|
Name |
Accession |
Description |
Interval |
E-value |
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
1-252 |
1.58e-170 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 470.33 E-value: 1.58e-170
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:COG4604 1 MIEIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAKRLAIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:COG4604 81 RQENHINSRLTVRELVAFGRFPYSKGRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 161 EPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYELDFEIT 240
Cdd:COG4604 161 EPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGTPEEIITPEVLSDIYDTDIEVE 240
|
250
....*....|..
gi 446504261 241 YSERGCMCNYFN 252
Cdd:COG4604 241 EIDGKRICVYFR 252
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1-245 |
7.80e-112 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 321.99 E-value: 7.80e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:COG1120 1 MLEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFPYSR--GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:COG1120 81 PQEPPAPFGLTVRELVALGRYPHLGlfGRPSAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEPPLLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYELDFE 238
Cdd:COG1120 161 LDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPEEVLTPELLEEVYGVEAR 240
|
....*..
gi 446504261 239 ITYSERG 245
Cdd:COG1120 241 VIEDPVT 247
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1-239 |
8.37e-83 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 248.39 E-value: 8.37e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFPYSR--GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSlwGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYELDFE 238
Cdd:PRK11231 162 LDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFDVEAE 240
|
.
gi 446504261 239 I 239
Cdd:PRK11231 241 I 241
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
4-218 |
1.83e-74 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 224.24 E-value: 1.83e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQA 83
Cdd:cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 pgfnlrltveelvsfgrfpysrgvlteqdhqvvdeaIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:cd03214 82 ------------------------------------LELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 164 NNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1-240 |
5.30e-73 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 223.49 E-value: 5.30e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFPYSRGvlTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQ------QT 154
Cdd:PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLS--RAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQlwepdgPP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYE 234
Cdd:PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETLRRVYG 239
|
....*.
gi 446504261 235 LDFEIT 240
Cdd:PRK13548 240 ADVLVQ 245
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-239 |
9.81e-73 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 222.27 E-value: 9.81e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyaKHVATL 80
Cdd:COG1121 6 AIELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRAR-----RRIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLR--LTVEELVSFGRFPYSR--GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:COG1121 81 PQRAEVDWDfpITVRDVVLMGRYGRRGlfRRPSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQDPDL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 157 LLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALkNGKLHFSGLTEQVITEAQLNDLYELD 236
Cdd:COG1121 161 LLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGPPEEVLTPENLSRAYGGP 238
|
...
gi 446504261 237 FEI 239
Cdd:COG1121 239 VAL 241
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-236 |
1.69e-69 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 214.59 E-value: 1.69e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:COG4559 1 MLEAENLSVRLGGRTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGELTPSSGEVRLNGRPLAAWSPWELARRRAVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFPYSRGvlTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQ-------Q 153
Cdd:COG4559 81 PQHSSLAFPFTVEEVVALGRAPHGSS--AAQDRQIVREALALVGLAHLAGRSYQTLSGGEQQRVQLARVLAQlwepvdgG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGrTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLY 233
Cdd:COG4559 159 PRWLFLDEPTSALDLAHQHAVLRLARQLARRGG-GVVAVLHDLNLAAQYADRILLLHQGRLVAQGTPEEVLTDELLERVY 237
|
...
gi 446504261 234 ELD 236
Cdd:COG4559 238 GAD 240
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
3-218 |
4.03e-67 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 207.00 E-value: 4.03e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 3 HVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyaKHVATLRQ 82
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKER-----KRIGYVPQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 APGFN--LRLTVEELVSFGRFPYSR--GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:cd03235 76 RRSIDrdFPISVRDVVLMGLYGHKGlfRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALkNGKLHFSG 218
Cdd:cd03235 156 LDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
1-233 |
6.72e-64 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 199.90 E-value: 6.72e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH--- 76
Cdd:COG3638 2 MLELRNLSKRYpGGTPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRRLrrr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQapGFNL--RLTVEELVSFGRFPYS------RGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAM 148
Cdd:COG3638 82 IGMIFQ--QFNLvpRLSVLTNVLAGRLGRTstwrslLGLFPPEDRERALEALERVGLADKAYQRADQLSGGQQQRVAIAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQViTEAQ 228
Cdd:COG3638 160 ALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVVFDGPPAEL-TDAV 238
|
....*
gi 446504261 229 LNDLY 233
Cdd:COG3638 239 LREIY 243
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1-245 |
1.35e-62 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 196.23 E-value: 1.35e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVyAKHVATL 80
Cdd:COG4555 1 MIEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREA-RRQIGVL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEE-LVSFGRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:COG4555 80 PDERGLYDRLTVREnIRYFAEL---YGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYELDFEI 239
Cdd:COG4555 157 DEPTNGLDVMARRLLREILRALKKE-GKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGEENLEDAFVAL 235
|
....*.
gi 446504261 240 TYSERG 245
Cdd:COG4555 236 IGSEEG 241
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
4-233 |
4.22e-62 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 195.78 E-value: 4.22e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQ- 82
Cdd:PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQq 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 ---APGfnlrLTVEELVSFGRFPY--SRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:PRK10575 94 lpaAEG----MTVRELVAIGRYPWhgALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLY 233
Cdd:PRK10575 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
2-233 |
4.64e-60 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 189.70 E-value: 4.64e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAV---YAKHV 77
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAlrqLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQapGFNL--RLTVEELVSFGRFPYS------RGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMT 149
Cdd:cd03256 81 GMIFQ--QFNLieRLSVLENVLSGRLGRRstwrslFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQvITEAQL 229
Cdd:cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE-LTDEVL 237
|
....
gi 446504261 230 NDLY 233
Cdd:cd03256 238 DEIY 241
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
2-233 |
5.13e-59 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 186.81 E-value: 5.13e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYaKHVATLR 81
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVR-RRIGYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSF-GRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:COG1131 80 QEPALYPDLTVRENLRFfARL---YGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 161 EPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQvITEAQLNDLY 233
Cdd:COG1131 157 EPTSGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDE-LKARLLEDVF 227
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
2-214 |
1.31e-58 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 185.03 E-value: 1.31e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADikTAVYAKHVATLR 81
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG--VPPERRNIGMVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QapGFNL--RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03259 79 Q--DYALfpHLTVAENIAFG--LKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03259 155 DEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
2-229 |
7.52e-58 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 183.69 E-value: 7.52e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPG---FNlrLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:COG1122 81 FQNPDdqlFA--PTVEEDVAFG--PENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQL 229
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREVFSDYEL 227
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
1-233 |
1.10e-57 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 183.65 E-value: 1.10e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyAKHVAT 79
Cdd:TIGR02315 1 MLEVENLSKVYPNgKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR----GKKLRK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPG-----FNL--RLTVEELVSFGRFPYSR------GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFL 146
Cdd:TIGR02315 77 LRRRIGmifqhYNLieRLTVLENVLHGRLGYKPtwrsllGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQvITE 226
Cdd:TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE-LDD 235
|
....*..
gi 446504261 227 AQLNDLY 233
Cdd:TIGR02315 236 EVLRHIY 242
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
4-213 |
7.38e-56 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 178.04 E-value: 7.38e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLR 81
Cdd:cd03225 2 LKNLSFSYPDgaRPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAP--GFnLRLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03225 82 QNPddQF-FGPTVEEEVAFG--LENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLK-AEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-233 |
3.21e-53 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 176.96 E-value: 3.21e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFPY-SR-GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHrSRfDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLY 233
Cdd:PRK09536 163 LDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF 236
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
5-235 |
3.70e-53 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 172.86 E-value: 3.70e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 5 KNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQ-- 82
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQna 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 -APGfnlRLTVEELVSFGRFPYsRGVLT---EQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:PRK10253 91 tTPG---DITVQELVARGRYPH-QPLFTrwrKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYEL 235
Cdd:PRK10253 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGL 243
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
2-214 |
3.51e-51 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 166.13 E-value: 3.51e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN----KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADI----KTAVY 73
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLsekeLAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 74 AKHVATLRQApgFNL--RLTVEELVSFGRFPysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:cd03255 81 RRHIGFVFQS--FNLlpDLTALENVELPLLL--AGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFAtNYSDHIVALKNGKL 214
Cdd:cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-215 |
4.06e-49 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 161.36 E-value: 4.06e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyAKH 76
Cdd:COG1136 4 LLELRNLTKSYGTGegevTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLS----ERE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLR--------QApgFNL--RLTVEELVSFGRFPysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFL 146
Cdd:COG1136 80 LARLRrrhigfvfQF--FNLlpELTALENVALPLLL--AGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAI 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFAtNYSDHIVALKNGKLH 215
Cdd:COG1136 156 ARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELA-ARADRVIRLRDGRIV 223
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-228 |
6.48e-49 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 168.16 E-value: 6.48e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK-----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIK---TAV 72
Cdd:COG1123 260 LLEVRNLSKRYPVRgkggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSrrsLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 YAKHVATLRQAPG--FNLRLTVEELVSFGrfPYSRGVLTEQD-HQVVDEAIEFLSLEP-LRKSYIDEISGGQRQMAFLAM 148
Cdd:COG1123 340 LRRRVQMVFQDPYssLNPRMTVGDIIAEP--LRLHGLLSRAErRERVAELLERVGLPPdLADRYPHELSGGQRQRVAIAR 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:COG1123 418 ALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEVFANPQ 497
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
10-209 |
5.27e-48 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 157.40 E-value: 5.27e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 10 SYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqniadikTAVYAKHVATLRQ--APGFN 87
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTV-----------RRAGGARVAYVPQrsEVPDS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 88 LRLTVEELVSFGRFPySRGV---LTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLN 164
Cdd:NF040873 70 LPLTVRDLVAMGRWA-RRGLwrrLTRDDRAAVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLDEPTT 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 446504261 165 NLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNySDHIVAL 209
Cdd:NF040873 149 GLDAESRERIIALLAEEHAR-GATVVVVTHDLELVRR-ADPCVLL 191
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
2-214 |
1.71e-47 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 155.25 E-value: 1.71e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYaKHVATLR 81
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVK-RRIGYLP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFgrfpysrgvlteqdhqvvdeaieflsleplrksyideiSGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:cd03230 80 EEPSLYENLTVRENLKL--------------------------------------SGGMKQRLALAQALLHDPELLILDE 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446504261 162 PLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03230 122 PTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
2-229 |
2.00e-47 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 160.70 E-value: 2.00e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNiADIKTAV--------- 72
Cdd:COG1118 3 IEVRNISKRFGSFTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRD-LFTNLPPrerrvgfvf 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 --YA--KHvatlrqapgfnlrLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQ-MAfLA 147
Cdd:COG1118 82 qhYAlfPH-------------MTVAENIAFG--LRVRPPSKAEIRARVEELLELVQLEGLADRYPSQLSGGQRQrVA-LA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 148 MTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLhfsgltEQVITEA 227
Cdd:COG1118 146 RALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRI------EQVGTPD 219
|
..
gi 446504261 228 QL 229
Cdd:COG1118 220 EV 221
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
3-213 |
7.95e-47 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 153.17 E-value: 7.95e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 3 HVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVatlrq 82
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 apgfnlrltveelvsfgrfpysrgvlteqdhqvvdeaieflsleplrkSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:cd00267 76 ------------------------------------------------GYVPQLSGGQRQRVALARALLLNPDLLLLDEP 107
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446504261 163 LNNLDMKHAVQIMRALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:cd00267 108 TSGLDPASRERLLELLRELAE-EGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
17-239 |
8.43e-47 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 156.15 E-value: 8.43e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIePDKGEIFLNHQNIADIKTAVYAKHVATLRQ--APGFNLRltVEE 94
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGLL-PGQGEILLNGRPLSDWSAAELARHRAYLSQqqSPPFAMP--VFQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 95 LVSFGrfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQ-------QTDVLLLDEPLNNLD 167
Cdd:COG4138 89 YLALH---QPAGASSEAVEQLLAQLAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLLQvwptinpEGQLLLLDEPMNSLD 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 168 MKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYELDFEI 239
Cdd:COG4138 166 VAQQAALDRLLRELC-QQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVMTPENLSEVFGVKFRR 236
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
2-213 |
1.28e-46 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 153.50 E-value: 1.28e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADiktavYAKHVATLR 81
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD-----LEDELPPLR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPG-----FNL--RLTVEELVSFGrfpysrgvlteqdhqvvdeaieflsleplrksyideISGGQRQMAFLAMTIAQQT 154
Cdd:cd03229 76 RRIGmvfqdFALfpHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDP 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-223 |
5.32e-46 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 156.80 E-value: 5.32e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIktAVYAKHVATL 80
Cdd:COG3842 5 ALELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGL--PPEKRNVGMV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQApgFNL--RLTVEELVSFG-RFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:COG3842 83 FQD--YALfpHLTVAENVAFGlRM---RGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLhfsgltEQV 223
Cdd:COG3842 158 LLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRI------EQV 217
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1-195 |
1.02e-45 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 151.86 E-value: 1.02e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvYAKHVATL 80
Cdd:COG4133 2 MLEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDARED-YRRRLAYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFgrfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:COG4133 81 GHADGLKPELTVRENLRF----WAALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLD 156
|
170 180 190
....*....|....*....|....*....|....*.
gi 446504261 161 EPLNNLDmKHAVQ-IMRALRRLCdEQGRTVILVIHD 195
Cdd:COG4133 157 EPFTALD-AAGVAlLAELIAAHL-ARGGAVLLTTHQ 190
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-228 |
1.77e-45 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 159.30 E-value: 1.77e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY--GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD---KGEIFLNHQNIADIKTAVYAK 75
Cdd:COG1123 4 LLEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLELSEALRGR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 76 HVATLRQAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQT 154
Cdd:COG1123 84 RIGMVFQDPMTQLnPVTVGDQIAEA--LENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALDP 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:COG1123 162 DLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEILAAPQ 235
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1-222 |
6.39e-45 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 150.68 E-value: 6.39e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPIltDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiKTAVYAKHVATL 80
Cdd:COG3840 1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLT--ALPPAERPVSML 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPgfNL--RLTVEELVSFGRFPYSRgvLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:COG3840 77 FQEN--NLfpHLTVAQNIGLGLRPGLK--LTAEQRAQVEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVRKRPILL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 159 LDEPLNNLD--MKhavQIMRAL-RRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQ 222
Cdd:COG3840 153 LDEPFSALDpaLR---QEMLDLvDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAA 216
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
2-214 |
7.21e-45 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 149.97 E-value: 7.21e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLR 81
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFnLRLTVEELVSFGrFPYSRGVLTEQDhqvVDEAIEFLSLEP--LRKSyIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:COG4619 81 QEPAL-WGGTVRDNLPFP-FQLRERKFDRER---ALELLERLGLPPdiLDKP-VERLSGGERQRLALIRALLLQPDVLLL 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:COG4619 155 DEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
2-225 |
1.86e-44 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 149.57 E-value: 1.86e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVY---AKHVA 78
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELyrlRRRMG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRQAPGFNLRLTVEELVSFGRFPYSRGVLTEQDhQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR-EIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT 225
Cdd:cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1-214 |
4.67e-44 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 148.42 E-value: 4.67e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA---VY 73
Cdd:cd03257 1 LLEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRlrkIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 74 AKHVATLRQAPG--FNLRLTVEELVSFGRFPYSRGVLTEQDHQVVDEAIEFLSLEPLR-KSYIDEISGGQRQMAFLAMTI 150
Cdd:cd03257 81 RKEIQMVFQDPMssLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVlNRYPHELSGGQRQRVAIARAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 151 AQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
2-225 |
6.70e-44 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 148.60 E-value: 6.70e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:cd03295 1 IEFENVTKRYGGgKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVsfGRFPYSRGVLTEQDHQVVDEAIEFLSLEP--LRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:cd03295 81 IQQIGLFPHMTVEENI--ALVPKLLKWPKEKIRERADELLALVGLDPaeFADRYPHELSGGQQQRVGVARALAADPPLLL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT 225
Cdd:cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-214 |
3.34e-43 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 146.87 E-value: 3.34e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYG----NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH 76
Cdd:COG1124 1 MLEVRNLSVSYGqggrRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRRKAFRRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQAPG--FNLRLTVEELVSFgrfPYSRGVLTEQDHQVvDEAIEFLSLEP-LRKSYIDEISGGQRQMAFLAMTIAQQ 153
Cdd:COG1124 81 VQMVFQDPYasLHPRHTVDRILAE---PLRIHGLPDREERI-AELLEQVGLPPsFLDRYPHQLSGGQRQRVAIARALILE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:COG1124 157 PELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRI 217
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
2-234 |
4.14e-43 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 146.23 E-value: 4.14e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTavYAKHVATLR 81
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFG-RFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:cd03300 79 QNYALFPHLTVFENIAFGlRL---KKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 161 EPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLhfsgltEQVITEAqlnDLYE 234
Cdd:cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKI------QQIGTPE---EIYE 220
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
2-229 |
4.71e-43 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 147.21 E-value: 4.71e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG-----NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNI-ADIKTAVYA- 74
Cdd:TIGR04521 1 IKLKNVSYIYQpgtpfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDItAKKKKKLKDl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 -KHVATLRQAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPlrkSYID----EISGGQRQMAFLAM 148
Cdd:TIGR04521 81 rKKVGLVFQFPEHQLfEETVYKDIAFG--PKNLGLSEEEAEERVKEALELVGLDE---EYLErspfELSGGQMRRVAIAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:TIGR04521 156 VLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIVLDGTPREVFSDVD 235
|
.
gi 446504261 229 L 229
Cdd:TIGR04521 236 E 236
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-243 |
6.91e-43 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 146.00 E-value: 6.91e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKG---EIF---LNHQNIADIKtavya 74
Cdd:COG1119 3 LLELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGndvRLFgerRGGEDVWELR----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KH--VATLRQAPGFNLRLTVEELV------SFGRFPYsrgvLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFL 146
Cdd:COG1119 78 KRigLVSPALQLRFPRDETVLDVVlsgffdSIGLYRE----PTDEQRERARELLELLGLAHLADRPFGTLSQGEQRRVLI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:COG1119 154 ARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVLTS 233
|
250
....*....|....*..
