGQGSL-----L 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 161 RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:COG1172 167 GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAG 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446518662 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:COG1172 247 SGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDR 314
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
42-308 |
3.96e-70 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 219.20 E-value: 3.96e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 42 NAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITL 121
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 122 AGMFFLRGVSYLISEESIPINHPvydTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANL 201
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP---PLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 202 MGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTY 281
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 446518662 282 INFDGtLSSWWTKIAIGILLFIFIALQ 308
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
35-278 |
3.18e-41 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 147.61 E-value: 3.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 35 ICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKI 114
Cdd:NF040906 32 VTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 115 PAFIITLAGMFFLRGVSYLISE-ESIPINHPVYDTLSS------------------------------------------ 151
Cdd:NF040906 112 PAFIVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISSgflpdlfggtglhlltlllgvlaaaalvwsqlrgrrrrikyg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 152 ----------------------LAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRST 209
Cdd:NF040906 192 levepmalfiaklvliaaailfFTYLLASYRGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRV 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446518662 210 TIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLI 278
Cdd:NF040906 272 TFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVL 340
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-303 |
2.18e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 91.55 E-value: 2.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 37 NILTDNAFLGIIAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIP 115
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 116 AFIITLAGMFFLRGVSYLISEE------SIPINHPVYDTLSSLAWKIPGGGRLsamglLMLAVVVIGIFLAHRTRFGNQV 189
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggegGTSGITGPSGFPGAFLSFAFAFIFL-----LALLLVLALWLLLYRTKFGRAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 190 YAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYA-LAGVGVELDAIASVVIGGTllsggvGTVLGT 268
Cdd:pfam02653 159 RAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGV 232
|
250 260 270
....*....|....*....|....*....|....*
gi 446518662 269 LFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:pfam02653 233 VIGSLIIGLVQSLGLGALGSPPELSLLVLGALLIL 267
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
165-303 |
1.30e-06 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 49.16 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 165 MGLLMLAVVVIGI--FLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALaGVG 242
Cdd:TIGR03409 145 LFIIVLALAVLLAlaLLLYRTRLGLRVRAVTQNRSMAAALGINTRRVDALTFALGSGIAGVAGVALTLIGNVGPTL-GQL 223
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446518662 243 VELDAIASVVIggtllsGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:TIGR03409 224 YIVDSFLVVVF------GGVGSLWGTVVAAFGLGVLNKILEYFTGASLAKVLVLVLIILFL 278
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
1-317 |
5.70e-178 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 494.86 E-value: 5.70e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 1 MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVI 80
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 81 GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLISEESIPINHPVYDTLSSLAWKIPGGG 160
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 161 RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446518662 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWEN 317
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-309 |
8.77e-85 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 258.50 E-value: 8.77e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 2 IKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIG 81
Cdd:COG1172 12 LRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 82 DFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLISE-ESIPINHPVYDTLSSLAWkipggG 160
Cdd:COG1172 92 ALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGgRPISGLPDAFRALGQGSL-----L 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 161 RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:COG1172 167 GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAG 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446518662 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:COG1172 247 SGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDR 314
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
42-308 |
3.96e-70 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 219.20 E-value: 3.96e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 42 NAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITL 121
