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Conserved domains on  [gi|446513711|ref|WP_000591057|]
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MULTISPECIES: fimbrial protein [Gammaproteobacteria]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
10-189 8.06e-32

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15241:

Pssm-ID: 445401  Cd Length: 188  Bit Score: 113.33  E-value: 8.06e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  10 AILMGILLSPSVFATDINVEFTATVKATTCNIT---LTGNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGC 86
Cdd:PRK15241  10 ASVLAMIFPLTSQAEDINVDFTATVLATTCSMSiaaLDGSNVSGDATSGYTLNVGDVGLDKIIKKSAESQKNFKFVAKDC 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  87 SSGISWIDTTLtGNASSSSPKLIIPQSGdSSSTTSNIGMGFKKRTTDDATFLKPNSAEkIRWSTDEMQPDKgLEMTVALR 166
Cdd:PRK15241  90 SAALTKITTAL-GSSADASGNFIKNQSA-ASDAASNIGMGFKRKSTTDETYFTPGSGS-ITWTDDERTANE-VEMTVALR 165

                        170       180
                 ....*....|....*....|...
gi 446513711 167 ETDAGQGVPGNFRALATFNFIYQ 189
Cdd:PRK15241 166 ELTDGAGTMGAFSSTATFNFTYQ 188
 
Name Accession Description Interval E-value
PRK15241 PRK15241
putative fimbrial protein StaD; Provisional
 10-189 8.06e-32

putative fimbrial protein StaD; Provisional


Pssm-ID: 185154  Cd Length: 188  Bit Score: 113.33  E-value: 8.06e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  10 AILMGILLSPSVFATDINVEFTATVKATTCNIT---LTGNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGC 86
Cdd:PRK15241  10 ASVLAMIFPLTSQAEDINVDFTATVLATTCSMSiaaLDGSNVSGDATSGYTLNVGDVGLDKIIKKSAESQKNFKFVAKDC 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  87 SSGISWIDTTLtGNASSSSPKLIIPQSGdSSSTTSNIGMGFKKRTTDDATFLKPNSAEkIRWSTDEMQPDKgLEMTVALR 166
Cdd:PRK15241  90 SAALTKITTAL-GSSADASGNFIKNQSA-ASDAASNIGMGFKRKSTTDETYFTPGSGS-ITWTDDERTANE-VEMTVALR 165

                        170       180
                 ....*....|....*....|...
gi 446513711 167 ETDAGQGVPGNFRALATFNFIYQ 189
Cdd:PRK15241 166 ELTDGAGTMGAFSSTATFNFTYQ 188
Fimbrial pfam00419
Fimbrial protein;
26-189 1.92e-20

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 82.87  E-value: 1.92e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711   26 INVEFTATVKATTCNITLTGNNvtndgnnnyTLRIPKMGLDKIAN-KTTESQADFKLVASgCSSGISWIDTTLT--GNAS 102
Cdd:pfam00419   1 INFTGTVTRVPATCKITAGTPI---------EVDFGQIPVNELNAgGEGSRQKPFSITLE-CSSGSSAVKVTVGlfGTAD 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  103 SSSPKLIIPQSGDSSSTtsniGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPdKGLEMTVALRETDAGQGVPGNFRALA 182
Cdd:pfam00419  71 ASSPNLLLTGNGAGAAT----GVGIRLYDANGGALPPNNGTSSIPVSATAAVA-TGITFTASLVATTGGTPTAGDFNATA 145


                  ....*..
gi 446513711  183 TFNFIYQ 189
Cdd:pfam00419 146 TIVVDYQ 152
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
12-189 6.42e-11

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 58.13  E-value: 6.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  12 LMGILLSPSVFATDINVEFTATVKATTCNITLTGNNVtndgnnnyTLRIPKMGLDKIANK-TTESQADFKLVASGCSSGI 90
Cdd:COG3539   10 LALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQ--------TVDLGTVSTSDLNGVgSTSGPKPFSIKLTNCDAGT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  91 SW-IDTTLTGNASSSSPKLIipqSGDSSSTTSNIGMGFKKRTTDDATFLKPNSAEKIRWSTDEMqpdkgLEMTVALRETd 169
Cdd:COG3539   82 SNsVKVTFTGTADSANPGLL---ANTGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSAT-----LPFYARYVAT- 152