gi 446504261 227 AQLNDLYELDFEITYSE 243
Cdd:COG1119 234 ENLSEAFGLPVEVERRD 250
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
2-223 |
1.01e-42 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 145.02 E-value: 1.01e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIE-----PDKGEIFLNHQNIADIKTAVYA-- 74
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYDLDVDVLElr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPgFNLRLTVEELVSFGrfPYSRGV-LTEQDHQVVDEAIEFLSL--EPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:cd03260 81 RRVGMVFQKP-NPFPGSIYDNVAYG--LRLHGIkLKEELDERVEEALRKAALwdEVKDRLHALGLSGGQQQRLCLARALA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEqgRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-223 |
2.43e-42 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 144.35 E-value: 2.43e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvyakhvaTL 80
Cdd:COG1127 5 MIEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEK-------EL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQapgfnLR---------------LTVEELVSFG-RFpysRGVLTEQD-HQVVDEAIEFLSLEPLRKSYIDEISGGQRQM 143
Cdd:COG1127 78 YE-----LRrrigmlfqggalfdsLTVFENVAFPlRE---HTDLSEAEiRELVLEKLELVGLPGAADKMPSELSGGMRKR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 144 AFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:COG1127 150 VALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEEL 229
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
2-231 |
2.94e-42 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 144.02 E-value: 2.94e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA------VYaK 75
Cdd:cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQernvgfVF-Q 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 76 HVATLRQapgfnlrLTVEELVSFG-RF-PYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQ 153
Cdd:cd03296 82 HYALFRH-------MTVFDNVAFGlRVkPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVE 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLhfsgltEQVITEAQLND 231
Cdd:cd03296 155 PKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI------EQVGTPDEVYD 226
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-223 |
2.95e-42 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 144.41 E-value: 2.95e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH-VAt 79
Cdd:COG0411 4 LLEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRIARLgIA- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 lR--QAPGFNLRLTVEE--------------LVSFGRFPYSRGVLTEqDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQM 143
Cdd:COG0411 83 -RtfQNPRLFPELTVLEnvlvaaharlgrglLAALLRLPRARREERE-ARERAEELLERVGLADRADEPAGNLSYGQQRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 144 AFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:COG0411 161 LEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVLDFGRVIAEGTPAEV 240
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
2-211 |
6.99e-42 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 142.61 E-value: 6.99e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIktavyAKHV 77
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP-----GPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:cd03293 76 GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKN 211
Cdd:cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1-215 |
8.12e-42 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 142.50 E-value: 8.12e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyAKHVAT 79
Cdd:COG2884 1 MIRFENVSKRYPGgREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLK----RREIPY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPG-----FNL--RLTVEELVSFG-RFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:COG2884 77 LRRRIGvvfqdFRLlpDRTVYENVALPlRV---TGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLH 215
Cdd:COG2884 154 NRPELLLADEPTGNLDPETSWEIMELLEEIN-RRGTTVLIATHDLELVDRMPKRVLELEDGRLV 216
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-212 |
9.00e-42 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 143.31 E-value: 9.00e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY----GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIktavyAKH 76
Cdd:COG1116 7 ALELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGP-----GPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQAPgfnlRL----TVEELVSFG-RFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:COG1116 82 RGVVFQEP----ALlpwlTVLDNVALGlEL---RGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNG 212
Cdd:COG1116 155 NDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDVDEAVFLADRVVVLSAR 215
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-225 |
2.41e-41 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 141.42 E-value: 2.41e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH-VAtlR- 81
Cdd:cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLgIG--Rt 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 -QAPG-FNlRLTVEELV------------SFGRFPYSRGVLTEQdhqvVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLA 147
Cdd:cd03219 81 fQIPRlFP-ELTVLENVmvaaqartgsglLLARARREEREARER----AEELLERVGLADLADRPAGELSYGQQRRLEIA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 148 MTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT 225
Cdd:cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
1-228 |
2.63e-41 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 141.67 E-value: 2.63e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyaKHVATL 80
Cdd:COG1126 1 MIEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLTDSK-----KDINKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPG-----FNL--RLTVEELVSFGrfPysRGVLTEQDHQVVDEAIEFLS---LEPLRKSYIDEISGGQRQ-MAF---L 146
Cdd:COG1126 76 RRKVGmvfqqFNLfpHLTVLENVTLA--P--IKVKKMSKAEAEERAMELLErvgLADKADAYPAQLSGGQQQrVAIaraL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMtiaqQTDVLLLDEPLNNLD--MKHAV-QIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:COG1126 152 AM----EPKVMLFDEPTSALDpeLVGEVlDVMRDLA----KEGMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEF 223
|
....*
gi 446504261 224 ITEAQ 228
Cdd:COG1126 224 FENPQ 228
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
2-214 |
1.29e-40 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 138.93 E-value: 1.29e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADiktaVYAKH--VAT 79
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTD----LPPKDrdIAM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03301 77 VFQNYALYPHMTVYDNIAFGL--KLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLM 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 160 DEPLNNLDMKHAVQiMRA-LRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03301 155 DEPLSNLDAKLRVQ-MRAeLKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
2-218 |
4.37e-40 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 137.71 E-value: 4.37e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGqVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYaKHVATLR 81
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLR-RRIGYLP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFgrFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:cd03264 79 QEFGVYPNFTVREFLDY--IAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 162 PLNNLDMKHAVqimrALRRLCDEQG--RTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03264 157 PTAGLDPEERI----RFRNLLSELGedRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-223 |
4.44e-40 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 141.36 E-value: 4.44e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA------V-- 72
Cdd:COG3839 3 SLELENVSKSYGGVEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKdrniamVfq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 -YA--KHvatlrqapgfnlrLTVEELVSFG-RFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAM 148
Cdd:COG3839 83 sYAlyPH-------------MTVYENIAFPlKL---RKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGR 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQiMRA-LRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLhfsgltEQV 223
Cdd:COG3839 147 ALVREPKVFLLDEPLSNLDAKLRVE-MRAeIKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRI------QQV 215
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
2-213 |
9.60e-40 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 135.20 E-value: 9.60e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:cd03228 1 IEFKNVSFSYPGrpKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPG-FNlrLTVEELVsfgrfpysrgvlteqdhqvvdeaieflsleplrksyideISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:cd03228 81 VPQDPFlFS--GTIRENI---------------------------------------LSGGQRQRIAIARALLRDPPILI 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINfATNYSDHIVALKNGK 213
Cdd:cd03228 120 LDEATSALDPETEALILEALRALA--KGKTVIVIAHRLS-TIRDADRIIVLDDGR 171
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
2-214 |
1.77e-39 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 136.12 E-value: 1.77e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyaKHVATLR 81
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK-----KNINELR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPG-----FNL--RLTVEELVSFGrfpySRGVLTEQDHQVVDEAIEFLS---LEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:cd03262 76 QKVGmvfqqFNLfpHLTVLENITLA----PIKVKGMSKAEAEERALELLEkvgLADKADAYPAQLSGGQQQRVAIARALA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 152 QQTDVLLLDEPLNNLD---MKHAVQIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03262 152 MNPKVMLFDEPTSALDpelVGEVLDVMKDLA----EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
17-164 |
2.19e-39 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 133.93 E-value: 2.19e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAPGFNLRLTVEELV 96
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 97 SFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYID----EISGGQRQMAFLAMTIAQQTDVLLLDEPLN 164
Cdd:pfam00005 81 RLGL--LLKGLSKREKDARAEEALEKLGLGDLADRPVGerpgTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-218 |
1.25e-38 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 141.43 E-value: 1.25e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:COG4988 337 IELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASWRRQIAWV 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFnLRLTVEELVSFGRfpysrgvlteqdHQVVDEAIEflslEPLRKSYIDE-------------------ISGGQR 141
Cdd:COG4988 417 PQNPYL-FAGTIRENLRLGR------------PDASDEELE----AALEAAGLDEfvaalpdgldtplgeggrgLSGGQA 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 142 QMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATNYsDHIVALKNGKLHFSG 218
Cdd:COG4988 480 QRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLA--KGRTVILITHRLALLAQA-DRILVLDDGRIVEQG 553
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
2-218 |
4.00e-38 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 132.34 E-value: 4.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVyaKHVATLR 81
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--RRIGALI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEE-LVSFGRfpysrgvLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:cd03268 79 EAPGFYPNLTAREnLRLLAR-------LLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 161 EPLNNLDMKhAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03268 152 EPTNGLDPD-GIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
2-218 |
7.28e-37 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 129.55 E-value: 7.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYaKHVAT 79
Cdd:cd03263 1 LQIRNLTKTYKKgtKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR-QSLGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 lrqAPGFNL---RLTVEELVSF-GRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTD 155
Cdd:cd03263 80 ---CPQFDAlfdELTVREHLRFyARL---KGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 156 VLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03263 154 VLLLDEPTSGLDPASRRAIWDLILEV--RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
3-215 |
4.66e-36 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 126.99 E-value: 4.66e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 3 HVKNINKSYGNKP-ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNiadIKTAVYAKHVATLR 81
Cdd:cd03226 1 RIENISFSYKKGTeILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP---IKAKERRKSIGYVM 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNL-RLTVEELVSFGRFPYSRGvlteqdHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:cd03226 78 QDVDYQLfTDSVREELLLGLKELDAG------NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 161 EPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLH 215
Cdd:cd03226 152 EPTSGLDYKNMERVGELIRELA-AQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
2-224 |
7.72e-36 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 134.58 E-value: 7.72e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG--NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:COG2274 474 IELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASLRRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQapgfNLRL---TVEELVSFGRFPYSrgvlteqDHQVVD-----EAIEFLSLEPLR-KSYIDE----ISGGQRQMAFL 146
Cdd:COG2274 554 VLQ----DVFLfsgTIRENITLGDPDAT-------DEEIIEaarlaGLHDFIEALPMGyDTVVGEggsnLSGGQRQRLAI 622
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVI 224
Cdd:COG2274 623 ARALLRNPRILILDEATSALDAETEAIILENLRRLL--KGRTVIIIAHRLSTIRL-ADRIIVLDKGRIVEDGTHEELL 697
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
1-214 |
3.00e-35 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 127.51 E-value: 3.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyakhVAT 79
Cdd:COG1125 1 MIEFENVTKRYPDgTVAVDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIEPTSGRILIDGEDIRDLD-------PVE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LR-------QAPGFNLRLTVEE---LVsfgrfPYSRGVLTEQDHQVVDEAIEFLSLEP--LRKSYIDEISGGQRQMAFLA 147
Cdd:COG1125 74 LRrrigyviQQIGLFPHMTVAEniaTV-----PRLLGWDKERIRARVDELLELVGLDPeeYRDRYPHELSGGQQQRVGVA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 148 MTIAQQTDVLLLDEPLNNLDmkhavQIMRA-----LRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:COG1125 149 RALAADPPILLMDEPFGALD-----PITREqlqdeLLRLQRELGKTIVFVTHDIDEALKLGDRIAVMREGRI 215
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
4-223 |
3.06e-35 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 125.24 E-value: 3.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH-VATLRQ 82
Cdd:cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAgIGYVPE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 APGFNLRLTVEELVSFGRFPYSRGVLTEQdhqvVDEAIE-FLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:cd03224 83 GRRIFPELTVEENLLLGAYARRRAKRKAR----LERVYElFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 162 PLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:cd03224 159 PSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
17-237 |
3.07e-35 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 126.20 E-value: 3.07e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIePDKGEIFLNHQNIADIKTAVYAKHVATL--RQAPGFNLRLtvee 94
Cdd:PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLsqQQTPPFAMPV---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 95 lvsfgrFPY-----SRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQ-------QTDVLLLDEP 162
Cdd:PRK03695 87 ------FQYltlhqPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQvwpdinpAGQLLLLDEP 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 163 LNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLYELDF 237
Cdd:PRK03695 161 MNSLDVAQQAALDRLLSELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNF 234
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
2-213 |
1.17e-34 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 123.54 E-value: 1.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEI-FLNHQNIADIKTavyakHVATL 80
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVlFDGKPLDIAARN-----RIGYL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTV-EELVSFGRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03269 76 PEERGLYPKMKViDQLVYLAQL---KGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLIL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 160 DEPLNNLD---MKHAVQIMRALRRlcdeQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:cd03269 153 DEPFSGLDpvnVELLKDVIRELAR----AGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-209 |
1.40e-34 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 129.71 E-value: 1.40e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK-PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:TIGR02857 322 LEFSGVSVAYPGRrPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFnLRLTVEELVSFGRFPYSRGVLTEQDHQVvdEAIEFLSLEPLR-KSYIDE----ISGGQRQMAFLAMTIAQQTD 155
Cdd:TIGR02857 402 PQHPFL-FAGTIAENIRLARPDASDAEIREALERA--GLDEFVAALPQGlDTPIGEggagLSGGQAQRLALARAFLRDAP 478
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446504261 156 VLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATNYsDHIVAL 209
Cdd:TIGR02857 479 LLLLDEPTAHLDAETEAEVLEALRALA--QGRTVLLVTHRLALAALA-DRIVVL 529
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
2-218 |
2.79e-34 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 122.60 E-value: 2.79e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPIltDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvyAKHVATLR 81
Cdd:cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--DRPVSMLF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFGRFPYSRgvLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:cd03298 77 QENNLFAHLTVEQNVGLGLSPGLK--LTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 162 PLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
2-214 |
2.89e-33 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 120.21 E-value: 2.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK-PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIK---TAVYAKHV 77
Cdd:cd03292 1 IEFINVTKTYPNGtAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRgraIPYLRRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRLTVEELVSFGRfpysrgVLTEQDHQV----VDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQ 153
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVAFAL------EVTGVPPREirkrVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKI-NKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1-233 |
3.15e-33 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 120.47 E-value: 3.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH-VAt 79
Cdd:COG0410 3 MLEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDITGLPPHRIARLgIG- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 lrQAP-GFNL--RLTVEE---LVSFGRFPYSRGvlteqdHQVVDEAIE-FLSLEPLRKSYIDEISGGQRQMAFLAMTIAQ 152
Cdd:COG0410 82 --YVPeGRRIfpSLTVEEnllLGAYARRDRAEV------RADLERVYElFPRLKERRRQRAGTLSGGEQQMLAIGRALMS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 153 QTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDL 232
Cdd:COG0410 154 RPKLLLLDEPSLGLAPLIVEEIFEIIRRLNRE-GVTILLVEQNARFALEIADRAYVLERGRIVLEGTAAELLADPEVREA 232
|
.
gi 446504261 233 Y 233
Cdd:COG0410 233 Y 233
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-218 |
3.33e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 121.35 E-value: 3.33e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN-----KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAK 75
Cdd:COG1101 1 MLELKNLSKTFNPgtvneKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLPPDSGSILIDGKDVTKLPEYKRAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 76 HVATLRQAP--GFNLRLTVEE--LVSFGR---FPYSRGVLTEQDHQVVDEAIEF-LSLEPLRKSYIDEISGGQRQMAFLA 147
Cdd:COG1101 81 YIGRVFQDPmmGTAPSMTIEEnlALAYRRgkrRGLRRGLTKKRRELFRELLATLgLGLENRLDTKVGLLSGGQRQALSLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 148 MTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGK--LHFSG 218
Cdd:COG1101 161 MATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRiiLDVSG 233
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
32-214 |
3.37e-33 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 122.99 E-value: 3.37e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 32 LIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIadIKTAVYAKHVATLRQAPGFNLRLTVEELVSFGRfpYSRGVLTEQ 111
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMTVEENVAFGL--KMRKVPRAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 112 DHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVIL 191
Cdd:TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156
|
170 180
....*....|....*....|...
gi 446504261 192 VIHDINFATNYSDHIVALKNGKL 214
Cdd:TIGR01187 157 VTHDQEEAMTMSDRIAIMRKGKI 179
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-223 |
3.71e-33 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 122.14 E-value: 3.71e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIadikTAVYAKHVATL 80
Cdd:COG4152 1 MLELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPL----DPEDRRRIGYL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEE-LVSFGRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:COG4152 77 PEERGLYPKMKVGEqLVYLARL---KGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLIL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 160 DEPLNNLDmKHAVQIMR-ALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:COG4152 154 DEPFSGLD-PVNVELLKdVIRELAA-KGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
2-218 |
1.13e-32 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 124.88 E-value: 1.13e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY--GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDLDEDDLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGF-------NLRL-----TVEEL------VSFGRFpysrgvLTEQD---HQVVDEAIEFLSleplrksyideisG 138
Cdd:COG4987 414 VPQRPHLfdttlreNLRLarpdaTDEELwaalerVGLGDW------LAALPdglDTWLGEGGRRLS-------------G 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 139 GQRQ-MAfLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATNYsDHIVALKNGKLHFS 217
Cdd:COG4987 475 GERRrLA-LARALLRDAPILLLDEPTEGLDAATEQALLADLLEAL--AGRTVLLITHRLAGLERM-DRILVLEDGRIVEQ 550
|
.
