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Conserved domains on  [gi|446514202|ref|WP_000591548|]
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MULTISPECIES: DUF1564 family protein [Leptospira]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1564 super family cl06583
Protein of unknown function (DUF1564); A family of paralogous proteins in Leptospira ...
 29-136 2.04e-12

Protein of unknown function (DUF1564); A family of paralogous proteins in Leptospira interrogans. Several have been annotated as possible CopG-like transcriptional regulators (see pfam01402).


The actual alignment was detected with superfamily member pfam07600:

Pssm-ID: 284922  Cd Length: 167  Bit Score: 62.03  E-value: 2.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446514202   29 KSISKRKRDSPSDLWIPRVKIPHLTrrISQFKSLKCTLHFLLKKNRSRLHSL-FAQPEKEKTLYQETELELVRFSFRPNA 107
Cdd:pfam07600  13 KSKLIEKSSGTDSLLIPEDYWNRLS--EKEKKNLRKKLPFLLKKYQKYLSSSkRLGKKAGKTLYQRSNGKMKRMNFRVNT 90

                          90       100
                  ....*....|....*....|....*....
gi 446514202  108 ADWAELRLVARYYGVSICNFFVMLLTFDE 136
Cdd:pfam07600  91 GDWALLGVLAAAHGVSRCYLFNYLLWLED 119
 
Name Accession Description Interval E-value
DUF1564 pfam07600
Protein of unknown function (DUF1564); A family of paralogous proteins in Leptospira ...
 29-136 2.04e-12

Protein of unknown function (DUF1564); A family of paralogous proteins in Leptospira interrogans. Several have been annotated as possible CopG-like transcriptional regulators (see pfam01402).


Pssm-ID: 284922  Cd Length: 167  Bit Score: 62.03  E-value: 2.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446514202   29 KSISKRKRDSPSDLWIPRVKIPHLTrrISQFKSLKCTLHFLLKKNRSRLHSL-FAQPEKEKTLYQETELELVRFSFRPNA 107
Cdd:pfam07600  13 KSKLIEKSSGTDSLLIPEDYWNRLS--EKEKKNLRKKLPFLLKKYQKYLSSSkRLGKKAGKTLYQRSNGKMKRMNFRVNT 90

                          90       100
                  ....*....|....*....|....*....
gi 446514202  108 ADWAELRLVARYYGVSICNFFVMLLTFDE 136
Cdd:pfam07600  91 GDWALLGVLAAAHGVSRCYLFNYLLWLED 119
 
Name Accession Description Interval E-value
DUF1564 pfam07600
Protein of unknown function (DUF1564); A family of paralogous proteins in Leptospira ...
 29-136 2.04e-12

Protein of unknown function (DUF1564); A family of paralogous proteins in Leptospira interrogans. Several have been annotated as possible CopG-like transcriptional regulators (see pfam01402).


Pssm-ID: 284922  Cd Length: 167  Bit Score: 62.03  E-value: 2.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446514202   29 KSISKRKRDSPSDLWIPRVKIPHLTrrISQFKSLKCTLHFLLKKNRSRLHSL-FAQPEKEKTLYQETELELVRFSFRPNA 107
Cdd:pfam07600  13 KSKLIEKSSGTDSLLIPEDYWNRLS--EKEKKNLRKKLPFLLKKYQKYLSSSkRLGKKAGKTLYQRSNGKMKRMNFRVNT 90

                          90       100
                  ....*....|....*....|....*....
gi 446514202  108 ADWAELRLVARYYGVSICNFFVMLLTFDE 136
Cdd:pfam07600  91 GDWALLGVLAAAHGVSRCYLFNYLLWLED 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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