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Conserved domains on  [gi|446517954|ref|WP_000595300|]
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MULTISPECIES: CDP-glycerol glycerophosphotransferase family protein [Staphylococcus]

Protein Classification

CDP-glycerol glycerophosphotransferase family protein( domain architecture ID 10004838)

CDP-glycerol glycerophosphotransferase family protein similar to Bacillus spizizenii teichoic acid ribitol-phosphate primase, teichoic acid glycerol-phosphate primase and teichoic acid poly(ribitol-phosphate) polymerase

EC:  2.7.8.-
Gene Ontology:  GO:0047355|GO:0071555|GO:0019350

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyphos_transf super family cl42225
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
217-503 2.32e-36

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


The actual alignment was detected with superfamily member COG1887:

Pssm-ID: 478041  Cd Length: 369  Bit Score: 138.97  E-value: 2.32e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 217 FGLYTKQPNVLKDHIVFIGDHH-QYIGNSKYLFTYFVKHNPMTACYFVTDD------RRGPHFISPKSEKADELINSARV 289
Cdd:COG1887   10 YYRLSRLLPVKKNIILFESRNGrSYSDNPKALFEYLRKNHPDYEVVWVVDDdskrlpKEGVKVVKRGSLKYLYALARAKY 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 290 VLVENDIPE----TLQPNGTLIQLHQGTPIMQLFLDSKEPiknietpfYRAKRYNRWLQFDYVIHSADDISHFYQTAFPS 365
Cdd:COG1887   90 LVSNHYFPFpsyfRKRKGQKYVQLWHGTPLKKIGLDDPPR--------YLKRVLREYRNWDYLLSSSEESTEIFRRAFGY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 366 HQANVLAYGNPKHQYLLQKrNESTTQQQYKKSFKINDQKPVLLYAP----IGLVSAQQLPLSDALFKAY----------- 430
Cdd:COG1887  162 PEGEVLETGYPRNDVLFDA-DREELREELRERLGIPEDKKVILYAPtwrdDEDNFDDYLDLDLERLAELlgddyvllvrl 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446517954 431 HVVVQGVDEAMLPEEALVAPKYLSAQDLILMSDVVITDYSNIIFDAMAIDKTVALYTPNHSQYIESQGVNEDI 503
Cdd:COG1887  241 HPFVKDSLDEKYSDRIIDVSDYPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGFYFDY 313
 
Name Accession Description Interval E-value
TagB COG1887
CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope ...
217-503 2.32e-36

CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 441491  Cd Length: 369  Bit Score: 138.97  E-value: 2.32e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 217 FGLYTKQPNVLKDHIVFIGDHH-QYIGNSKYLFTYFVKHNPMTACYFVTDD------RRGPHFISPKSEKADELINSARV 289
Cdd:COG1887   10 YYRLSRLLPVKKNIILFESRNGrSYSDNPKALFEYLRKNHPDYEVVWVVDDdskrlpKEGVKVVKRGSLKYLYALARAKY 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 290 VLVENDIPE----TLQPNGTLIQLHQGTPIMQLFLDSKEPiknietpfYRAKRYNRWLQFDYVIHSADDISHFYQTAFPS 365
Cdd:COG1887   90 LVSNHYFPFpsyfRKRKGQKYVQLWHGTPLKKIGLDDPPR--------YLKRVLREYRNWDYLLSSSEESTEIFRRAFGY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 366 HQANVLAYGNPKHQYLLQKrNESTTQQQYKKSFKINDQKPVLLYAP----IGLVSAQQLPLSDALFKAY----------- 430
Cdd:COG1887  162 PEGEVLETGYPRNDVLFDA-DREELREELRERLGIPEDKKVILYAPtwrdDEDNFDDYLDLDLERLAELlgddyvllvrl 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446517954 431 HVVVQGVDEAMLPEEALVAPKYLSAQDLILMSDVVITDYSNIIFDAMAIDKTVALYTPNHSQYIESQGVNEDI 503
Cdd:COG1887  241 HPFVKDSLDEKYSDRIIDVSDYPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGFYFDY 313
Glyphos_transf pfam04464
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
228-503 2.60e-21