gi 446504261 218 G 218
Cdd:COG4987 551 G 551
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
2-229 |
7.22e-32 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 118.06 E-value: 7.22e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQniaDIKTAVYAKHVATL 80
Cdd:PRK15056 7 IVVNDVTVTWRNgHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ---PTRQALQKNLVAYV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAP--GFNLRLTVEELVSFGRFPYsRGVL---TEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTD 155
Cdd:PRK15056 84 PQSEevDWSFPVLVEDVVMMGRYGH-MGWLrraKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 156 VLLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKnGKLHFSGLTEQVITEAQL 229
Cdd:PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK-GTVLASGPTETTFTAENL 234
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1-218 |
7.77e-32 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 116.31 E-value: 7.77e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKP----ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLN----HQNIADIKtav 72
Cdd:cd03266 1 MITADALTKRFRDVKktvqAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDgfdvVKEPAEAR--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 yaKHVATLRQAPGFNLRLTVEE-LVSFGRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:cd03266 78 --RRLGFVSDSTGLYDRLTAREnLEYFAGL---YGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1-228 |
9.03e-32 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 116.53 E-value: 9.03e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyAKH 76
Cdd:cd03258 1 MIELKNVSKVFGDTggkvTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS----GKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQAPG-----FNL--RLTVEELVSFgrfPYS-RGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAM 148
Cdd:cd03258 77 LRKARRRIGmifqhFNLlsSRTVFENVAL---PLEiAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANPQ 233
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
17-228 |
1.01e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 118.20 E-value: 1.01e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvyaKHVATLRQAPGFNLRL------ 90
Cdd:PRK13634 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKN---KKLKPLRKKVGIVFQFpehqlf 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 91 --TVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEP--LRKSYIdEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNL 166
Cdd:PRK13634 100 eeTVEKDICFG--PMNFGVSEEDAKQKAREMIELVGLPEelLARSPF-ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 167 DMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:PRK13634 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
2-213 |
1.89e-31 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 119.28 E-value: 1.89e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvyAKHVATLR 81
Cdd:PRK09452 15 VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFG-RFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:PRK09452 93 QSYALFPHMTVFENVAFGlRM---QKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446504261 161 EPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:PRK09452 170 ESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
1-213 |
1.94e-31 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 115.42 E-value: 1.94e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyAKHVAT 79
Cdd:TIGR02673 1 MIEFHNVSKAYpGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR----GRQLPL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPG-----FNL--RLTVEELVSFgrfPYS-RGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:TIGR02673 77 LRRRIGvvfqdFRLlpDRTVYENVAL---PLEvRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
19-218 |
2.09e-31 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 115.08 E-value: 2.09e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 19 DVNVEFPT-GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAD----IKTAVYAKHVATLRQAPGFNLRLTVE 93
Cdd:cd03297 14 TLKIDFDLnEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDsrkkINLPPQQRKIGLVFQQYALFPHLNVR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 94 ELVSFGRFPYSRGVLTEQdhqvVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQ 173
Cdd:cd03297 94 ENLAFGLKRKRNREDRIS----VDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 446504261 174 IMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03297 170 LLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
7-226 |
2.25e-31 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 116.59 E-value: 2.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 7 INKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIK----TAVYAKHVATLRQ 82
Cdd:cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSrkelRELRRKKISMVFQ 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 APGFNLRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:cd03294 110 SFALLPHRTVLENVAFGL--EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 163 LNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
2-220 |
4.63e-31 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 114.19 E-value: 4.63e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEfpTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIadIKTAVYAKHVATLR 81
Cdd:TIGR01277 1 LALDKVRYEYEHLPMEFDLNVA--DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFGRFPySRGVLTEQDHQVVDEAIEfLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:TIGR01277 77 QENNLFAHLTVRQNIGLGLHP-GLKLNAEQQEKVVDAAQQ-VGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 162 PLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLT 220
Cdd:TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSDC 213
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
16-233 |
4.75e-31 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 115.69 E-value: 4.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMA-RLIEPD-------KGEIFLNHQNIADIKTAVYAKHVATLRQA--PG 85
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAgDLTGGGaprgarvTGDVTLNGEPLAAIDAPRLARLRAVLPQAaqPA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 86 FnlRLTVEELVSFGRFPYSR--GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQ---------QT 154
Cdd:PRK13547 96 F--AFSAREIVLLGRYPHARraGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQlwpphdaaqPP 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLY 233
Cdd:PRK13547 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCY 252
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-244 |
5.08e-31 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 115.88 E-value: 5.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNH-----QNIADIKtavya 74
Cdd:PRK13635 6 IRVEHISFRYPDaaTYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGmvlseETVWDVR----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPG--FnLRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAI------EFLSLEPLRksyideISGGQRQMAFL 146
Cdd:PRK13635 81 RQVGMVFQNPDnqF-VGATVQDDVAFGL--ENIGVPREEMVERVDQALrqvgmeDFLNREPHR------LSGGQKQRVAI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKS 230
|
250
....*....|....*...
gi 446504261 227 AQlnDLYELDFEITYSER 244
Cdd:PRK13635 231 GH--MLQEIGLDVPFSVK 246
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
2-224 |
5.14e-31 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 114.63 E-value: 5.14e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK-PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:cd03254 3 IEFENVNFSYDEKkPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPgFNLRLTVEELVSFGRfPYSrgvlTEQDHQVVDEAIEFLSL-EPLRKSYIDEI-------SGGQRQMAFLAMTIAQ 152
Cdd:cd03254 83 LQDT-FLFSGTIMENIRLGR-PNA----TDEEVIEAAKEAGAHDFiMKLPNGYDTVLgenggnlSQGERQLLAIARAMLR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 153 QTDVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINfATNYSDHIVALKNGKLHFSGLTEQVI 224
Cdd:cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKL--MKGRTSIIIAHRLS-TIKNADKILVLDDGKIIEEGTHDELL 225
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
5-214 |
5.86e-31 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 117.82 E-value: 5.86e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 5 KNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvyAKHVATLRQAP 84
Cdd:PRK11000 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 85 GFNLRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLN 164
Cdd:PRK11000 85 ALYPHLSVAENMSFGL--KLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446504261 165 NLDMKHAVQiMRA-LRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK11000 163 NLDAALRVQ-MRIeISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
4-233 |
1.37e-30 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 113.41 E-value: 1.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiKTAVYAKH---VATL 80
Cdd:cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT--KLPMHKRArlgIGYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEE-LVSFGRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03218 81 PQEASIFRKLTVEEnILAVLEI---RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 160 DEPLNNLDMKhAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLY 233
Cdd:cd03218 158 DEPFAGVDPI-AVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVY 230
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
2-214 |
1.41e-30 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 119.11 E-value: 1.41e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:COG1132 340 IEFENVSFSYpGDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDLTLESLRRQIGVV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPG-FNlrLTVEELVSFGRFPYSrgvlteqdhqvvDEAIEflslEPLRKSYIDE-------------------ISGGQ 140
Cdd:COG1132 420 PQDTFlFS--GTIRENIRYGRPDAT------------DEEVE----EAAKAAQAHEfiealpdgydtvvgergvnLSGGQ 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 141 RQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:COG1132 482 RQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLM--KGRTTIVIAHRLSTIRN-ADRILVLDDGRI 552
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-215 |
1.84e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 118.24 E-value: 1.84e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNhqniADIKtavyakhVATLRQA 83
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIP----KGLR-------IGYLPQE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 PGFNLRLTVEELVSFGRFP-----------YSRGVLTEQDHQVVDEAIEF---------------------LSLEPLRKS 131
Cdd:COG0488 70 PPLDDDLTVLDTVLDGDAElraleaeleelEAKLAEPDEDLERLAELQEEfealggweaearaeeilsglgFPEEDLDRP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 132 yIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMkHAVQIMRALrrLCDEQGrTVILVIHDINFATNYSDHIVALKN 211
Cdd:COG0488 150 -VSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDL-ESIEWLEEF--LKNYPG-TVLVVSHDRYFLDRVATRILELDR 224
|
....
gi 446504261 212 GKLH 215
Cdd:COG0488 225 GKLT 228
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
2-214 |
1.93e-30 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 113.57 E-value: 1.93e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqNIA----DIKTAVYAKHV 77
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-----NIAgnhfDFSKTPSDKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPG-----FNL--RLTV-EELVsfgRFPYS-RGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAM 148
Cdd:PRK11124 78 RELRRNVGmvfqqYNLwpHLTVqQNLI---EAPCRvLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK11124 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHI 219
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
2-228 |
2.37e-30 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 113.20 E-value: 2.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKpILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvyAKHVATLR 81
Cdd:cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDISYVP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:cd03299 78 QNYALFPHMTVYKNIAYGL--KKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 162 PLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPK 222
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1-226 |
3.55e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 113.63 E-value: 3.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYA--KHV 77
Cdd:PRK13639 1 ILETRDLKYSYPDgTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEvrKTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRL-TVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:PRK13639 81 GIVFQNPDDQLFApTVEEDVAFG--PLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 157 LLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1-218 |
4.11e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 117.47 E-value: 4.11e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQniadIKTAVYAKHVATL 80
Cdd:COG0488 315 VLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEPDSGTVKLGET----VKIGYFDQHQEEL 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RqaPGFNLRLTVEELVSFGRFPYSRGVL-----TEQDHQvvdeaieflsleplrkSYIDEISGGQRQMAFLAMTIAQQTD 155
Cdd:COG0488 391 D--PDKTVLDELRDGAPGGTEQEVRGYLgrflfSGDDAF----------------KPVGVLSGGEKARLALAKLLLSPPN 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 156 VLLLDEPLNNLDMkhavQIMRALRRLCDE-QGrTVILVIHDINFATNYSDHIVALKNGKL-HFSG 218
Cdd:COG0488 453 VLLLDEPTNHLDI----ETLEALEEALDDfPG-TVLLVSHDRYFLDRVATRILEFEDGGVrEYPG 512
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
16-218 |
6.08e-30 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 111.59 E-value: 6.08e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDK---GEIFLNHQniaDIKTAVYAKHVATLRQAPGFNLRLTV 92
Cdd:cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQ---PRKPDQFQKCVAYVRQDDILLPGLTV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EELVSF-----GRFPYSRGVLTEQdhqVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLD 167
Cdd:cd03234 99 RETLTYtailrLPRKSSDAIRKKR---VEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 168 MKHAVQIMRALRRLCdEQGRTVILVIH----DInFatNYSDHIVALKNGKLHFSG 218
Cdd:cd03234 176 SFTALNLVSTLSQLA-RRNRIVILTIHqprsDL-F--RLFDRILLLSSGEIVYSG 226
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
1-223 |
8.70e-30 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 112.20 E-value: 8.70e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:COG4598 8 ALEVRDLHKSFGDLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGEEIRLKPDRDGELVPADR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQA-----------PGFNL--RLTVEELVSFGrfPysRGVLTEQDHQVVDEAIEFLS---LEPLRKSYIDEISGGQRQMA 144
Cdd:COG4598 88 RQLqrirtrlgmvfQSFNLwsHMTVLENVIEA--P--VHVLGRPKAEAIERAEALLAkvgLADKRDAYPAHLSGGQQQRA 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 145 FLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:COG4598 164 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEE-GRTMLVVTHEMGFARDVSSHVVFLHQGRIEEQGPPAEV 241
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
2-214 |
9.14e-30 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 111.64 E-value: 9.14e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqNIA----DIKTAVYAKHV 77
Cdd:COG4161 3 IQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQL-----NIAghqfDFSQKPSEKAI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPG-----FNL--RLTVEE-LVSFgrfPYSrgVLTEQDHQVVDEAIEFLS---LEPLRKSYIDEISGGQRQMAFL 146
Cdd:COG4161 78 RLLRQKVGmvfqqYNLwpHLTVMEnLIEA---PCK--VLGLSKEQAREKAMKLLArlrLTDKADRFPLHLSGGQQQRVAI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRI 219
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1-225 |
1.01e-29 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 111.72 E-value: 1.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTavyakHVATL 80
Cdd:PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV-----DERLI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPG-----FNL--RLTVEELVSFGrfP-YSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQ 152
Cdd:PRK09493 76 RQEAGmvfqqFYLfpHLTALENVMFG--PlRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 153 QTDVLLLDEPLNNLD--MKHAV-QIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT 225
Cdd:PRK09493 154 KPKLMLFDEPTSALDpeLRHEVlKVMQDLA----EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
1-197 |
1.06e-29 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 110.65 E-value: 1.06e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD---KGEIFLNHQNIADIKTavYAKHV 77
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAfsaSGEVLLNGRRLTALPA--EQRRI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRLTVEELVSFGrFPysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:COG4136 79 GILFQDDLLFPHLSVGENLAFA-LP--PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRAL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446504261 158 LLDEPLNNLDMKHAVQImralRRLCDEQGRT----VILVIHDIN 197
Cdd:COG4136 156 LLDEPFSKLDAALRAQF----REFVFEQIRQrgipALLVTHDEE 195
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
2-223 |
1.06e-29 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 114.03 E-value: 1.06e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIA-----DIKTAVYAKH 76
Cdd:PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSrlharDRKVGFVFQH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQapgfnlrLTVEELVSFGR--FPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQT 154
Cdd:PRK10851 83 YALFRH-------MTVFDNIAFGLtvLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:PRK10851 156 QILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-229 |
1.27e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 112.25 E-value: 1.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiktaVYAKHVAT 79
Cdd:PRK13636 5 ILKVEELNYNYSDgTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID-----YSRKGLMK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLR--------LTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:PRK13636 80 LRESVGMVFQdpdnqlfsASVYQDVSFG--AVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQL 229
Cdd:PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEM 235
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
6-223 |
1.39e-29 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 113.67 E-value: 1.39e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 6 NINKSYGNKPIltDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAD----IKTAVYAKHVATLR 81
Cdd:TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDsrkgIFLPPEKRRIGYVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFGRfpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:TIGR02142 82 QEARLFPHLSVRGNLRYGM----KRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 162 PLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-224 |
1.75e-29 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 110.94 E-value: 1.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY----------------------GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEI 58
Cdd:COG1134 4 MIEVENVSKSYrlyhepsrslkelllrrrrtrrEEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 59 FLNhqniadiktavyaKHVATL--RQApGFNLRLTVEELVSF-GRFpysRGVLTEQDHQVVDEAIEFLSLEPlrksYIDE 135
Cdd:COG1134 84 EVN-------------GRVSALleLGA-GFHPELTGRENIYLnGRL---LGLSRKEIDEKFDEIVEFAELGD----FIDQ 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 136 ----ISGGQR-QMAFlAMTIAQQTDVLLLDEPLNNLD---MKHAVQIMRALRrlcdEQGRTVILVIHDINFATNYSDHIV 207
Cdd:COG1134 143 pvktYSSGMRaRLAF-AVATAVDPDILLVDEVLAVGDaafQKKCLARIRELR----ESGRTVIFVSHSMGAVRRLCDRAI 217
|
250
....*....|....*..
gi 446504261 208 ALKNGKLHFSGLTEQVI 224
Cdd:COG1134 218 WLEKGRLVMDGDPEEVI 234
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-214 |
1.96e-29 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 108.67 E-value: 1.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIadiktavyakHVATLRQA 83
Cdd:cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV----------SFASPRDA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 pgfnLRLTVeELVsfgrfpysrgvlteqdHQvvdeaieflsleplrksyideISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:cd03216 73 ----RRAGI-AMV----------------YQ---------------------LSVGERQMVEIARALARNARLLILDEPT 110
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446504261 164 NNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03216 111 AALTPAEVERLFKVIRRLR-AQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
5-214 |
3.89e-29 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 112.51 E-value: 3.89e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 5 KNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiKTAVYAKHVATLRQAP 84
Cdd:PRK11432 10 KNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT--HRSIQQRDICMVFQSY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 85 GFNLRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLN 164
Cdd:PRK11432 88 ALFPHMSLGENVGYGL--KMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLS 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446504261 165 NLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK11432 166 NLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1-196 |
1.11e-28 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 109.18 E-value: 1.11e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN----KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNI----ADiKTAV 72
Cdd:COG4525 3 MLTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVtgpgAD-RGVV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 YAKHvATLrqaPGfnlrLTVEELVSFG-RFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:COG4525 82 FQKD-ALL---PW----LNVLDNVAFGlRL---RGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALA 150
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDI 196
Cdd:COG4525 151 ADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSV 195
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
2-228 |
1.95e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 109.37 E-value: 1.95e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG-----NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAD--IKTAVYA 74
Cdd:PRK13637 3 IKIENLTHIYMegtpfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDkkVKLSDIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEplRKSYID----EISGGQRQMAFLAMT 149
Cdd:PRK13637 83 KKVGLVFQYPEYQLfEETIEKDIAFG--PINLGLSEEEIENRVKRAMNIVGLD--YEDYKDkspfELSGGQKRRVAIAGV 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
2-213 |
2.17e-28 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 105.22 E-value: 2.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLnhqniadiktavyakhvatlr 81
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW--------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 qapGFNLRLtveelvsfgrfpysrgvlteqdhqvvdeaieflsleplrkSYIDEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:cd03221 60 ---GSTVKI----------------------------------------GYFEQLSGGEKMRLALAKLLLENPNLLLLDE 96
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 446504261 162 PLNNLDMKHAVQIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:cd03221 97 PTNHLDLESIEALEEALK----EYPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
8-218 |
2.40e-28 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 107.62 E-value: 2.40e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 8 NKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqniaDIKTAVyakhVATLRQAPGFN 87
Cdd:cd03220 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV--------TVRGRV----SSLLGLGGGFN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 88 LRLTVEELVSF-GRFpysRGVLTEQDHQVVDEAIEFLSLEPlrksYIDE----ISGGQR-QMAFlAMTIAQQTDVLLLDE 161
Cdd:cd03220 97 PELTGRENIYLnGRL---LGLSRKEIDEKIDEIIEFSELGD----FIDLpvktYSSGMKaRLAF-AIATALEPDILLIDE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 162 PLNNLD---MKHAVQIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03220 169 VLAVGDaafQEKCQRRLRELL----KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
4-226 |
8.24e-28 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 106.07 E-value: 8.24e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH-VATLRQ 82
Cdd:TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAgIAYVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 APGFNLRLTVEE--LVSFGRFPysrgvltEQDHQVVDEAIE-FLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:TIGR03410 83 GREIFPRLTVEEnlLTGLAALP-------RRSRKIPDEIYElFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1-228 |
1.16e-27 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 108.24 E-value: 1.16e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTavyakh 76
Cdd:COG1135 1 MIELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSE------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 vATLRQA--------PGFNL--RLTVEELVSfgrFP--YSrGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMA 144
Cdd:COG1135 75 -RELRAArrkigmifQHFNLlsSRTVAENVA---LPleIA-GVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 145 FLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVI 224
Cdd:COG1135 150 GIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVF 229
|
....