                        170       180
                 ....*....|....*....|
gi 446513711 170 AGQGVPGNFRALATFNFIYQ 189
Cdd:COG3539  153 GATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
PRK15241 PRK15241
putative fimbrial protein StaD; Provisional
 10-189 8.06e-32

putative fimbrial protein StaD; Provisional


Pssm-ID: 185154  Cd Length: 188  Bit Score: 113.33  E-value: 8.06e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  10 AILMGILLSPSVFATDINVEFTATVKATTCNIT---LTGNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGC 86
Cdd:PRK15241  10 ASVLAMIFPLTSQAEDINVDFTATVLATTCSMSiaaLDGSNVSGDATSGYTLNVGDVGLDKIIKKSAESQKNFKFVAKDC 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  87 SSGISWIDTTLtGNASSSSPKLIIPQSGdSSSTTSNIGMGFKKRTTDDATFLKPNSAEkIRWSTDEMQPDKgLEMTVALR 166
Cdd:PRK15241  90 SAALTKITTAL-GSSADASGNFIKNQSA-ASDAASNIGMGFKRKSTTDETYFTPGSGS-ITWTDDERTANE-VEMTVALR 165

                        170       180
                 ....*....|....*....|...
gi 446513711 167 ETDAGQGVPGNFRALATFNFIYQ 189
Cdd:PRK15241 166 ELTDGAGTMGAFSSTATFNFTYQ 188
Fimbrial pfam00419
Fimbrial protein;
26-189 1.92e-20

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 82.87  E-value: 1.92e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711   26 INVEFTATVKATTCNITLTGNNvtndgnnnyTLRIPKMGLDKIAN-KTTESQADFKLVASgCSSGISWIDTTLT--GNAS 102
Cdd:pfam00419   1 INFTGTVTRVPATCKITAGTPI---------EVDFGQIPVNELNAgGEGSRQKPFSITLE-CSSGSSAVKVTVGlfGTAD 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  103 SSSPKLIIPQSGDSSSTtsniGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPdKGLEMTVALRETDAGQGVPGNFRALA 182
Cdd:pfam00419  71 ASSPNLLLTGNGAGAAT----GVGIRLYDANGGALPPNNGTSSIPVSATAAVA-TGITFTASLVATTGGTPTAGDFNATA 145


                  ....*..
gi 446513711  183 TFNFIYQ 189
Cdd:pfam00419 146 TIVVDYQ 152
PRK15306 PRK15306
fimbrial protein;
23-189 3.45e-17

fimbrial protein;


Pssm-ID: 237938  Cd Length: 190  Bit Score: 75.47  E-value: 3.45e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  23 ATDINVEFTATVKATTCNITLTGNNVTNDGNNNYTLRIP-KMGLDKIANKTteSQADFKLVASGCSSGISWIDTTLTGNA 101
Cdd:PRK15306  27 STNLDVNFTATILETTCDMKLVGGTGSDTVQELIIGNSSgEVRIDDVRAGT--ATADFKLVIVECPASLQSLKTSINGTP 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711 102 SSSSPKlIIPQSGDSSSttSNIGMGFKKRTTDDATFLKPNSA--EKIRWSTDEMQPdKGLEMTVALRETDAGQGVPGNFR 179
Cdd:PRK15306 105 SGYSTK-ILTNGTKGSA--DYIGVSVARASKPDEPFVINSTAdsERLVWSEVEINS-KEVPLIAIMKETKANSATTGAFS 180

                        170
                 ....*....|
gi 446513711 180 ALATFNFIYQ 189
Cdd:PRK15306 181 AVATFVFSYE 190
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
12-189 6.42e-11

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 58.13  E-value: 6.42e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  12 LMGILLSPSVFATDINVEFTATVKATTCNITLTGNNVtndgnnnyTLRIPKMGLDKIANK-TTESQADFKLVASGCSSGI 90
Cdd:COG3539   10 LALALSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQ--------TVDLGTVSTSDLNGVgSTSGPKPFSIKLTNCDAGT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446513711  91 SW-IDTTLTGNASSSSPKLIipqSGDSSSTTSNIGMGFKKRTTDDATFLKPNSAEKIRWSTDEMqpdkgLEMTVALRETd 169
Cdd:COG3539   82 SNsVKVTFTGTADSANPGLL---ANTGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSAT-----LPFYARYVAT- 152

                        170       180
                 ....*....|....*....|
gi 446513711 170 AGQGVPGNFRALATFNFIYQ 189
Cdd:COG3539  153 GATVTAGSFNATATFTIDYQ 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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