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


Pssm-ID: 398259  Cd Length: 360  Bit Score: 95.49  E-value: 2.60e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954  228 KDHIVFIGDHH-QYIGNSKYLFTYFVKHNPMTACYFV-------TDDRRGPHfISPKSEKADELINSARVVLVENDIPET 299
Cdd:pfam04464   4 PNLVLFESFWGrGYSDNPKAIYEYLRELAPGYRIVWVvkkdhsaRLPKGVPV-VVRNSFRYLYLLLRAKYLVSNSNFPLY 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954  300 L--QPNGTLIQLHQGTPIMQLFLDSKE-PIKNIETPFYRakRYNRWlqfDYVIHSADDISHFYQTAFPSHQANVLAYGNP 376
Cdd:pfam04464  83 VvkRKNQVYLQTWHGTPLKHMGLDILEvPMANTGQNFLR--NVDRW---DYLISANPHSTNIFARAFNIDKERILETGYP 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954  377 KHQYLLQKRNEstTQQQYKKSFKINDQKPVLLYAP-------IGLVSAQQLPLSDA-------------LFKAYHVVVQG 436
Cdd:pfam04464 158 RNDVLFNANNE--DVQRIRERLGIPLGKKVILYAPtwrdderGSIGSYRFELLIDLerlafalgndyviLLKMHPLIQNN 235
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446517954  437 VDEAMLPEEALVAPKYLSAQDLILMSDVVITDYSNIIFDAMAIDKTVALYTPNHSQYIESQGVNEDI 503
Cdd:pfam04464 236 IDIFESSGYVVDVSDYEDVEDLLLASDILITDYSSVMFDYAVLDRPIIFYAYDLETYSATRGFYLDY 302
 
Name Accession Description Interval E-value
TagB COG1887
CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope ...
217-503 2.32e-36

CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 441491  Cd Length: 369  Bit Score: 138.97  E-value: 2.32e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 217 FGLYTKQPNVLKDHIVFIGDHH-QYIGNSKYLFTYFVKHNPMTACYFVTDD------RRGPHFISPKSEKADELINSARV 289
Cdd:COG1887   10 YYRLSRLLPVKKNIILFESRNGrSYSDNPKALFEYLRKNHPDYEVVWVVDDdskrlpKEGVKVVKRGSLKYLYALARAKY 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 290 VLVENDIPE----TLQPNGTLIQLHQGTPIMQLFLDSKEPiknietpfYRAKRYNRWLQFDYVIHSADDISHFYQTAFPS 365
Cdd:COG1887   90 LVSNHYFPFpsyfRKRKGQKYVQLWHGTPLKKIGLDDPPR--------YLKRVLREYRNWDYLLSSSEESTEIFRRAFGY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954 366 HQANVLAYGNPKHQYLLQKrNESTTQQQYKKSFKINDQKPVLLYAP----IGLVSAQQLPLSDALFKAY----------- 430
Cdd:COG1887  162 PEGEVLETGYPRNDVLFDA-DREELREELRERLGIPEDKKVILYAPtwrdDEDNFDDYLDLDLERLAELlgddyvllvrl 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446517954 431 HVVVQGVDEAMLPEEALVAPKYLSAQDLILMSDVVITDYSNIIFDAMAIDKTVALYTPNHSQYIESQGVNEDI 503
Cdd:COG1887  241 HPFVKDSLDEKYSDRIIDVSDYPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGFYFDY 313
Glyphos_transf pfam04464
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
228-503 2.60e-21

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


Pssm-ID: 398259  Cd Length: 360  Bit Score: 95.49  E-value: 2.60e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954  228 KDHIVFIGDHH-QYIGNSKYLFTYFVKHNPMTACYFV-------TDDRRGPHfISPKSEKADELINSARVVLVENDIPET 299
Cdd:pfam04464   4 PNLVLFESFWGrGYSDNPKAIYEYLRELAPGYRIVWVvkkdhsaRLPKGVPV-VVRNSFRYLYLLLRAKYLVSNSNFPLY 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954  300 L--QPNGTLIQLHQGTPIMQLFLDSKE-PIKNIETPFYRakRYNRWlqfDYVIHSADDISHFYQTAFPSHQANVLAYGNP 376
Cdd:pfam04464  83 VvkRKNQVYLQTWHGTPLKHMGLDILEvPMANTGQNFLR--NVDRW---DYLISANPHSTNIFARAFNIDKERILETGYP 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517954  377 KHQYLLQKRNEstTQQQYKKSFKINDQKPVLLYAP-------IGLVSAQQLPLSDA-------------LFKAYHVVVQG 436
Cdd:pfam04464 158 RNDVLFNANNE--DVQRIRERLGIPLGKKVILYAPtwrdderGSIGSYRFELLIDLerlafalgndyviLLKMHPLIQNN 235
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446517954  437 VDEAMLPEEALVAPKYLSAQDLILMSDVVITDYSNIIFDAMAIDKTVALYTPNHSQYIESQGVNEDI 503
Cdd:pfam04464 236 IDIFESSGYVVDVSDYEDVEDLLLASDILITDYSSVMFDYAVLDRPIIFYAYDLETYSATRGFYLDY 302
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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