gi 446504261 225 TEAQ 228
Cdd:COG1135 230 ANPQ 233
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-233 |
1.27e-27 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 106.64 E-value: 1.27e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDK---------GEIFLNHQNIA-DIKT 70
Cdd:PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagshiellGRTVQREGRLArDIRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 71 AvyAKHVATLRQApgFNL--RLTVEELV---SFGRFPYSRGVL---TEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQ 142
Cdd:PRK09984 84 S--RANTGYIFQQ--FNLvnRLSVLENVligALGSTPFWRTCFswfTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 143 MAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQ 222
Cdd:PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239
|
250
....*....|.
gi 446504261 223 VITEaQLNDLY 233
Cdd:PRK09984 240 FDNE-RFDHLY 249
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
2-225 |
1.81e-27 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 105.89 E-value: 1.81e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIE--PD---KGEIFLNHQNIADIKTAVYA-- 74
Cdd:COG1117 12 IEVRNLNVYYGDKQALKDINLDIPENKVTALIGPSGCGKSTLLRCLNRMNDliPGarvEGEILLDGEDIYDPDVDVVElr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPgfN-LRLTVEELVSFGrfPYSRGVLteqDHQVVDEAIEflslEPLRKSYI-DEI-----------SGGQR 141
Cdd:COG1117 92 RRVGMVFQKP--NpFPKSIYDNVAYG--LRLHGIK---SKSELDEIVE----ESLRKAALwDEVkdrlkksalglSGGQQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 142 QMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEqgRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTE 221
Cdd:COG1117 161 QRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKKD--YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTE 238
|
....
gi 446504261 222 QVIT 225
Cdd:COG1117 239 QIFT 242
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-225 |
1.94e-27 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 105.77 E-value: 1.94e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIE--PD---KGEIFLNHQNIADIKTAVYAKH 76
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIElyPEarvSGEVYLDGQDIFKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQAPGFNLRLTVEELVSFG----RFPYSRGVLTEQdhqvVDEAIEFLSLEPLRKSYID----EISGGQRQMAFLAM 148
Cdd:PRK14247 84 VQMVFQIPNPIPNLSIFENVALGlklnRLVKSKKELQER----VRWALEKAQLWDEVKDRLDapagKLSGGQQQRLCIAR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQgrTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT 225
Cdd:PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM--TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
2-222 |
2.26e-27 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 104.76 E-value: 2.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKhVATLR 81
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR-IGIVF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLT-VEELVSFGR-FPYSRGVLTEQdhqvVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03265 80 QDLSVDDELTgWENLYIHARlYGVPGAERRER----IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQ 222
Cdd:cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-231 |
2.41e-27 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 106.24 E-value: 2.41e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYA--KHVA 78
Cdd:PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAlrQQVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRQAPGFNLRLT-VEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:PRK13638 81 TVFQDPEQQIFYTdIDSDIAFSL--RNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLND 231
Cdd:PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIV-AQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAME 231
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
2-228 |
6.52e-27 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 104.67 E-value: 6.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNI-----ADIKTAVYAKH 76
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTInlvrdKDGQLKVADKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQA------PGFNL--RLTVEELVSfgRFPYSrgVLTEQDHQVVDEAIEFLSL----EPLRKSYIDEISGGQRQMA 144
Cdd:PRK10619 86 QLRLLRTrltmvfQHFNLwsHMTVLENVM--EAPIQ--VLGLSKQEARERAVKYLAKvgidERAQGKYPVHLSGGQQQRV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 145 FLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVI 224
Cdd:PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
....
gi 446504261 225 TEAQ 228
Cdd:PRK10619 241 GNPQ 244
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
2-218 |
1.42e-26 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 101.86 E-value: 1.42e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINK------SYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLL--MMMARLIEPDKGEIFLNHQNIADIKtavY 73
Cdd:cd03213 4 LSFRNLTVtvksspSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLnaLAGRRTGLGVSGEVLINGRPLDKRS---F 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 74 AKHVATLRQAPGFNLRLTVEELVSFgrfpysrgvlteqdhqvvdeaieflSLEpLRKsyideISGGQRQMAFLAMTIAQQ 153
Cdd:cd03213 81 RKIIGYVPQDDILHPTLTVRETLMF-------------------------AAK-LRG-----LSGGERKRVSIALELVSN 129
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIHDI-NFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPsSEIFELFDKLLLLSQGRVIYFG 194
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1-225 |
1.86e-26 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 102.74 E-value: 1.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEfpTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiKTAVYAKHVATL 80
Cdd:PRK10771 1 MLKLTDITWLYHHLPMRFDLTVE--RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT--TTPPSRRPVSML 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFPYSRgvLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLK--LNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 161 EPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT 225
Cdd:PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-229 |
4.32e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 102.96 E-value: 4.32e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:PRK13652 3 LIETRDLCYSYsGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:PRK13652 83 VFQNPDDQIfSPTVEQDIAFG--PINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQL 229
Cdd:PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1-232 |
6.16e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 102.37 E-value: 6.16e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADI-KTAVYAKHVA 78
Cdd:PRK13644 1 MIRLENVSYSYPDgTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFsKLQGIRKLVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRQAP--GFNLRlTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:PRK13644 81 IVFQNPetQFVGR-TVEEDLAFG--PENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 157 LLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINfATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDL 232
Cdd:PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLE-ELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-223 |
7.06e-26 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 104.15 E-value: 7.06e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTavYAKHVATL 80
Cdd:PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFG----RFPysRGVLTEQdhqvVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:PRK11607 97 FQSYALFPHMTVEQNIAFGlkqdKLP--KAEIASR----VNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 157 LLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:PRK11607 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
2-214 |
9.22e-26 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 101.15 E-value: 9.22e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG-NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:cd03253 1 IEFENVTFAYDpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQ-APGFNlrLTVEELVSFGRfpysrgvLTEQDHQVVDEAieflsleplRKSYIDE-------------------ISGGQ 140
Cdd:cd03253 81 PQdTVLFN--DTIGYNIRYGR-------PDATDEEVIEAA---------KAAQIHDkimrfpdgydtivgerglkLSGGE 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 141 RQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHRLSTIVN-ADKIIVLKDGRI 213
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1-199 |
1.02e-25 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 101.31 E-value: 1.02e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAD--IKTAVYAKHVA 78
Cdd:PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGpgAERGVVFQNEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLrqaPGFNlrltVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:PRK11248 81 LL---PWRN----VQDNVAFGL--QLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFA 199
Cdd:PRK11248 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
23-207 |
1.10e-25 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 100.95 E-value: 1.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 23 EFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQapgfnlrLTVEELVSFGRFP 102
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD-------LLSSITKDFYTHP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 103 YSRgvlteqdhqvvDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLC 182
Cdd:cd03237 94 YFK-----------TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
170 180
....*....|....*....|....*
gi 446504261 183 DEQGRTVILVIHDINFATNYSDHIV 207
Cdd:cd03237 163 ENNEKTAFVVEHDIIMIDYLADRLI 187
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
2-224 |
1.29e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 102.09 E-value: 1.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK-PI----LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH 76
Cdd:PRK13651 3 IKVKNIVKIFNKKlPTelkaLDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VAT-----------LRQAPGFNLRL--------------TVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSL--EPLR 129
Cdd:PRK13651 83 VLEklviqktrfkkIKKIKEIRRRVgvvfqfaeyqlfeqTIEKDIIFG--PVSMGVSKEEAKKRAAKYIELVGLdeSYLQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 130 KSYIdEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVAL 209
Cdd:PRK13651 161 RSPF-ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKRTIFF 238
|
250
....*....|....*
gi 446504261 210 KNGKLHFSGLTEQVI 224
Cdd:PRK13651 239 KDGKIIKDGDTYDIL 253
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1-214 |
1.61e-25 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 101.04 E-value: 1.61e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY---------GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA 71
Cdd:TIGR02769 2 LLEVRDVTHTYrtgglfgakQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 72 ---VYAKHVATLRQ-APG-FNLRLTVEELVSFGRFPYSRGVLTEQDHQvvdeAIEFLSLEPLRKSYID----EISGGQRQ 142
Cdd:TIGR02769 82 qrrAFRRDVQLVFQdSPSaVNPRMTVRQIIGEPLRHLTSLDESEQKAR----IAELLDMVGLRSEDADklprQLSGGQLQ 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 143 MAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-242 |
1.82e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 101.35 E-value: 1.82e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYG---NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIF-----LNHQNIADIKtav 72
Cdd:PRK13650 4 IIEVKNLTFKYKedqEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIidgdlLTEENVWDIR--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 yaKHVATLRQAPGFN-LRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:PRK13650 81 --HKIGMVFQNPDNQfVGATVEDDVAFGL--ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATnYSDHIVALKNGKLHFSGLTEQVIteAQLND 231
Cdd:PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELF--SRGND 233
|
250
....*....|.
gi 446504261 232 LYELDFEITYS 242
Cdd:PRK13650 234 LLQLGLDIPFT 244
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
17-238 |
2.15e-25 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 99.85 E-value: 2.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADI---KTAVYAKHV----ATLRQapgfNLR 89
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPgpdRMVVFQNYSllpwLTVRE----NIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 90 LTVEELVsfgrfpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMK 169
Cdd:TIGR01184 77 LAVDRVL--------PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 170 HAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKlhfsglteqvitEAQLNDLYELDFE 238
Cdd:TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGP------------AANIGQILEVPFP 205
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1-235 |
2.40e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 101.35 E-value: 2.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYG-NKPI----LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqNIADI--KTAVY 73
Cdd:PRK13643 1 MIKFEKVNYTYQpNSPFasraLFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-----TVGDIvvSSTSK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 74 AKHVATLRQAPGFNLRL--------TVEELVSFGrfPYSRGVLTEQDHQVVDEAIEF--LSLEPLRKSYIdEISGGQRQM 143
Cdd:PRK13643 76 QKEIKPVRKKVGVVFQFpesqlfeeTVLKDVAFG--PQNFGIPKEKAEKIAAEKLEMvgLADEFWEKSPF-ELSGGQMRR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 144 AFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
250
....*....|..
gi 446504261 224 ITEAQLNDLYEL 235
Cdd:PRK13643 232 FQEVDFLKAHEL 243
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1-162 |
3.40e-25 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 99.33 E-value: 3.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIktAVY--AKH-V 77
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDITHL--PMHkrARLgI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRLTVEELVsfgrfpysRGVL------TEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:COG1137 81 GYLPQEASIFRKLTVEDNI--------LAVLelrklsKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALA 152
|
170
....*....|.
gi 446504261 152 QQTDVLLLDEP 162
Cdd:COG1137 153 TNPKFILLDEP 163
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
9-213 |
5.26e-25 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 98.31 E-value: 5.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 9 KSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNhQNIAdiktavYAKHVATLRQApgfnl 88
Cdd:cd03250 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP-GSIA------YVSQEPWIQNG----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 89 rlTVEELVSFGRfPYsrgvlteqDHQVVDEAIEFLSLEP-LR------KSYIDE----ISGGQRQMAFLAMTIAQQTDVL 157
Cdd:cd03250 81 --TIRENILFGK-PF--------DEERYEKVIKACALEPdLEilpdgdLTEIGEkginLSGGQKQRISLARAVYSDADIY 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 158 LLDEPLNNLDMKHAVQIMR-----ALRRlcdeqGRTVILVIHDINFATnYSDHIVALKNGK 213
Cdd:cd03250 150 LLDDPLSAVDAHVGRHIFEncilgLLLN-----NKTRILVTHQLQLLP-HADQIVVLDNGR 204
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-229 |
1.10e-24 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 102.02 E-value: 1.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQ--NIADIKTAVyAKHVATLR 81
Cdd:COG1129 7 MRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEpvRFRSPRDAQ-AAGIAIIH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QApgFNL--RLTVEELVSFGRFPYSRGVLteqDH-QVVDEAIEFL-----SLEPLRKsyIDEISGGQRQMAFLAMTIAQQ 153
Cdd:COG1129 86 QE--LNLvpNLSVAENIFLGREPRRGGLI---DWrAMRRRARELLarlglDIDPDTP--VGDLSVAQQQLVEIARALSRD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 154 TDVLLLDEP---LNNLDMKHAVQIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQViTEAQL 229
Cdd:COG1129 159 ARVLILDEPtasLTEREVERLFRIIRRLK----AQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL-TEDEL 232
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
12-195 |
1.20e-24 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 102.05 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 12 GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAP------- 84
Cdd:TIGR02868 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAhlfdttv 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 85 GFNLRLtveelvsfgrfpySRGVLTEQDhqvVDEAIEFLSLEPLRKSYID-----------EISGGQRQMAFLAMTIAQQ 153
Cdd:TIGR02868 426 RENLRL-------------ARPDATDEE---LWAALERVGLADWLRALPDgldtvlgeggaRLSGGERQRLALARALLAD 489
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALrrLCDEQGRTVILVIHD 195
Cdd:TIGR02868 490 APILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHH 529
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
2-229 |
1.24e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 99.04 E-value: 1.24e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY--GNKPiLTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIF-----LNHQNIADIKtavya 74
Cdd:PRK13647 5 IEVEDLHFRYkdGTKA-LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKvmgreVNAENEKWVR----- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQ 153
Cdd:PRK13647 79 SKVGLVFQDPDDQVfSSTVWDDVAFG--PVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG-----LTEQVITEAQ 228
Cdd:PRK13647 157 PDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGdksllTDEDIVEQAG 235
|
.
gi 446504261 229 L 229
Cdd:PRK13647 236 L 236
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
2-229 |
1.32e-24 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 99.05 E-value: 1.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG-----NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIA------DIKT 70
Cdd:PRK13649 3 INLQNVSYTYQagtpfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITstsknkDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 71 AvyAKHVATLRQAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSL-EPLRKSYIDEISGGQRQMAFLAM 148
Cdd:PRK13649 83 I--RKKVGLVFQFPESQLfEETVLKDVAFG--PQNFGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVD 237
|
.
gi 446504261 229 L 229
Cdd:PRK13649 238 F 238
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-215 |
3.16e-24 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 96.73 E-value: 3.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIA----DIKTAV 72
Cdd:COG4181 8 IIELRGLTKTVGTGagelTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFaldeDARARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 YAKHVATLRQApgFNL--RLTVEELVS-----FGRfpysrgvltEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAF 145
Cdd:COG4181 88 RARHVGFVFQS--FQLlpTLTALENVMlplelAGR---------RDARARARALLERVGLGHRLDHYPAQLSGGEQQRVA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 146 LAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFAtNYSDHIVALKNGKLH 215
Cdd:COG4181 157 LARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALA-ARCDRVLRLRAGRLV 225
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-214 |
4.07e-24 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 97.13 E-value: 4.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNI-ADIKTAVYAKHVAT 79
Cdd:PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIdTARSLSQQKGLIRQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLRltveelvSFGRFPYsRGVLT-----------EQDHQVVDEAIEFLS---LEPLRKSYIDEISGGQRQMAF 145
Cdd:PRK11264 83 LRQHVGFVFQ-------NFNLFPH-RTVLEniiegpvivkgEPKEEATARARELLAkvgLAGKETSYPRRLSGGQQQRVA 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 146 LAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQgRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-226 |
4.25e-24 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 98.75 E-value: 4.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEI-FLNHQNIADIKTAvyAKHVATL 80
Cdd:PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKItVLGVPVPARARLA--RARIGVV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEE-LVSFGRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:PRK13536 120 PQFDNLDLEFTVREnLLVFGRY---FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 160 DEPLNNLDmKHAVQ-IMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK13536 197 DEPTTGLD-PHARHlIWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
13-212 |
4.94e-24 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 95.86 E-value: 4.94e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 13 NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH----VATLRQAPGFnL 88
Cdd:cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRnrysVAYAAQKPWL-L 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 89 RLTVEELVSFGRfPYSRgvlteQDHQVVDEAIeflSLEPL-------RKSYIDE----ISGGQRQMAFLAMTIAQQTDVL 157
Cdd:cd03290 92 NATVEENITFGS-PFNK-----QRYKAVTDAC---SLQPDidllpfgDQTEIGErginLSGGQRQRICVARALYQNTNIV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 158 LLDEPLNNLDMKHAVQIMRA-LRRLCDEQGRTVILVIHDINFATnYSDHIVALKNG 212
Cdd:cd03290 163 FLDDPFSALDIHLSDHLMQEgILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-228 |
6.69e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 96.74 E-value: 6.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-GNKPI-LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVA 78
Cdd:PRK13648 7 IIVFKNVSFQYqSDASFtLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRQAPGFN-LRLTVEELVSFGRFPYSrgVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:PRK13648 87 IVFQNPDNQfVGSIVKYDVAFGLENHA--VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAE 234
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
2-241 |
1.03e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 96.79 E-value: 1.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGE--------IFLNHQNIADIKta 71
Cdd:PRK13640 6 VEFKHVSFTYPDskKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnskitvdgITLTAKTVWDIR-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 72 vyaKHVATLRQAPGFN-LRLTVEELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTI 150
Cdd:PRK13640 84 ---EKVGIVFQNPDNQfVGATVGDDVAFGL--ENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 151 AQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFAtNYSDHIVALKNGKLHFSGLTEQVITEAQLN 230
Cdd:PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEML 237
|
250
....*....|.