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 122 AGMFFLRGVSYLISEESIPINHPvydTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANL 201
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP---PLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 202 MGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTY 281
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 446518662 282 INFDGtLSSWWTKIAIGILLFIFIALQ 308
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
27-279 |
2.22e-54 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 182.62 E-value: 2.22e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 27 PGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMG 106
Cdd:COG4214 44 GTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 107 LLIDALKIPAFIITLAGMFFLRGVS-YLISEESIPINHPVYDTLSSlaWKIPGGGRLSAMGL------------------ 167
Cdd:COG4214 124 FWVAYVGIPSFIVTLAGMLAFRGLTlLVLGGGTIAPFDPTFQAIGN--GFLPDILGTLSWVLgavavaayvalqlrsrrr 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 168 -------------------------------------------LMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGI 204
Cdd:COG4214 202 rrryglpveplwlfvlklallavlilgavyllnsyrgipivvlILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGI 281
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446518662 205 STRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQ 279
Cdd:COG4214 282 NVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLN 356
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
27-305 |
7.57e-50 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 168.74 E-value: 7.57e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 27 PGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGdFGLSPLLAFPLVLVMGCAFGAFMG 106
Cdd:PRK09512 37 PNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVG-IEVNALVAVPAALALGAAIGAVTG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 107 LLIDALKIPAFIITLAGMFFLRGVSYLISEESiPINHPVYDTLSSLAWKipGGGRLSAMGL---LMLAVVVIGIFLAHRT 183
Cdd:PRK09512 116 VIVAKGKVQAFIATLVMMLLLRGVTMVYTDGS-PINTGFTDNADLFGWF--GIGRPLGIPTpvwIMAIVFLAAWYMLHHT 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 184 RFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVG 263
Cdd:PRK09512 193 RLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKG 272
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 446518662 264 TVLGTLFGVAIQGLIQTYINFDGtLSSWWTKI--AIGILLFIFI 305
Cdd:PRK09512 273 RIVGTLIGALILGFLNNGLNLLG-VSSYYQMIvkAVVILLAVLV 315
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
27-309 |
2.04e-47 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 162.79 E-value: 2.04e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 27 PGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVfLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMG 106
Cdd:COG4158 48 PNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAV-VAVLVSLLPGLGLLGIPAALLVGLLFGLING 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 107 LLIDALKIPAFIITLAGMFFLRGVSYLISEESIPINhpvydtlSSLAWKIPGGGRLSA---MGLLMLAVVVIGIFLAHRT 183
Cdd:COG4158 127 LLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFN-------PDLPFAWIGNGYLLGipwLVVIALAVVLASWFILRRT 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 184 RFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFS--IYTqAGYALAGVGVELDAIASVVIGGTLLSGG 261
Cdd:COG4158 200 VLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAarLYA-ANGLQLGQGYELDAIAAVILGGTSFVGG 278
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 446518662 262 VGTVLGTLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:COG4158 279 IGSIWGTLIGALIIAVLNNGLILLG-VSDFWQFIIKGLVIIIAVALDR 325
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
35-278 |
3.18e-41 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 147.61 E-value: 3.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 35 ICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKI 114
Cdd:NF040906 32 VTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 115 PAFIITLAGMFFLRGVSYLISE-ESIPINHPVYDTLSS------------------------------------------ 151
Cdd:NF040906 112 PAFIVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISSgflpdlfggtglhlltlllgvlaaaalvwsqlrgrrrrikyg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 152 ----------------------LAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRST 209
Cdd:NF040906 192 levepmalfiaklvliaaailfFTYLLASYRGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRV 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446518662 210 TIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLI 278
Cdd:NF040906 272 TFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVL 340
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
14-283 |
7.98e-36 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 132.11 E-value: 7.98e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 14 VFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGlSPLLAFPL 93
Cdd:PRK11285 35 VFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATE-SLWLGVAA 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 94 VLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLISE-ESIPINHPVYDTLSSLAWKipgggRLSAMGLLMLAV 172
Cdd:PRK11285 114 GLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDgKAVGISDERFFALGYANFF-----GVPAPIWLTVAC 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 173 VVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVV 252
Cdd:PRK11285 189 FVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACV 268
|
250 260 270
....*....|....*....|....*....|.