gi 446504261 231 DLYELDFEITY 241
Cdd:PRK13640 238 KEIGLDIPFVY 248
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1-242 |
1.07e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 96.21 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIF-----LNHQNIADIKtavy 73
Cdd:PRK13632 7 MIKVENVSFSYPNseNNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKidgitISKENLKEIR---- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 74 aKHVATLRQAPG--FnLRLTVEELVSFG----RFPYS--RGVLTEQDHQVVDEaiEFLSLEPLrksyidEISGGQRQMAF 145
Cdd:PRK13632 83 -KKIGIIFQNPDnqF-IGATVEDDIAFGlenkKVPPKkmKDIIDDLAKKVGME--DYLDKEPQ------NLSGGQKQRVA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 146 LAMTIAQQTDVLLLDEPLNNLDMK---HAVQIMRALRrlcDEQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQ 222
Cdd:PRK13632 153 IASVLALNPEIIIFDESTSMLDPKgkrEIKKIMVDLR---KTRKKTLISITHDMDEAIL-ADKVIVFSEGKLIAQGKPKE 228
|
250 260
....*....|....*....|
gi 446504261 223 VITEAQLNDLYELDFEITYS 242
Cdd:PRK13632 229 ILNNKEILEKAKIDSPFIYK 248
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
2-214 |
1.14e-23 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 94.96 E-value: 1.14e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPI--LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:cd03245 3 IEFRNVSFSYPNQEIpaLDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQapgfNLRL---TVEELVSFGRfPYSrgvlteqDHQVVDEAIEFLSLEPLRKSY-------IDE----ISGGQRQMAF 145
Cdd:cd03245 83 VPQ----DVTLfygTLRDNITLGA-PLA-------DDERILRAAELAGVTDFVNKHpngldlqIGErgrgLSGGQRQAVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 146 LAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATnYSDHIVALKNGKL 214
Cdd:cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL--GDKTLIIITHRPSLLD-LVDRIIVMDSGRI 216
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
3-214 |
1.15e-23 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 95.23 E-value: 1.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 3 HVK--NINKSYGNKP---ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHV 77
Cdd:cd03248 11 IVKfqNVTFAYPTRPdtlVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRlTVEELVSFGRFPYSRGVLTEQdhQVVDEAIEFLSLepLRKSYIDE-------ISGGQRQMAFLAMTI 150
Cdd:cd03248 91 SLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEA--AQKAHAHSFISE--LASGYDTEvgekgsqLSGGQKQRVAIARAL 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 151 AQQTDVLLLDEPLNNLDMKHAVQIMRALRrlCDEQGRTVILVIHDINfATNYSDHIVALKNGKL 214
Cdd:cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALY--DWPERRTVLVIAHRLS-TVERADQILVLDGGRI 226
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
2-213 |
1.98e-23 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 94.60 E-value: 1.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK--PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:cd03251 1 VEFKNVTFRYPGDgpPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPgFNLRLTVEELVSFGRFPYSRGVLTEQDHQVvdEAIEFL-SLEPLRKSYIDE----ISGGQRQMAFLAMTIAQQT 154
Cdd:cd03251 81 VSQDV-FLFNDTVAENIAYGRPGATREEVEEAARAA--NAHEFImELPEGYDTVIGErgvkLSGGQRQRIAIARALLKDP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNySDHIVALKNGK 213
Cdd:cd03251 158 PILILDEATSALDTESERLVQAALERL--MKNRTTFVIAHRLSTIEN-ADRIVVLEDGK 213
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
17-224 |
2.15e-23 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 97.80 E-value: 2.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA----VYAKHVATLRQAPGFNLRLTV 92
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAelreVRRKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EELVSFGRfpYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAV 172
Cdd:PRK10070 124 LDNTAFGM--ELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 446504261 173 QIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVI 224
Cdd:PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
1-208 |
2.18e-23 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 95.60 E-value: 2.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADI-KTAVYA--KHV 77
Cdd:PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMsRSRLYTvrKRM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRLTVEELVSFGRFPYSRgvLTEQD-HQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQ--LPAPLlHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 157 LLLDEPLNNLDmkhaVQIMRALRRLCDE----QGRTVILVIHDINFATNYSDH--IVA 208
Cdd:PRK11831 165 IMFDEPFVGQD----PITMGVLVKLISElnsaLGVTCVVVSHDVPEVLSIADHayIVA 218
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
2-213 |
2.65e-23 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 94.53 E-value: 2.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKP---ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVA 78
Cdd:cd03249 1 IEFKNVSFRYPSRPdvpILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRQAPG-FNlrLTVEELVSFGRFPysrGVLTEQDHQVVDEAI-EFLSLEPlrKSYIDEI-------SGGQRQMAFLAMT 149
Cdd:cd03249 81 LVSQEPVlFD--GTIAENIRYGKPD---ATDEEVEEAAKKANIhDFIMSLP--DGYDTLVgergsqlSGGQKQRIAIARA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINfATNYSDHIVALKNGK 213
Cdd:cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIRNADLIAVLQNGQ 214
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
2-214 |
2.70e-23 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 92.66 E-value: 2.70e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG--NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:cd03246 1 LEVENVSFRYPgaEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LrqapgfnlrltveelvsfgrfpysrgvltEQDHQVVDEAIeflsleplrksyIDEI-SGGQRQMAFLAMTIAQQTDVLL 158
Cdd:cd03246 81 L-----------------------------PQDDELFSGSI------------AENIlSGGQRQRLGLARALYGNPRILV 119
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINfATNYSDHIVALKNGKL 214
Cdd:cd03246 120 LDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPE-TLASADRILVLEDGRV 173
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-233 |
4.18e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 94.52 E-value: 4.18e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD-----KGEIFLNHQNI--ADIKTAVYA 74
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNeearvEGEVRLFGRNIysPDVDPIEVR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPGFNLRLTVEELVSFG----RFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTI 150
Cdd:PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGvklnGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 151 AQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQgrTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT--EAQ 228
Cdd:PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY--TIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEnpEHE 242
|
....*
gi 446504261 229 LNDLY 233
Cdd:PRK14267 243 LTEKY 247
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1-209 |
6.72e-23 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 93.24 E-value: 6.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVsfgrFPYS-RGVLTEQDHQVVDEAIEFLSLEPLRKSyIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:PRK10247 87 AQTPTLFGDTVYDNLI----FPWQiRNQQPDPAIFLDDLERFALPDTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINfATNYSDHIVAL 209
Cdd:PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EINHADKVITL 210
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-234 |
8.36e-23 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 95.30 E-value: 8.36e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK-PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA------V- 72
Cdd:PRK11650 3 GLKLQAVRKSYDGKtQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAdrdiamVf 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 --YA--KHVaTLRQAPGFNLRLtveelvsfgrfpysRGVLTEQDHQVVDEAIEFLSLEPL--RKSyiDEISGGQRQMafL 146
Cdd:PRK11650 83 qnYAlyPHM-SVRENMAYGLKI--------------RGMPKAEIEERVAEAARILELEPLldRKP--RELSGGQRQR--V 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AM--TIAQQTDVLLLDEPLNNLDMKHAVQiMRA-LRRLCDEQGRTVILVIHDINFATNYSDHIVALkNGklhfsGLTEQV 223
Cdd:PRK11650 144 AMgrAIVREPAVFLFDEPLSNLDAKLRVQ-MRLeIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVM-NG-----GVAEQI 216
|
250
....*....|.
gi 446504261 224 ITEAqlnDLYE 234
Cdd:PRK11650 217 GTPV---EVYE 224
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-229 |
1.21e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 93.61 E-value: 1.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGN------KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavya 74
Cdd:PRK13633 4 MIKCKNVSYKYESneesteKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE----- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 kHVATLRQAPGFNLR--------LTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFL 146
Cdd:PRK13633 79 -NLWDIRNKAGMVFQnpdnqivaTIVEEDVAFG--PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
...
gi 446504261 227 AQL 229
Cdd:PRK13633 235 VEM 237
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
2-228 |
1.28e-22 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 96.47 E-value: 1.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIktavyakHVAT 79
Cdd:TIGR03375 464 IEFRNVSFAYPGqeTPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI-------DPAD 536
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGF---NLRL---TVEELVSFGRfPYSRgvlteqDHQVVDEA-----IEFLSLEPlrKSY---IDE----ISGGQR 141
Cdd:TIGR03375 537 LRRNIGYvpqDPRLfygTLRDNIALGA-PYAD------DEEILRAAelagvTEFVRRHP--DGLdmqIGErgrsLSGGQR 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 142 QMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFaTNYSDHIVALKNGKLHFSGLTE 221
Cdd:TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSL-LDLVDRIIVMDNGRIVADGPKD 684
|
....*..
gi 446504261 222 QVITEAQ 228
Cdd:TIGR03375 685 QVLEALR 691
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-213 |
1.34e-22 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 94.10 E-value: 1.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiKTAVYAK-HVATL 80
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP--SRARHARqRVGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQ----APGFNLRltvEELVSFGRFpysRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:PRK13537 86 PQfdnlDPDFTVR---ENLLVFGRY---FGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 157 LLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:PRK13537 160 LVLDEPTTGLDPQARHLMWERLRSLL-ARGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
2-214 |
1.50e-22 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 96.32 E-value: 1.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG--NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:TIGR02203 331 VEFRNVTFRYPgrDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQapgfNLRL---TVEELVSFGRFpysrgvlteqdHQVVDEAIEFLSLEPLRKSYIDE---------------ISGGQR 141
Cdd:TIGR02203 411 VSQ----DVVLfndTIANNIAYGRT-----------EQADRAEIERALAAAYAQDFVDKlplgldtpigengvlLSGGQR 475
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 142 QMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERL--MQGRTTLVIAHRLSTIEK-ADRIVVMDDGRI 545
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
2-226 |
2.47e-22 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 95.58 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG-NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:TIGR01193 474 IVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPgFNLRLTVEELVSFGrfpySRGVLTEQDhqvVDEAIEFLSL----EPLRKSYIDE-------ISGGQRQMAFLAMT 149
Cdd:TIGR01193 554 PQEP-YIFSGSILENLLLG----AKENVSQDE---IWAACEIAEIkddiENMPLGYQTElseegssISGGQKQRIALARA 625
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDeqgRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVITE 226
Cdd:TIGR01193 626 LLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD---KTIIFVAHRLSVAKQ-SDKIIVLDHGKIIEQGSHDELLDR 698
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
27-223 |
3.44e-22 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 91.07 E-value: 3.44e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqNIADIKTAVYAKHVATLRQAPGF--NLRLTVEELVSFGRF--- 101
Cdd:TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTV-----KVAGASPGKGWRHIGYVPQRHEFawDFPISVAHTVMSGRTghi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 102 -PYSRGvlTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRR 180
Cdd:TIGR03771 81 gWLRRP--CVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 446504261 181 LCDEqGRTVILVIHDINFATNYSDHIVaLKNGKLHFSGLTEQV 223
Cdd:TIGR03771 159 LAGA-GTAILMTTHDLAQAMATCDRVV-LLNGRVIADGTPQQL 199
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1-205 |
4.15e-22 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 90.39 E-value: 4.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIaDIKTAVYAKHVATL 80
Cdd:PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-KKDLCTYQKQLCFV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGrFPYSRGVLTeqdhqvVDEAIEFLSLEPLRKSYIDEISGGQ-RQMAFLAMTIAqQTDVLLL 159
Cdd:PRK13540 80 GHRSGINPYLTLRENCLYD-IHFSPGAVG------ITELCRLFSLEHLIDYPCGLLSSGQkRQVALLRLWMS-KAKLWLL 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDiNFATNYSDH 205
Cdd:PRK13540 152 DEPLVALDELSLLTIITKIQEH-RAKGGAVLLTSHQ-DLPLNKADY 195
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
2-236 |
4.27e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 92.38 E-value: 4.27e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK-PI----LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNI-ADIKTAvyaK 75
Cdd:PRK13645 7 IILDNVSYTYAKKtPFefkaLNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIpANLKKI---K 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 76 HVATLR-------QAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQVVDEAIEFLSL-EPLRKSYIDEISGGQRQMAFL 146
Cdd:PRK13645 84 EVKRLRkeiglvfQFPEYQLfQETIEKDIAFG--PVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
|
250
....*....|
gi 446504261 227 AQLNDLYELD 236
Cdd:PRK13645 242 QELLTKIEID 251
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
2-208 |
4.90e-22 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 94.62 E-value: 4.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqniaDIKTAVYAKHVATLR 81
Cdd:TIGR03719 323 IEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI--------EIGETVKLAYVDQSR 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QApgFNLRLTVEELVS------------------FGRFPYsRGvlteQDHQvvdeaieflsleplrkSYIDEISGGQRQM 143
Cdd:TIGR03719 395 DA--LDPNKTVWEEISggldiiklgkreipsrayVGRFNF-KG----SDQQ----------------KKVGQLSGGERNR 451
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 144 AFLAMTIAQQTDVLLLDEPLNNLDmkhaVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVA 208
Cdd:TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLD----VETLRALEEALLNFAGCAVVISHDRWFLDRIATHILA 512
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-207 |
5.25e-22 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 94.47 E-value: 5.25e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLnhqniaDIKTAVYAKHVATlrqapgfNLRLTVEELVsfgrfpysRG 106
Cdd:COG1245 366 GEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVDE------DLKISYKPQYISP-------DYDGTVEEFL--------RS 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 107 VLTE--QDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDE 184
Cdd:COG1245 425 ANTDdfGSSYYKTEIIKPLGLEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRFAEN 504
|
170 180
....*....|....*....|...
gi 446504261 185 QGRTVILVIHDINFATNYSDHIV 207
Cdd:COG1245 505 RGKTAMVVDHDIYLIDYISDRLM 527
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
17-214 |
6.35e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 91.76 E-value: 6.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADiKTAvyAKHVATLRQAPGFNLRL------ 90
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITH-KTK--DKYIRPVRKRIGMVFQFpesqlf 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 91 --TVEELVSFGrfPYSRGVLTEQdhqVVDEAIEFL----------SLEPLrksyidEISGGQ-RQMAFLAMtIAQQTDVL 157
Cdd:PRK13646 100 edTVEREIIFG--PKNFKMNLDE---VKNYAHRLLmdlgfsrdvmSQSPF------QMSGGQmRKIAIVSI-LAMNPDII 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK13646 168 VLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
4-214 |
8.66e-22 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 90.89 E-value: 8.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyaKHVATLRQa 83
Cdd:PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAR-----EDTRLMFQ- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 pgfNLRL----TVEELVSFGRfpysRGVLTEQDHQvvdeAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:PRK11247 89 ---DARLlpwkKVIDNVGLGL----KGQWRDAALQ----ALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLL 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK11247 158 DEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1-228 |
1.08e-21 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 92.17 E-value: 1.08e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY--GNKPI--LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIadikTAVYAKH 76
Cdd:PRK11153 1 MIELKNISKVFpqGGRTIhaLNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDL----TALSEKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQAPG-----FNL--RLTVEELVSfgrFPYS-RGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAM 148
Cdd:PRK11153 77 LRKARRQIGmifqhFNLlsSRTVFDNVA---LPLElAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIAR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:PRK11153 154 ALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
2-218 |
1.51e-21 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 88.52 E-value: 1.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG--NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVyAKHVAT 79
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKAL-SSLISV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPgfnlrltveelvsfgrfpysrgvlteqdhqvvdeaieFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03247 80 LNQRP-------------------------------------YLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLL 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINfATNYSDHIVALKNGKLHFSG 218
Cdd:cd03247 123 DEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLT-GIEHMDKILFLENGKIIMQG 178
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1-207 |
2.81e-21 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 90.50 E-value: 2.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY----GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEP---DKGEIFLNHQNIADIKTA-- 71
Cdd:COG0444 1 LLEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKLSEKel 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 72 --VYAKHVATLRQAPG--FNLRLTVEElvSFGRFPYSRGVLTEQDHQvvDEAIEFLSL----EPLR--KSYIDEISGGQR 141
Cdd:COG0444 81 rkIRGREIQMIFQDPMtsLNPVMTVGD--QIAEPLRIHGGLSKAEAR--ERAIELLERvglpDPERrlDRYPHELSGGMR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 142 QMAFLAMTIAQQTDVLLLDEPLNNLDmkhaV----QIMRALRRLCDEQGRTVILVIHDINFATNYSDHIV 207
Cdd:COG0444 157 QRVMIARALALEPKLLIADEPTTALD----VtiqaQILNLLKDLQRELGLAILFITHDLGVVAEIADRVA 222
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
2-226 |
4.88e-21 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 91.71 E-value: 4.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN---KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVA 78
Cdd:TIGR00958 479 IEFQDVSFSYPNrpdVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRQAPGFnLRLTVEELVSFGrfpysrgvLTE-QDHQVVDEAIE-----FLSLEPlrKSYIDEI-------SGGQRQMAF 145
Cdd:TIGR00958 559 LVGQEPVL-FSGSVRENIAYG--------LTDtPDEEIMAAAKAanahdFIMEFP--NGYDTEVgekgsqlSGGQKQRIA 627
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 146 LAMTIAQQTDVLLLDEPLNNLDmkhaVQIMRALRRLCDEQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVIT 225
Cdd:TIGR00958 628 IARALVRKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLME 702
|
.
gi 446504261 226 E 226
Cdd:TIGR00958 703 D 703
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-229 |
6.26e-21 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 91.24 E-value: 6.26e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQ--NIADIKTAVyAKHVA 78
Cdd:COG3845 5 ALELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKpvRIRSPRDAI-ALGIG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRQApgFNL--RLTVEELVSFGRFPYSRGVLteqDHQVVDEAIEFLS------LEPLRKsyIDEISGGQRQMAFLAMTI 150
Cdd:COG3845 84 MVHQH--FMLvpNLTVAENIVLGLEPTKGGRL---DRKAARARIRELSerygldVDPDAK--VEDLSVGEQQRVEILKAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 151 AQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQViTEAQL 229
Cdd:COG3845 157 YRGARILILDEPTAVLTPQEADELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRGKVVGTVDTAET-SEEEL 233
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
12-224 |
8.88e-21 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 90.96 E-value: 8.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 12 GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAPGFnLRLT 91
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQWDREELGRHIGYLPQDVEL-FDGT 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 92 VEELVSfgRFPysrgvlTEQDHQVVD--------EAIefLSLeplRKSY---IDE----ISGGQRQMAFLAMTIAQQTDV 156
Cdd:COG4618 422 IAENIA--RFG------DADPEKVVAaaklagvhEMI--LRL---PDGYdtrIGEggarLSGGQRQRIGLARALYGDPRL 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 157 LLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINfATNYSDHIVALKNGKLHFSGLTEQVI 224
Cdd:COG4618 489 VVLDEPNSNLDDEGEAALAAAIRALK-ARGATVVVITHRPS-LLAAVDKLLVLRDGRVQAFGPRDEVL 554
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
10-229 |
9.32e-21 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 91.06 E-value: 9.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 10 SYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIePDKGEIFLNHQNIADIKTAVYAKHVATLRQAPGFnLR 89
Cdd:PRK11174 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-PH 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 90 LTVEELVSFGRFPYSRgvltEQDHQVVDEA--IEFLSLEPLRKSY-IDE----ISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:PRK11174 437 GTLRDNVLLGNPDASD----EQLQQALENAwvSEFLPLLPQGLDTpIGDqaagLSVGQAQRLALARALLQPCQLLLLDEP 512
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 163 LNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNYsDHIVALKNGKL----HFSGLTEQVITEAQL 229
Cdd:PRK11174 513 TASLDAHSEQLVMQALNAA--SRRQTTLMVTHQLEDLAQW-DQIWVMQDGQIvqqgDYAELSQAGGLFATL 580
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
12-226 |
1.05e-20 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 90.87 E-value: 1.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 12 GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQA----PGfn 87
Cdd:TIGR01842 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDvelfPG-- 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 88 lrlTVEELVS-FGRFPYSRGVLTEQDHQVVDEAIefLSLEPLRKSYIDE----ISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:TIGR01842 407 ---TVAENIArFGENADPEKIIEAAKLAGVHELI--LRLPDGYDTVIGPggatLSGGQRQRIALARALYGDPKLVVLDEP 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 163 LNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINfATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:TIGR01842 482 NSNLDEEGEQALANAIKAL-KARGITVVVITHRPS-LLGCVDKILVLQDGRIARFGERDEVLAK 543
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-228 |
2.01e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 87.84 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 6 NINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLiePDK-------GEIFLNHQNIADIKTAV-YAKHV 77
Cdd:PRK14271 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKvsgyrysGDVLLGGRSIFNYRDVLeFRRRV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPG-FNLRLT--------VEELVSFGRFpysRGVLTEQDHQV--VDEAIEFLSLEPLRksyideISGGQRQMAFL 146
Cdd:PRK14271 104 GMLFQRPNpFPMSIMdnvlagvrAHKLVPRKEF---RGVAQARLTEVglWDAVKDRLSDSPFR------LSGGQQQLLCL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQgrTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL--TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
..
gi 446504261 227 AQ 228
Cdd:PRK14271 253 PK 254
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-207 |
2.15e-20 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 89.87 E-value: 2.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFlnhqniADIKTAVYAKHVATlrqapgfNLRLTVEELVSFGRFPYSrg 106
Cdd:PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVD------PELKISYKPQYIKP-------DYDGTVEDLLRSITDDLG-- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 107 vlteqDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQG 186
Cdd:PRK13409 430 -----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEERE 504
|
170 180
....*....|....*....|.
gi 446504261 187 RTVILVIHDINFATNYSDHIV 207
Cdd:PRK13409 505 ATALVVDHDIYMIDYISDRLM 525
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
8-218 |
2.20e-20 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 86.62 E-value: 2.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 8 NKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAPGFN 87
Cdd:cd03267 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 88 LRLTVEELVSFGRFPYsrGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLD 167
Cdd:cd03267 108 WDLPVIDSFYLLAAIY--DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446504261 168 MKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-223 |
2.29e-20 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 87.14 E-value: 2.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARL--IEPD---KGEIFLNHQNIADIKTAVYA- 74
Cdd:PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMndLNPEvtiTGSIVYNGHNIYSPRTDTVDl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 -KHVATLRQAPGfNLRLTVEELVSFG-RFpysRGVlteQDHQVVDEAIEflslEPLRKSYI-DEI-----------SGGQ 140
Cdd:PRK14239 85 rKEIGMVFQQPN-PFPMSIYENVVYGlRL---KGI---KDKQVLDEAVE----KSLKGASIwDEVkdrlhdsalglSGGQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 141 RQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQgrTVILVIHDINFATNYSDHIVALKNGKLHFSGLT 220
Cdd:PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY--TMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231
|
...
gi 446504261 221 EQV 223
Cdd:PRK14239 232 KQM 234
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-214 |
3.46e-20 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 86.09 E-value: 3.46e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA-VYAKHVAT 79
Cdd:PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkIMREAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLRLTVEELVSFGRFPYSRgvltEQDHQVVDEAIE-FLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAER----DQFQERIKWVYElFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
5-233 |
4.43e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 86.10 E-value: 4.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 5 KNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH-VATLRQA 83
Cdd:PRK10895 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRgIGYLPQE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 PGFNLRLTVEELVsFGRFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:PRK10895 87 ASIFRRLSVYDNL-MAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 164 NNLDMKHAVQIMRALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQLNDLY 233
Cdd:PRK10895 166 AGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
19-228 |
5.07e-20 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 88.59 E-value: 5.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 19 DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIePDKGEIFLNHQNIADIKtavyAKHVATLR-------QAP--GFNLR 89
Cdd:COG4172 304 GVSLTLRRGETLGLVGESGSGKSTLGLALLRLI-PSEGEIRFDGQDLDGLS----RRALRPLRrrmqvvfQDPfgSLSPR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 90 LTVEELVSFG----RFPYSRgvltEQDHQVVDEAIEFLSLEP-LRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLN 164
Cdd:COG4172 379 MTVGQIIAEGlrvhGPGLSA----AERRARVAEALEEVGLDPaARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTS 454
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 165 NLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:COG4172 455 ALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVEQGPTEQVFDAPQ 518
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-233 |
9.05e-20 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 88.04 E-value: 9.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 6 NINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLN--HQNIADIKTAVYAKhVATLRQA 83
Cdd:PRK11288 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDgqEMRFASTTAALAAG-VAIIYQE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 PGFNLRLTVEELVSFGRFPYSRGVLTEQD-HQVVDEAIEFLSLE-----PLRksyidEISGGQRQMAFLAMTIAQQTDVL 157
Cdd:PRK11288 88 LHLVPEMTVAENLYLGQLPHKGGIVNRRLlNYEAREQLEHLGVDidpdtPLK-----YLSIGQRQMVEIAKALARNARVI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKL--HFSGLT----EQVITEA---Q 228
Cdd:PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYvaTFDDMAqvdrDQLVQAMvgrE 241
|
....*
gi 446504261 229 LNDLY 233
Cdd:PRK11288 242 IGDIY 246
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-214 |
1.28e-19 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 84.45 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADI----KTAV 72
Cdd:PRK10584 6 IVEVHHLKKSVGQGehelSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMdeeaRAKL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 YAKHVATLRQApgFNLRLTVEELVSFGRFPYSRGvltEQDHQVVDEAIEFLSLEPLRKSYID---EISGGQRQMAFLAMT 149
Cdd:PRK10584 86 RAKHVGFVFQS--FMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHlpaQLSGGEQQRVALARA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQL 224
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
2-214 |
1.80e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 85.27 E-value: 1.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYG-----NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqNIAD--IKTAVYA 74
Cdd:PRK13641 3 IKFENVDYIYSpgtpmEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-----TIAGyhITPETGN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPGFNLRL--------TVEELVSFGrfPYSRGVlTEQDHQvvDEAIEFLSLEPLRKSYID----EISGGQRQ 142
Cdd:PRK13641 78 KNLKKLRKKVSLVFQFpeaqlfenTVLKDVEFG--PKNFGF-SEDEAK--EKALKWLKKVGLSEDLISkspfELSGGQMR 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 143 MAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-223 |
2.93e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 84.01 E-value: 2.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVyakhVATL 80
Cdd:COG4674 10 ILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHE----IARL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 ---R--QAPGFNLRLTVEE--LVSFGRfpySRGV-------LTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFL 146
Cdd:COG4674 86 gigRkfQKPTVFEELTVFEnlELALKG---DRGVfaslfarLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEP---LNNLDMKHAVQIMRALRrlcdeQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:COG4674 163 GMLLAQDPKLLLLDEPvagMTDAETERTAELLKSLA-----GKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSLDEV 237
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1-194 |
4.45e-19 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 82.61 E-value: 4.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAD---IKTAVYAKHv 77
Cdd:PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDpdvAEACHYLGH- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 atlrqAPGFNLRLTVEELVSF-GRFpysRGvlteQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:PRK13539 81 -----RNAMKPALTVAENLEFwAAF---LG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446504261 157 LLLDEPLNNLDmKHAVQIMRAL--RRLcdEQGRTVILVIH 194
Cdd:PRK13539 149 WILDEPTAALD-AAAVALFAELirAHL--AQGGIVIAATH 185
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
4-228 |
5.44e-19 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 83.44 E-value: 5.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIF--LNHQNIADIKTAVYAKHVATLR 81
Cdd:PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHyrMRDGQLRDLYALSEAERRRLLR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGF-------NLRLTV-------EELVSFGRFPYSRgvlteqdhqVVDEAIEFLS---LEPLRksyIDEI----SGGQ 140
Cdd:PRK11701 89 TEWGFvhqhprdGLRMQVsaggnigERLMAVGARHYGD---------IRATAGDWLErveIDAAR---IDDLpttfSGGM 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 141 RQMAFLAMTIAQQTDVLLLDEPLNNLDMkhAVQ--IMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDV--SVQarLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
250
....*....|
gi 446504261 219 LTEQVITEAQ 228
Cdd:PRK11701 235 LTDQVLDDPQ 244
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
2-214 |
7.49e-19 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 82.16 E-value: 7.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:cd03244 3 IEFKNVSLRYRPnlPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPgFNLRLTVEE-LVSFGRFPysrgvlTEQDHQVVDEA--IEFLSLEPLRK-SYIDE----ISGGQRQMAFLAMTIA 151
Cdd:cd03244 83 IPQDP-VLFSGTIRSnLDPFGEYS------DEELWQALERVglKEFVESLPGGLdTVVEEggenLSVGQRQLLCLARALL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDeqGRTVILVIHDINFATNYsDHIVALKNGKL 214
Cdd:cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIIDS-DRILVLDKGRV 215
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
27-206 |
1.69e-18 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 82.03 E-value: 1.69e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMA-RLI--------EPDKGEIfLNH------QNI------ADIKTAVYAKHVATL-RQAP 84
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILAgKLKpnlgkfddPPDWDEI-LDEfrgselQNYftklleGDVKVIVKPQYVDLIpKAVK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 85 GfnlrlTVEELvsfgrfpysrgvLTEQDHQ-VVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:cd03236 105 G-----KVGEL------------LKKKDERgKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPS 167
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 446504261 164 NNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHI 206
Cdd:cd03236 168 SYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYI 209
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
4-194 |
2.80e-18 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 80.23 E-value: 2.80e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvYAKHVATLRQA 83
Cdd:cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS-IARGLLYLGHA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 PGFNLRLTVEELVSFgrfpYSRGVLTEQdhqvVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:cd03231 82 PGIKTTLSVLENLRF----WHADHSDEQ----VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153
|
170 180 190
....*....|....*....|....*....|.
gi 446504261 164 NNLDMKHAVQIMRALRRLCdEQGRTVILVIH 194
Cdd:cd03231 154 TALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-228 |
4.27e-18 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 81.27 E-value: 4.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY---------GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA 71
Cdd:PRK10419 3 LLNVSGLSHHYahgglsgkhQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 72 ---VYAKHVATLRQ-APG-FNLRLTVEELVsfgRFPYsRGVLTEQDHQVVDEAIEFLSLEPLRKSYID----EISGGQRQ 142
Cdd:PRK10419 83 qrkAFRRDIQMVFQdSISaVNPRKTVREII---REPL-RHLLSLDKAERLARASEMLRAVDLDDSVLDkrppQLSGGQLQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 143 MAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLhfsgLTEQ 222
Cdd:PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI----VETQ 234
|
....*.
gi 446504261 223 VITEAQ 228
Cdd:PRK10419 235 PVGDKL 240
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-234 |
5.73e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 80.48 E-value: 5.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSY---GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIE------PDKGEIFLNHQNIADIKTAVYA 74
Cdd:PRK14246 10 VFNISRLYlyiNDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIFQIDAIKLR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPGFNLRLTVEELVSfgrFPY-SRGVLTEQD-HQVVDEAIEFLSL----EPLRKSYIDEISGGQRQMAFLAM 148
Cdd:PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIA---YPLkSHGIKEKREiKKIVEECLRKVGLwkevYDRLNSPASQLSGGQQQRLTIAR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQgrTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI--AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPK 244
|
....*.
gi 446504261 229 lNDLYE 234
Cdd:PRK14246 245 -NELTE 249
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
14-222 |
9.08e-18 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 82.40 E-value: 9.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 14 KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD---KGEIFLNHQNI-ADIKTAVyakhVATLRQAPGFNLR 89
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPIdAKEMRAI----SAYVQQDDLFIPT 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 90 LTVEELVSF-GRFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDE------ISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:TIGR00955 114 LTVREHLMFqAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVpgrvkgLSGGERKRLAFASELLTDPPLLFCDEP 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 163 LNNLDMKHAVQIMRALRRLCDeQGRTVILVIHDINfATNYS--DHIVALKNGKLHFSGLTEQ 222
Cdd:TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPS-SELFElfDKIILMAEGRVAYLGSPDQ 253
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
16-232 |
1.00e-17 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 79.45 E-value: 1.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQApgfNLRL--TVE 93
Cdd:cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQE---NVLFnrSIR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 94 ELVSFGRFPYSRgvlteqdHQVVDEAI-----EFLSLEPLRKSYI-----DEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:cd03252 94 DNIALADPGMSM-------ERVIEAAKlagahDFISELPEGYDTIvgeqgAGLSGGQRQRIAIARALIHNPRILIFDEAT 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 164 NNLDMKHAVQIMRALRRLCDeqGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVITE----AQLNDL 232
Cdd:cd03252 167 SALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLAEnglyAYLYQL 236
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-218 |
1.02e-17 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 82.18 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY--GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIK-------TAV 72
Cdd:PRK11160 339 LTLNNVSFTYpdQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSeaalrqaISV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 YAKHV----ATLRQapgfNLRL-----TVEELVsfgrfpysrGVLTeqdhQVvdeAIEFL--SLEPLrKSYIDE----IS 137
Cdd:PRK11160 419 VSQRVhlfsATLRD----NLLLaapnaSDEALI---------EVLQ----QV---GLEKLleDDKGL-NAWLGEggrqLS 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 138 GG-QRQMAfLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINfATNYSDHIVALKNGKLHF 216
Cdd:PRK11160 478 GGeQRRLG-IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT-GLEQFDRICVMDNGQIIE 553
|
..
gi 446504261 217 SG 218
Cdd:PRK11160 554 QG 555
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
16-229 |
1.12e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 80.66 E-value: 1.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEI----FLNHQNIADIKTAVYA-----KHVATLR----- 81
Cdd:PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELITNPyskkiKNFKELRrrvsm 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 --QAPGFNL-RLTVEELVSFGrfPYSRGVLTEQDHQvvdEAIEFLSLEPLRKSYID----EISGGQRQMAFLAMTIAQQT 154
Cdd:PRK13631 121 vfQFPEYQLfKDTIEKDIMFG--PVALGVKKSEAKK---LAKFYLNKMGLDDSYLErspfGLSGGQKRRVAIAGILAIQP 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRaLRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQL 229
Cdd:PRK13631 196 EILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHI 269
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
12-212 |
1.73e-17 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 77.67 E-value: 1.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 12 GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMAR-----LIEpdkGEIFLNHQNiadiKTAVYAKHVATLRQAPGF 86
Cdd:cd03232 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGrktagVIT---GEILINGRP----LDKNFQRSTGYVEQQDVH 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 87 NLRLTVEelvsfgrfpysrgvlteqdhqvvdEAIEFLSLepLRksyidEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNL 166
Cdd:cd03232 91 SPNLTVR------------------------EALRFSAL--LR-----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446504261 167 DMKHAVQIMRALRRLCDEqGRTVILVIHDINFAT-NYSDHIVALKNG 212
Cdd:cd03232 140 DSQAAYNIVRFLKKLADS-GQAILCTIHQPSASIfEKFDRLLLLKRG 185
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-225 |
2.99e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 78.54 E-value: 2.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD-----KGEIFLNHQNIADIKTAV--YA 74
Cdd:PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELEsevrvEGRVEFFNQNIYERRVNLnrLR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPGFnLRLTVEELVSFGRFPYSRGVLTEQDhQVVDEAIEFLSL-----EPLRKSYIDeISGGQRQMAFLAMT 149
Cdd:PRK14258 88 RQVSMVHPKPNL-FPMSVYDNVAYGVKIVGWRPKLEID-DIVESALKDADLwdeikHKIHKSALD-LSGGQQQRLCIARA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKN-----GKLHFSGLTEQVI 224
Cdd:PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKIF 244
|
.