gi 446518662 253 IGGTLLSGGVGTVLGTLFGVAIQGLIQTYIN 283
Cdd:PRK11285 269 LGGVSLKGGIAKISGVVAGVLILGTVENAMN 299
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
29-309 |
6.26e-31 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 118.72 E-value: 6.26e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 29 FASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIgDFGLSPLLAFPL-VLVMGCAFGAFMGL 107
Cdd:PRK09699 33 FLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLM-LAGVDPFLAALIgGVLVGGALGAINGC 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 108 LIDALKIPAFIITLAGMFFLRGVSYLISEESiPINHPVYDTLSSLAWKIPGggrLSAMGLLMLAVVVIGIFLAHRTRFGN 187
Cdd:PRK09699 112 LVNWTGLHPFIITLGTNAIFRGITLVISDAN-SVYGFSFDFVNFFAASVIG---IPVPVIFSLIVALILWFLTTRMRLGR 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 188 QVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLG 267
Cdd:PRK09699 188 NIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFS 267
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 446518662 268 TLFGVAIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:PRK09699 268 VVIGGLIIGTINNGLNILQ-VQTYYQLVVMGGLIIAAVALDR 308
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
27-319 |
2.28e-26 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 106.74 E-value: 2.28e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 27 PGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDfGLSPLLAFPLVLVMGCAFGAFMG 106
Cdd:PRK15432 29 RQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNA-GYSLPVACLATLLLGLLAGFFNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 107 LLIDALKIPAFIITLAGMFFLRGVSYLISE----ESIPinhpvyDTLSSLAWKIPGGgrLSAMGLLMLAVVVIGIFLAHR 182
Cdd:PRK15432 108 VLVAWLRIPAIVATLGTLGLYRGIMLLWTGgkwiEGLP------AELKQLSAPILLG--ISPIGWLTLILILAMAWLLAK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 183 TRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSiyTQAGYA--LAGVGVELDAIASVVIGGTLLSG 260
Cdd:PRK15432 180 TAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFA--SQIGFIpnQTGTGLEMKAIAACVLGGISLLG 257
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 446518662 261 GVGTVLGTLFGVAIQGLIQTYINFdGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQ 319
Cdd:PRK15432 258 GSGTIIGAVLGAYFLTQIDSVLVL-LRIPAWWNDFIAGLVLLGVLVFDGRLRCALERNL 315
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
25-307 |
8.96e-26 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 105.15 E-value: 8.96e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 25 QFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGD-------FGLSPLLAFPLVLVM 97
Cdd:PRK09478 32 QDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSmdnankvFPELATMPIALVILI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 98 GCAFGAFMGLL----IDALKIPAFIITLAGMFFLRGVS--YLISEESIPINHpVYDTLSSLAWKIPGGGRLSAMGLLMLA 171
Cdd:PRK09478 112 VCAIGAVIGLIngliIAYLNVTPFIATLGTMIIVYGINslYYDFVGASPISG-FDSGFSTFAQGFVALGSFRLSYITFYA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 172 VVVIGI--FLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIA 249
Cdd:PRK09478 191 LIAVAFvwVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIA 270
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446518662 250 SVVIGGTLLSGGVGTVLGTLFGVaiqgLIQTYINFDGT---LSSWWTKIAIGILLFIFIAL 307
Cdd:PRK09478 271 ACVVGGVSFSGGVGTVIGVVTGV----IIFTVINYGLTyigVNPYWQYIIKGAIIIFAVAL 327
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-303 |
2.18e-21 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 91.55 E-value: 2.18e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 37 NILTDNAFLGIIAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIP 115
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 116 AFIITLAGMFFLRGVSYLISEE------SIPINHPVYDTLSSLAWKIPGGGRLsamglLMLAVVVIGIFLAHRTRFGNQV 189
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggegGTSGITGPSGFPGAFLSFAFAFIFL-----LALLLVLALWLLLYRTKFGRAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 190 YAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYA-LAGVGVELDAIASVVIGGTllsggvGTVLGT 268
Cdd:pfam02653 159 RAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGV 232
|
250 260 270
....*....|....*....|....*....|....*
gi 446518662 269 LFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:pfam02653 233 VIGSLIIGLVQSLGLGALGSPPELSLLVLGALLIL 267
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
45-321 |
8.18e-16 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 76.79 E-value: 8.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 45 LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAkVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGM 124
Cdd:PRK15038 45 IGIVALPLTMVIVSGGIDISFGSTIGLCAIALG-VLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 125 FFLRGVSYLISEESIPINhpvYDTLSSLAWKIPGGGRLSAMGL-----LMLAVVVIGIFLAHRTRFGNQVYAIGGNATSA 199
Cdd:PRK15038 124 YLFGGSALLLSGMAGATG---YEGIGGFPMAFTDFANLDVLGLpvpliIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 200 NLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQ 279
Cdd:PRK15038 201 LYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQ 280
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 446518662 280 TYINFDGTLSSWWTKIAIGILLFIF----IALQRGLTVLWENRQSS 321
Cdd:PRK15038 281 QGLQMAGVPNQISSALSGALLIVVVvgrsVSLHRHQIKEWLARRRN 326
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
43-307 |
8.86e-16 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 76.25 E-value: 8.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 43 AFLGIIAVGMTFV-ILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLI-----DALKIPA 116
Cdd:COG0559 16 SIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLERLVirplrGAPPLAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 117 FIITLAGMFFLRGVSYLI-SEESIPINHPVYDTLSSLAWKIPGGgRLSAMGLLMLAVVVIGIFLaHRTRFGNQVYAIGGN 195
Cdd:COG0559 96 LLATIGLSLVLQGLVLLIfGADPRSFPALLSGSVELGGVSIPAY-RLFIIVVALVLLAALWLFL-RRTRLGLAMRAVAQN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 196 ATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFGVAIQ 275
Cdd:COG0559 174 REAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTM-GFLLGLKAFAAVVL------GGLGSIPGAVVGGLLL 246
|
250 260 270
....*....|....*....|....*....|..
gi 446518662 276 GLIQTYINFdgTLSSWWTKIAIGILLFIFIAL 307
Cdd:COG0559 247 GLAESLGAA--YLPSGYKDVVAFVLLILVLLV 276
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
45-278 |
2.93e-15 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 74.62 E-value: 2.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 45 LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGM 124
Cdd:cd06574 4 YAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIM 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 125 FFLRGVSYLISEESipiNHPVYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA----HRTRFGNQVYAIGGNATSAN 200
Cdd:cd06574 84 IGLYSINLRIMGGP---NIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLviwfLRTKLGLAMRATGDNPDMAR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446518662 201 LMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLsgGVGTVLGTLFGVAIQGLI 278
Cdd:cd06574 161 SLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIV--GRRTIKASILGVIIGAIL 236
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
43-307 |
3.22e-14 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 71.69 E-value: 3.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 43 AFLGIIAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLI-----DALKIPA 116
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVlrplrGAPLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 117 FIITLAGMFFLRGVSYLISEESIPINHPVYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAhRTRFGNQVYAIGGNA 196
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLR-RTRLGRAIRAVAQNP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 197 TSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFGVAIQG 276
Cdd:cd06582 165 EAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTM-GLLLLLKAFAAVVL------GGLGSIPGAVVGGLLLG 237
|
250 260 270
....*....|....*....|....*....|.
gi 446518662 277 LIQTYINfdGTLSSWWTKIAIGILLFIFIAL 307
Cdd:cd06582 238 LAESLAA--AYLSSGYKDAVAFVLLILVLLV 266
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
43-311 |
5.98e-12 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 64.77 E-value: 5.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 43 AFLGIIAVGMTFVILSGGIdLSVGSViAFTGV---FLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAF-I 118
Cdd:cd06581 2 LIYAILALGLNLLLGYAGQ-LSLGHA-AFFGIgayTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 119 ITLAGMFFLRGVsyLISEESI---PINHPVYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGN 195
Cdd:cd06581 80 ATLAFAEIVRLL--ALNWSSLtggSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIREN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 196 ATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQ-AGYALAGVGVELDAIASVVIggtllsGGVGTVLGTLFGVAI 274
Cdd:cd06581 158 EVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGfVSPESFGFALSIELLLMVVL------GGLGSLLGPVLGAAL 231
|
250 260 270
....*....|....*....|....*....|....*...