gi 446504261 225 T 225
Cdd:PRK14258 245 N 245
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1-215 |
3.73e-17 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 77.61 E-value: 3.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTavyaKHVAT 79
Cdd:PRK10908 1 MIRFEHVSKAYlGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKN----REVPF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLRltvEELVSFGRFPYSR--------GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:PRK10908 77 LRRQIGMIFQ---DHHLLMDRTVYDNvaipliiaGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLH 215
Cdd:PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-223 |
3.86e-17 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 80.21 E-value: 3.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH-VAT 79
Cdd:PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLgIGI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLRLTVEELVSFGRFPYSR--GVlteqdhQVVD------EAIEFLSLEPLRKS---YIDEISGGQRQMAFLAM 148
Cdd:PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKvcGV------NIIDwremrvRAAMMLLRVGLKVDldeKVANLSISHKQMLEIAK 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 149 TIAQQTDVLLLDEP---LNNLDMKHAVQIMRALRRlcdeQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:PRK09700 159 TLMLDAKVIIMDEPtssLTNKEVDYLFLIMNQLRK----EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
17-242 |
4.83e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 78.21 E-value: 4.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiktavyAKHVATLRQAPGFNLR------- 89
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLT-------AENVWNLRRKIGMVFQnpdnqfv 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 90 -LTVEELVSFGRfpYSRGVLTEQDHQVVDEAI------EFLSLEPLRksyideISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:PRK13642 96 gATVEDDVAFGM--ENQGIPREEMIKRVDEALlavnmlDFKTREPAR------LSGGQKQRVAVAGIIALRPEIIILDES 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 163 LNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVITEAQlnDLYELDFEITYS 242
Cdd:PRK13642 168 TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSE--DMVEIGLDVPFS 244
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
4-194 |
5.25e-17 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 76.63 E-value: 5.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADiKTAVYAKHVATLRQA 83
Cdd:TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAE-QRDEPHENILYLGHL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 PGFNLRLTVEELVSFgrfpYSRGVLTEQdhQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:TIGR01189 82 PGLKPELSALENLHF----WAAIHGGAQ--RTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPT 155
|
170 180 190
....*....|....*....|....*....|.
gi 446504261 164 NNLDMKHAVQIMRALRRLCdEQGRTVILVIH 194
Cdd:TIGR01189 156 TALDKAGVALLAGLLRAHL-ARGGIVLLTTH 185
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
19-223 |
5.29e-17 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 79.15 E-value: 5.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 19 DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYakhVATLRQAPGF---NLRLtveel 95
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIC---LPPEKRRIGYvfqDARL----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 96 vsfgrFP-YS-RGVLT----EQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMK 169
Cdd:PRK11144 88 -----FPhYKvRGNLRygmaKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446504261 170 HAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:PRK11144 163 RKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
2-218 |
6.09e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 77.90 E-value: 6.09e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMAR---LIEPDK--GEIFLNHQNI--ADIKTAVYA 74
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRlndLIPGFRveGKVTFHGKNLyaPDVDPVEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 KHVATLRQAPGfNLRLTVEELVSFG-RFPYSRGVLTEqdhqVVDEAIEFLSL-----EPLRKSYIdEISGGQRQMAFLAM 148
Cdd:PRK14243 91 RRIGMVFQKPN-PFPKSIYDNIAYGaRINGYKGDMDE----LVERSLRQAALwdevkDKLKQSGL-SLSGGQQQRLCIAR 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNYSDhIVALKNGKLHFSG 218
Cdd:PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQYTIIIVTHNMQQAARVSD-MTAFFNVELTEGG 231
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-223 |
6.47e-17 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 77.46 E-value: 6.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQ-NIADIKTAVYAKhvAT 79
Cdd:PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKlRIGYVPQKLYLD--TT 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 lrqapgfnLRLTVEelvsfgRFPYSRGVLTEQDhqvVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:PRK09544 82 --------LPLTVN------RFLRLRPGTKKED---ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALkNGKLHFSGLTEQV 223
Cdd:PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTPEVV 207
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
13-227 |
8.61e-17 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 79.37 E-value: 8.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 13 NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAPgFNLRLTV 92
Cdd:PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP-FLFSDTV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EELVSFGRfPysrGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEI-------SGGQRQMAFLAMTIAQQTDVLLLDEPLNN 165
Cdd:PRK10789 406 ANNIALGR-P---DATQQEIEHVARLASVHDDILRLPQGYDTEVgergvmlSGGQKQRISIARALLLNAEILILDDALSA 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 166 LDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNySDHIVALKNGKLHFSGLTEQVITEA 227
Cdd:PRK10789 482 VDGRTEHQILHNLRQW--GEGRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
2-208 |
1.03e-16 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 79.01 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFL-----------NHQNIADIKt 70
Cdd:PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIgetvklayvdqSRDALDPNK- 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 71 avyakhvatlrqapgfnlrlTVEELVS------------------FGRFPYsRGvlteQDHQvvdeaieflsleplrkSY 132
Cdd:PRK11819 404 --------------------TVWEEISggldiikvgnreipsrayVGRFNF-KG----GDQQ----------------KK 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 133 IDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDmkhaVQIMRALRRLCDEQGRTVILVIHDINF----ATnysdHIVA 208
Cdd:PRK11819 443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD----VETLRALEEALLEFPGCAVVISHDRWFldriAT----HILA 514
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
27-196 |
1.30e-16 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 78.67 E-value: 1.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLI---------EPDKGEIfLNH----------QNIAD--IKTAVYAKHVATLRQApg 85
Cdd:COG1245 99 GKVTGILGPNGIGKSTALKILSGELkpnlgdydeEPSWDEV-LKRfrgtelqdyfKKLANgeIKVAHKPQYVDLIPKV-- 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 86 fnLRLTVEELvsfgrfpysrgvLTEQD-HQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLN 164
Cdd:COG1245 176 --FKGTVREL------------LEKVDeRGKLDELAEKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPSS 241
|
170 180 190
....*....|....*....|....*....|..
gi 446504261 165 NLDMKHAVQIMRALRRLCDEqGRTVILVIHDI 196
Cdd:COG1245 242 YLDIYQRLNVARLIRELAEE-GKYVLVVEHDL 272
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
14-214 |
1.43e-16 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 76.66 E-value: 1.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 14 KPILTDVNVEFPTGQVTSLIGPNGAGKS----TLLMMMARLIEPDKGEIFLNHQNIAdiKTAVYAKHVATLRQAP--GFN 87
Cdd:PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSltcaAALGILPAGVRQTAGRVLLDGKPVA--PCALRGRKIATIMQNPrsAFN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 88 LRLT-----VEELVSFGRfpysrgvltEQDHQVVDEAIEFLSLE-PLR--KSYIDEISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:PRK10418 94 PLHTmhthaRETCLALGK---------PADDATLTAALEAVGLEnAARvlKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK10418 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-218 |
2.04e-16 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 78.52 E-value: 2.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSY--GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQniaDIKTAVYAKHvATLR 81
Cdd:TIGR01257 931 VKNLVKIFepSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGK---DIETNLDAVR-QSLG 1006
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNL---RLTVEELVSFgrFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:TIGR01257 1007 MCPQHNIlfhHLTVAEHILF--YAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 159 LDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSG 218
Cdd:TIGR01257 1085 LDEPTSGVDPYSRRSIWDLLLKY--RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-214 |
3.24e-16 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 75.24 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDV--NVEFPT--GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKh 76
Cdd:PRK11629 5 LLQCDNLCKRYQEGSVQTDVlhNVSFSIgeGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 vatLRQA------------PGFNLRLTVEELVSFGrfpysrGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMA 144
Cdd:PRK11629 84 ---LRNQklgfiyqfhhllPDFTALENVAMPLLIG------KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 145 FLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHiVALKNGKL 214
Cdd:PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQ-LEMRDGRL 223
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-213 |
4.58e-16 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 77.28 E-value: 4.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 3 HVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNhqniADIKtavyakhVATLR 81
Cdd:TIGR03719 6 TMNRVSKVVpPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFNGEARPQ----PGIK-------VGYLP 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFG---------RF-----PYS------RGVLTEQ---------------DHQvVDEAIEFLSLE 126
Cdd:TIGR03719 75 QEPQLDPTKTVRENVEEGvaeikdaldRFneisaKYAepdadfDKLAAEQaelqeiidaadawdlDSQ-LEIAMDALRCP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 127 PlRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcdeQGrTVILVIHDINFATNYSDHI 206
Cdd:TIGR03719 154 P-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLERHLQEY---PG-TVVAVTHDRYFLDNVAGWI 228
|
....*..
gi 446504261 207 VALKNGK 213
Cdd:TIGR03719 229 LELDRGR 235
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
2-214 |
5.65e-16 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 76.98 E-value: 5.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY--GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:PRK11176 342 IEFRNVTFTYpgKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQapgfNLRL---TVEELVSFGRFP-YSRgvltEQDHQV--VDEAIEFLS-LEPLRKSYIDE----ISGGQRQMAFLAM 148
Cdd:PRK11176 422 VSQ----NVHLfndTIANNIAYARTEqYSR----EQIEEAarMAYAMDFINkMDNGLDTVIGEngvlLSGGQRQRIAIAR 493
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAHRLSTIEK-ADEILVVEDGEI 556
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
14-226 |
9.28e-16 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 73.84 E-value: 9.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 14 KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIE--PDKGEIFLNHQNIAdiktavyakhvatlRQAPGfnlrlt 91
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKgtPVAGCVDVPDNQFG--------------REASL------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 92 VEELVSFGRFpysrgvlteqdhqvvDEAIEFLSLEPL------RKSYiDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNN 165
Cdd:COG2401 103 IDAIGRKGDF---------------KDAVELLNAVGLsdavlwLRRF-KELSTGQKFRFRLALLLAERPKLLVIDEFCSH 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 166 LDMKHAVQIMRALRRLCDEQGRTVILvihdinfATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:COG2401 167 LDRQTAKRVARNLQKLARRAGITLVV-------ATHHYDVIDDLQPDLLIFVGYGGVPEEK 220
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
19-197 |
1.17e-15 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 75.15 E-value: 1.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 19 DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAV---YAKHVATLRQAP--GFNLRLTVE 93
Cdd:COG4608 36 GVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLSGRElrpLRRRMQMVFQDPyaSLNPRMTVG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 94 ELVSFGrfPYSRGVLTEQDHQvvDEAIEFLSLEPLRKSYID----EISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMK 169
Cdd:COG4608 116 DIIAEP--LRIHGLASKAERR--ERVAELLELVGLRPEHADryphEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVS 191
|
170 180
....*....|....*....|....*...
gi 446504261 170 HAVQIMRALRRLCDEQGRTVILVIHDIN 197
Cdd:COG4608 192 IQAQVLNLLEDLQDELGLTYLFISHDLS 219
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
6-218 |
1.23e-15 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 75.77 E-value: 1.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 6 NINKSYGNK-PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAP 84
Cdd:PRK13657 339 DVSFSYDNSrQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 85 G-FNlRlTVEELVSFGRfpysrgvLTEQDHQVVD-----EAIEFLSLEPLR-KSYIDE----ISGGQRQMAFLAMTIAQQ 153
Cdd:PRK13657 419 GlFN-R-SIEDNIRVGR-------PDATDEEMRAaaeraQAHDFIERKPDGyDTVVGErgrqLSGGERQRLAIARALLKD 489
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 154 TDVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNySDHIVALKNGKLHFSG 218
Cdd:PRK13657 490 PPILILDEATSALDVETEAKVKAALDEL--MKGRTTFIIAHRLSTVRN-ADRILVFDNGRVVESG 551
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
12-228 |
1.53e-15 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 75.51 E-value: 1.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 12 GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIePDKGEIFLNHQNIADI---KTAVYAKHVATLRQAP--GF 86
Cdd:PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLnrrQLLPVRHRIQVVFQDPnsSL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 87 NLRLTVEELVSFGRFPYSRGVLTEQDHQVVDEAIEFLSLEP-LRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNN 165
Cdd:PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPeTRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 166 LDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
2-213 |
1.84e-15 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 75.52 E-value: 1.84e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN-KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATL 80
Cdd:PRK10790 341 IDIDNVSFAYRDdNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFnLRLTVEELVSFGRfpysrgvltEQDHQVVDEAIEFLSLEPLRKSYIDEI-----------SGGQRQMAFLAMT 149
Cdd:PRK10790 421 QQDPVV-LADTFLANVTLGR---------DISEEQVWQALETVQLAELARSLPDGLytplgeqgnnlSVGQKQLLALARV 490
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNySDHIVALKNGK 213
Cdd:PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAV--REHTTLVVIAHRLSTIVE-ADTILVLHRGQ 551
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
4-194 |
2.33e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 72.17 E-value: 2.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARL--IEPDKGEIFLNHQNIADiktavyakhvatlr 81
Cdd:cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHpkYEVTEGEILFKGEDITD-------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 qapgfnlrLTVEELVSFGRFpysrgvLTEQDhqvvDEAIEFLSLEP-LRksYIDE-ISGGQRQMAFLAMTIAQQTDVLLL 159
Cdd:cd03217 69 --------LPPEERARLGIF------LAFQY----PPEIPGVKNADfLR--YVNEgFSGGEKKRNEILQLLLLEPDLAIL 128
|
170 180 190
....*....|....*....|....*....|....*
gi 446504261 160 DEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIH 194
Cdd:cd03217 129 DEPDSGLDIDALRLVAEVINKLREE-GKSVLIITH 162
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
4-218 |
2.76e-15 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 74.93 E-value: 2.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQniADIktAVYAK-Hvatlrq 82
Cdd:PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANI--GYYAQdH------ 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 APGFNLRLTVEELVSFGRFPysrgvltEQDHQVVDEAIEFL--SLEPLRKSyIDEISGG-QRQMAF--LAMtiaQQTDVL 157
Cdd:PRK15064 392 AYDFENDLTLFDWMSQWRQE-------GDDEQAVRGTLGRLlfSQDDIKKS-VKVLSGGeKGRMLFgkLMM---QKPNVL 460
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLcdeQGrTVILVIHDINFATNYSDHIVALKNGKL-HFSG 218
Cdd:PRK15064 461 VMDEPTNHMDMESIESLNMALEKY---EG-TLIFVSHDREFVSSLATRIIEITPDGVvDFSG 518
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
2-213 |
3.48e-15 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 74.47 E-value: 3.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY-GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTavyakhvATL 80
Cdd:COG5265 358 VRFENVSFGYdPERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQ-------ASL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPG--------FNlrLTVEELVSFGRfpysrgvlTEQDHQVVDEAIeflsleplRKSYIDE----------------- 135
Cdd:COG5265 431 RAAIGivpqdtvlFN--DTIAYNIAYGR--------PDASEEEVEAAA--------RAAQIHDfieslpdgydtrvgerg 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 136 --ISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcdEQGRTVILVIHDINFATNySDHIVALKNGK 213
Cdd:COG5265 493 lkLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREV--ARGRTTLVIAHRLSTIVD-ADEILVLEAGR 569
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1-238 |
3.82e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 73.58 E-value: 3.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-------GNKPILT--------------DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIF 59
Cdd:COG4586 1 IIEVENLSKTYrvyekepGLKGALKglfrreyreveavdDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 60 LNHQNIADIKTAvYAKHVATLrqapgFNLR------LTVEElvSFG--RFPYSrgvLTEQDH-QVVDEAIEFLSLEPLRK 130
Cdd:COG4586 81 VLGYVPFKRRKE-FARRIGVV-----FGQRsqlwwdLPAID--SFRllKAIYR---IPDAEYkKRLDELVELLDLGELLD 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 131 SYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLD--MKHAVQimRALRRLCDEQGRTVILVIHDINFATNYSDHIVA 208
Cdd:COG4586 150 TPVRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDvvSKEAIR--EFLKEYNRERGTTILLTSHDMDDIEALCDRVIV 227
|
250 260 270
....*....|....*....|....*....|
gi 446504261 209 LKNGKLHFSGLTEQVITEAQLNDLYELDFE 238
Cdd:COG4586 228 IDHGRIIYDGSLEELKERFGPYKTIVLELA 257
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-214 |
4.85e-15 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 74.38 E-value: 4.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY--GNKPI--LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAkh 76
Cdd:PRK10535 4 LLELKDIRRSYpsGEEQVevLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 vATLRQAPGFNLR-------LTVEELVsfgRFP--YSrGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLA 147
Cdd:PRK10535 82 -QLRREHFGFIFQryhllshLTAAQNV---EVPavYA-GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 148 MTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIHDINFAtNYSDHIVALKNGKL 214
Cdd:PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVA-AQAERVIEIRDGEI 221
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
2-214 |
7.15e-15 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 71.29 E-value: 7.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK--PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:cd03369 7 IEVENLSVRYAPDlpPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGF---NLRLTVEelvsfgrfPYsrgvlteqDHQVVDEAIEFLSLeplrKSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:cd03369 87 IPQDPTLfsgTIRSNLD--------PF--------DEYSDEEIYGALRV----SEGGLNLSQGQRQLLCLARALLKRPRV 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 157 LLLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIHDINFATNYsDHIVALKNGKL 214
Cdd:cd03369 147 LVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLRTIIDY-DKILVMDAGEV 201
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1-226 |
3.23e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 71.76 E-value: 3.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-----GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEI-FLNHQNIADIKTavya 74
Cdd:TIGR03269 279 IIKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVnVRVGDEWVDMTK---- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 75 khvatlrqaPGFNLRLTVEELVSF-----GRFPYSR--GVLTEQ------DHQVVDEAIEFLSL--------EPLRKSYI 133
Cdd:TIGR03269 355 ---------PGPDGRGRAKRYIGIlhqeyDLYPHRTvlDNLTEAiglelpDELARMKAVITLKMvgfdeekaEEILDKYP 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 134 DEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:TIGR03269 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGK 505
|
250
....*....|...