gi 446518662 275 QGLIQTYINFdgtLSSWWTKIAIGILLFIF-IALQRGL 311
Cdd:cd06581 232 LVLLPELLRS---LGPGLRLLVFGLLLILVvLFLPRGL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
37-318 |
1.49e-10 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 60.87 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 37 NILTDNAFLGIIAVGMTFVILSGGIdLSVGSViAFTGV---FLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALK 113
Cdd:COG4177 6 SLLTLILIYAILALGLNLLLGYTGL-LSLGHA-AFFGIgayAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 114 IPAF-IITLAGMFFLRGVsyLISEESI---PINHPVYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQV 189
Cdd:COG4177 84 GDYLaIATLAFAEIVRLL--ALNLESLtggADGLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVRSRFGRAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 190 YAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQ-AGYALAGVGVELDAIASVVIggtllsGGVGTVLGT 268
Cdd:COG4177 162 RAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGfVSPESFSFLLSIEILLMVVL------GGLGSLLGP 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 446518662 269 LFGVAIQGLIQTYINFdgtLSSWWTKIAIGILLFIFIALQRGLTVLWENR 318
Cdd:COG4177 236 VLGAVLLVLLPELLRS---LPEYRLLIFGLLLILVVLFRPRGLAGLLRRL 282
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
42-274 |
8.34e-10 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 58.98 E-value: 8.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 42 NAFLGIIAVGMTFVILSGGI----------DLSV-GSVIafTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLID 110
Cdd:COG4120 4 NLLIGALEQGLIYAIMALGVyitfrildfpDLTVdGSFP--LGAAVAAVLIVAGVNPFLATLAAFLAGALAGLVTGLLHT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 111 ALKIPAFiitLAG---MFFLRGVSYLISEES-IPINHpvYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAH--RTR 184
Cdd:COG4120 82 KLKIPPL---LAGiltMTALYSINLRIMGKPnIPLLG--EDTIFTLLPDLGLPGDWAKLLVLLVIVLVIKLLLDWflKTE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 185 FGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTqaGYALA--GVGVELDAIASVVIGGTLLsgGV 262
Cdd:COG4120 157 LGLALRATGDNPQMARALGINTDRMKILGLALSNGLVALSGALVAQYQ--GFADVnmGIGTIVIGLASVIIGEVLF--GS 232
|
250
....*....|..
gi 446518662 263 GTVLGTLFGVAI 274
Cdd:COG4120 233 RSILRRLLAVVL 244
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
84-227 |
1.45e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 52.43 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 84 GLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPA------------FIITLAGMFFLRGVsyLISEESipiNHPVYDTLSS 151
Cdd:COG4603 109 GLPGPLHLPLALLAGALAGALWAAIPGLLKARFgvnevittlmlnYIALYLVNYLVRGP--LRDPGS---GFPQTPPIPE 183
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446518662 152 LAW--KIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIV 227
Cdd:COG4603 184 SARlpRLLPGTRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAV 261
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
165-303 |
1.30e-06 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 49.16 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 165 MGLLMLAVVVIGI--FLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALaGVG 242
Cdd:TIGR03409 145 LFIIVLALAVLLAlaLLLYRTRLGLRVRAVTQNRSMAAALGINTRRVDALTFALGSGIAGVAGVALTLIGNVGPTL-GQL 223
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446518662 243 VELDAIASVVIggtllsGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:TIGR03409 224 YIVDSFLVVVF------GGVGSLWGTVVAAFGLGVLNKILEYFTGASLAKVLVLVLIILFL 278
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
70-255 |
6.58e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 43.58 E-value: 6.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 70 AFTGVFLAKVIGD-FGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFF-LRGVSYLIseesipinhpvyd 147
Cdd:cd06580 32 AFAAALVALYLGLpATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIaLGLTSYLL------------- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 148 tlsslawkipgggrlsamgLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIV 227
Cdd:cd06580 99 -------------------LLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAY 159
|
170 180 190
....*....|....*....|....*....|.
gi 446518662 228 FSIYTQAGYAL---AGVGveLDAIASVVIGG 255
Cdd:cd06580 160 LVLGVQGRFTEgmsAGYG--FIAIAVALLGR 188
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
70-236 |
6.86e-04 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 40.82 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 70 AFTGVFLAKVIGdfglSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLISEESIPINHPVYDTL 149
Cdd:COG1079 49 AFAGFAVAYLTG----SPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLALNLLALGLTAFLGRLLFGQGGQTPSIP 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446518662 150 SSLAWKIPG-------GG---RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTG 219
Cdd:COG1079 125 GLPPIPIPGlsdipvlGPllfGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGA 204
|
170
....*....|....*..
gi 446518662 220 LATLAGIVFSIYTQAGY 236
Cdd:COG1079 205 LAGLGGAYLSLGYVGSF 221
|
|
| |