gi 446504261 214 LHFSGLTEQVITE 226
Cdd:TIGR03269 506 IVKIGDPEEIVEE 518
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-212 |
3.33e-14 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 69.77 E-value: 3.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY-----GNK--PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQN-IADIKTAV 72
Cdd:COG4778 4 LLEVENLSKTFtlhlqGGKrlPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVRHDGgWVDLAQAS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 yAKHVATLRQA------------PgfnlRLTVEELVSFGRFpySRGVLTEQDHQVVDEAIEFLSL-EPLRKSYIDEISGG 139
Cdd:COG4778 84 -PREILALRRRtigyvsqflrviP----RVSALDVVAEPLL--ERGVDREEARARARELLARLNLpERLWDLPPATFSGG 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 140 QRQMAFLAMTIAQQTDVLLLDEPLNNLDMKH---AVQIMRALRRlcdeQGRTVILVIHDINFATNYSDHIVALKNG 212
Cdd:COG4778 157 EQQRVNIARGFIADPPLLLLDEPTASLDAANravVVELIEEAKA----RGTAIIGIFHDEEVREAVADRVVDVTPF 228
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
27-196 |
3.59e-14 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 71.76 E-value: 3.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPD-----------------KGEIFLNH-QNIAD--IKTAVYAKHVATLRQApgf 86
Cdd:PRK13409 99 GKVTGILGPNGIGKTTAVKILSGELIPNlgdyeeepswdevlkrfRGTELQNYfKKLYNgeIKVVHKPQYVDLIPKV--- 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 87 nLRLTVEELvsfgrfpysrgvLTEQD-HQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNN 165
Cdd:PRK13409 176 -FKGKVREL------------LKKVDeRGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSY 242
|
170 180 190
....*....|....*....|....*....|.
gi 446504261 166 LDMKHAVQIMRALRRLCdeQGRTVILVIHDI 196
Cdd:PRK13409 243 LDIRQRLNVARLIRELA--EGKYVLVVEHDL 271
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
14-218 |
6.04e-14 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 71.35 E-value: 6.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 14 KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIfLNHQNIAdiktavYAKHVATLRQApgfnlrlTVE 93
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIA------YVPQQAWIMNA-------TVR 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 94 ELVSFgrfpysrgvLTEQDHQVVDEAIEFLSLEP----LRKSYIDEI-------SGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:PTZ00243 739 GNILF---------FDEEDAARLADAVRVSQLEAdlaqLGGGLETEIgekgvnlSGGQKARVSLARAVYANRDVYLLDDP 809
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 163 LNNLDMKHAVQIMRA--LRRLcdeQGRTVILVIHDINFATnYSDHIVALKNGKLHFSG 218
Cdd:PTZ00243 810 LSALDAHVGERVVEEcfLGAL---AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSG 863
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
27-232 |
7.57e-14 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 69.43 E-value: 7.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAP--GFNLRLTVEELVSFgRFPYS 104
Cdd:PRK15112 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPstSLNPRQRISQILDF-PLRLN 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 105 RGVLTEQDHQVVDEAIEFLSLEPLRKSYIDE-ISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCD 183
Cdd:PRK15112 118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHmLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE 197
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 446504261 184 EQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITeAQLNDL 232
Cdd:PRK15112 198 KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA-SPLHEL 245
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
5-213 |
1.21e-13 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 69.76 E-value: 1.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 5 KNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIaDIKTAVYA--KHVATLRQ 82
Cdd:PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI-DFKSSKEAleNGISMVHQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 83 APGFNLRLTVEELVSFGRFPySRGVLTEQDHQVVD-EAI-EFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:PRK10982 81 ELNLVLQRSVMDNMWLGRYP-TKGMFVDQDKMYRDtKAIfDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 161 EPLNNLDMK---HAVQIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:PRK10982 160 EPTSSLTEKevnHLFTIIRKLK----ERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-224 |
1.59e-13 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 69.83 E-value: 1.59e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARL--IEPDKGEIFLNHQ---------------- 63
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIYHVAlcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 64 -----------------NIADIKTAVYAKHVATLRQAPgFNL----RLTVEELVSFGRFPYSrgvlteqDHQVVDEAIEF 122
Cdd:TIGR03269 81 pcpvcggtlepeevdfwNLSDKLRRRIRKRIAIMLQRT-FALygddTVLDNVLEALEEIGYE-------GKEAVGRAVDL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 123 LSLEPL--RKSYI-DEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFA 199
Cdd:TIGR03269 153 IEMVQLshRITHIaRDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
|
250 260
....*....|....*....|....*
gi 446504261 200 TNYSDHIVALKNGKLHFSGLTEQVI 224
Cdd:TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVV 257
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
10-214 |
2.32e-13 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 69.21 E-value: 2.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 10 SYGNKPIL--TDVNVEfpTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqNIA-DIKtavyakhVATLRQAPGF 86
Cdd:PRK11147 12 SFSDAPLLdnAELHIE--DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI-----IYEqDLI-------VARLQQDPPR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 87 NLRLTVEELVSFG---------RFPY-SRGVLTEQ---------------DHQ-------VVDEAIEFLSLEPLRKsyID 134
Cdd:PRK11147 78 NVEGTVYDFVAEGieeqaeylkRYHDiSHLVETDPseknlnelaklqeqlDHHnlwqlenRINEVLAQLGLDPDAA--LS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 135 EISGG-QRQMAfLAMTIAQQTDVLLLDEPLNNLDMKhAVQIMRALrrLCDEQGrTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:PRK11147 156 SLSGGwLRKAA-LGRALVSNPDVLLLDEPTNHLDIE-TIEWLEGF--LKTFQG-SIIFISHDRSFIRNMATRIVDLDRGK 230
|
.
gi 446504261 214 L 214
Cdd:PRK11147 231 L 231
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1-194 |
4.37e-13 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 65.98 E-value: 4.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvYAKHVATL 80
Cdd:PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE-YHQDLLYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFgrfpYSR--GVLTEQDHQVVDEAIEFLSLEPLRKSYideISGGQRQMAFLAMTIAQQTDVLL 158
Cdd:PRK13538 80 GHQPGIKTELTALENLRF----YQRlhGPGDDEALWEALAQVGLAGFEDVPVRQ---LSAGQQRRVALARLWLTRAPLWI 152
|
170 180 190
....*....|....*....|....*....|....*..
gi 446504261 159 LDEPLNNLDmKHAV-QIMRALRRLCdEQGRTVILVIH 194
Cdd:PRK13538 153 LDEPFTAID-KQGVaRLEALLAQHA-EQGGMVILTTH 187
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
4-218 |
8.13e-13 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 65.86 E-value: 8.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLlmmmARLI------EPDKGEIFLNHQNIADIKTAVYAKH- 76
Cdd:COG0396 3 IKNLHVSVEGKEILKGVNLTIKPGEVHAIMGPNGSGKSTL----AKVLmghpkyEVTSGSILLDGEDILELSPDERARAg 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 ---------------VATLrqapgfnLRLTV----EELVSFGRFpysrgvlteqdHQVVDEAIEFLSLEP-LRKSYIDE- 135
Cdd:COG0396 79 iflafqypveipgvsVSNF-------LRTALnarrGEELSAREF-----------LKLLKEKMKELGLDEdFLDRYVNEg 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 136 ISGGQR------QMAFLamtiaqQTDVLLLDEPLNNLD---MKHAVQIMRALRrlcdEQGRTVILVIHdinfatnYS--- 203
Cdd:COG0396 141 FSGGEKkrneilQMLLL------EPKLAILDETDSGLDidaLRIVAEGVNKLR----SPDRGILIITH-------YQril 203
|
250 260
....*....|....*....|
gi 446504261 204 -----DHIVALKNGKLHFSG 218
Cdd:COG0396 204 dyikpDFVHVLVDGRIVKSG 223
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
3-195 |
9.27e-13 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 67.45 E-value: 9.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 3 HVKNINKSYG-NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNhqniADIKtavyakhVATLR 81
Cdd:PRK11819 8 TMNRVSKVVPpKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA----PGIK-------VGYLP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSFG---------RF-----------PYSRGVLTEQ---------------DHQvVDEAIEFLSLE 126
Cdd:PRK11819 77 QEPQLDPEKTVRENVEEGvaevkaaldRFneiyaayaepdADFDALAAEQgelqeiidaadawdlDSQ-LEIAMDALRCP 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 127 PlRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKhAVQIMRalRRLCDEQGrTVILVIHD 195
Cdd:PRK11819 156 P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE-SVAWLE--QFLHDYPG-TVVAVTHD 219
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
118-228 |
1.02e-12 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 67.02 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 118 EAIEFLSL----EPLR--KSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVIL 191
Cdd:COG4172 133 RALELLERvgipDPERrlDAYPHQLSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLL 212
|
90 100 110
....*....|....*....|....*....|....*..
gi 446504261 192 VIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEAQ 228
Cdd:COG4172 213 ITHDLGVVRRFADRVAVMRQGEIVEQGPTAELFAAPQ 249
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-227 |
1.03e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 67.38 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA-VYAKHVAT 79
Cdd:PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAkAHQLGIYL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLRLTVEELVSFGrFPYSRGvlteqDHQVVDEAIEFL--SLEPLRKSYIDEISggQRQMAFLAMTIAQQTDVL 157
Cdd:PRK15439 91 VPQEPLLFPNLSVKENILFG-LPKRQA-----SMQKMKQLLAALgcQLDLDSSAGSLEVA--DRQIVEILRGLMRDSRIL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITEA 227
Cdd:PRK15439 163 ILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
16-194 |
1.25e-12 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 67.18 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMAR-----LIEpdkgeiflnhqniADIKTAVYAKHVATLRQAPGF---- 86
Cdd:PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGrktggYIE-------------GDIRISGFPKKQETFARISGYceqn 961
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 87 ---NLRLTVEELV---SFGRFPysRGVLTEQDHQVVDEAIEFLSLEPLRKSY-----IDEISGGQRQMAFLAMTIAQQTD 155
Cdd:PLN03140 962 dihSPQVTVRESLiysAFLRLP--KEVSKEEKMMFVDEVMELVELDNLKDAIvglpgVTGLSTEQRKRLTIAVELVANPS 1039
|
170 180 190
....*....|....*....|....*....|....*....
gi 446504261 156 VLLLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIH 194
Cdd:PLN03140 1040 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIH 1077
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
2-229 |
1.32e-12 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 67.31 E-value: 1.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNK---PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMArliepdkGEIFLNHQNIADIKTAV-YAKHV 77
Cdd:PLN03232 615 ISIKNGYFSWDSKtskPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML-------GELSHAETSSVVIRGSVaYVPQV 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQApgfnlrlTVEELVSFG-RFP---YSRGV-LTEQDHQvvdeaiefLSLEPLR-KSYIDE----ISGGQRQMAFLA 147
Cdd:PLN03232 688 SWIFNA-------TVRENILFGsDFEserYWRAIdVTALQHD--------LDLLPGRdLTEIGErgvnISGGQKQRVSMA 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 148 MTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRlcDE-QGRTVILVIHDINFATnYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK--DElKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKS 829
|
...
gi 446504261 227 AQL 229
Cdd:PLN03232 830 GSL 832
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
1-231 |
2.30e-12 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 66.35 E-value: 2.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHqniaDIKTAVYAKH-VAT 79
Cdd:PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK----GIKLGYFAQHqLEF 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LR--QAPGFNL-RLTVEELVS-----FGRFPYsrgvlteQDHQVVDEAIEFlsleplrksyideiSGGQRQMAFLAMTIA 151
Cdd:PRK10636 388 LRadESPLQHLaRLAPQELEQklrdyLGGFGF-------QGDKVTEETRRF--------------SGGEKARLVLALIVW 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 152 QQTDVLLLDEPLNNLDMKhavqiMR-ALRR-LCDEQGRTVIlVIHDINFATNYSDHIVALKNGKLH-FSG--------LT 220
Cdd:PRK10636 447 QRPNLLLLDEPTNHLDLD-----MRqALTEaLIDFEGALVV-VSHDRHLLRSTTDDLYLVHDGKVEpFDGdledyqqwLS 520
|
250
....*....|.
gi 446504261 221 EQVITEAQLND 231
Cdd:PRK10636 521 DVQKQENQTDE 531
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
2-218 |
2.63e-12 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 64.59 E-value: 2.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMA--RLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAghPSYEVTSGTILFKGQDLLELEPDERARAGLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LR-QAP----GFNLRLTVEELVSFGRFPYSRGVLTEQD-HQVVDEAIEFLSL-EPLRKSYIDE-ISGGQR------QMAF 145
Cdd:TIGR01978 81 LAfQYPeeipGVSNLEFLRSALNARRSARGEEPLDLLDfEKLLKEKLALLDMdEEFLNRSVNEgFSGGEKkrneilQMAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 146 LamtiaqQTDVLLLDEPLNNLDMKhavqimrALRRLCD------EQGRTVILVIHDINFAtNY--SDHIVALKNGKLHFS 217
Cdd:TIGR01978 161 L------EPKLAILDEIDSGLDID-------ALKIVAEginrlrEPDRSFLIITHYQRLL-NYikPDYVHVLLDGRIVKS 226
|
.
gi 446504261 218 G 218
Cdd:TIGR01978 227 G 227
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
10-168 |
6.00e-12 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 63.33 E-value: 6.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 10 SYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLN-HQNiadiKTAVYAKHVATLRQAPGFNL 88
Cdd:PRK13543 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDgKTA----TRGDRSRFMAYLGHLPGLKA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 89 RLTVEELVSF-----GRFPysrgvlteqdHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:PRK13543 96 DLSTLENLHFlcglhGRRA----------KQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165
|
....*
gi 446504261 164 NNLDM 168
Cdd:PRK13543 166 ANLDL 170
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
4-201 |
6.52e-12 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 64.97 E-value: 6.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQniadIKTAVYAKHVATLrqa 83
Cdd:PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTK----LEVAYFDQHRAEL--- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 pgfNLRLTVEELVSFGRFPY-----SRGVLTE-QDhqvvdeaieFLsLEPLR-KSYIDEISGGQRQMAFLAMTIAQQTDV 156
Cdd:PRK11147 395 ---DPEKTVMDNLAEGKQEVmvngrPRHVLGYlQD---------FL-FHPKRaMTPVKALSGGERNRLLLARLFLKPSNL 461
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446504261 157 LLLDEPLNNLDmkhaVQIMRALRRLCDE-QGrTVILVIHDINFATN 201
Cdd:PRK11147 462 LILDEPTNDLD----VETLELLEELLDSyQG-TVLLVSHDRQFVDN 502
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
130-226 |
7.67e-12 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 64.16 E-value: 7.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 130 KSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVAL 209
Cdd:COG4170 153 NSYPHELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVL 232
|
90
....*....|....*..
gi 446504261 210 KNGKLHFSGLTEQVITE 226
Cdd:COG4170 233 YCGQTVESGPTEQILKS 249
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
20-214 |
9.30e-12 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 64.22 E-value: 9.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 20 VNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLrqAPGFNLrltveelvsFG 99
Cdd:PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV--FTDFHL---------FD 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 100 RFPYSRGvlTEQDHQVVDEAIEFL------SLEPLRKSYIDeISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQ 173
Cdd:PRK10522 411 QLLGPEG--KPANPALVEKWLERLkmahklELEDGRISNLK-LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRE 487
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446504261 174 IMRALRRLCDEQGRTVILVIHDinfaTNYSDH---IVALKNGKL 214
Cdd:PRK10522 488 FYQVLLPLLQEMGKTIFAISHD----DHYFIHadrLLEMRNGQL 527
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-211 |
1.38e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 64.28 E-value: 1.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKP---ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLN-HQNIADIKTAVYAKHV 77
Cdd:PTZ00265 383 IQFKNVRFHYDTRKdveIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINdSHNLKDINLKWWRSKI 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAP-------------------------------------------------GFNLRLTVEELVSFGRFPYSRGVL 108
Cdd:PTZ00265 463 GVVSQDPllfsnsiknnikyslyslkdlealsnyynedgndsqenknkrnscrakcAGDLNDMSNTTDSNELIEMRKNYQ 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 109 TEQDHQVVDEAI-----EFLSLEP-----LRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRAL 178
Cdd:PTZ00265 543 TIKDSEVVDVSKkvlihDFVSALPdkyetLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI 622
|
250 260 270
....*....|....*....|....*....|...
gi 446504261 179 RRLCDEQGRTVILVIHDINfATNYSDHIVALKN 211
Cdd:PTZ00265 623 NNLKGNENRITIIIAHRLS-TIRYANTIFVLSN 654
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
13-167 |
1.54e-11 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 61.81 E-value: 1.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 13 NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAvYAKHVAtlrQAPGFNLRLTV 92
Cdd:PRK13541 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKP-YCTYIG---HNLGLKLEMTV 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 93 EELVSFGRFPYSRGvlteqdhQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLD 167
Cdd:PRK13541 88 FENLKFWSEIYNSA-------ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
12-210 |
1.66e-11 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 60.84 E-value: 1.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 12 GNKPILTDVN-VEFPTGQVTSLIGPNGAGKSTLlmmmarliepdkgeiflnhqnIADIKTAVYAKHVATLRqapgfnlrl 90
Cdd:cd03227 5 GRFPSYFVPNdVTFGEGSLTIITGPNGSGKSTI---------------------LDAIGLALGGAQSATRR--------- 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 91 tveelvsfgrfpysrGVLTEQDHQVVDEAIEFLSLeplrksyIDEISGGQRQMAFLAMTIA----QQTDVLLLDEPLNNL 166
Cdd:cd03227 55 ---------------RSGVKAGCIVAAVSAELIFT-------RLQLSGGEKELSALALILAlaslKPRPLYILDEIDRGL 112
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446504261 167 DMKHAVQIMRALRRLCDeQGRTVILVIHDINFATNySDHIVALK 210
Cdd:cd03227 113 DPRDGQALAEAILEHLV-KGAQVIVITHLPELAEL-ADKLIHIK 154
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
2-167 |
1.74e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 63.50 E-value: 1.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLmmmaRLIEPDKGEIFLNH-----------QNIADIKt 70
Cdd:PRK10938 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL----SLITGDHPQGYSNDltlfgrrrgsgETIWDIK- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 71 avyaKHVATLRQAPGFNLRL--TVEELVSFGRFPySRGV---LTEQDHQVVDEAIEFLSL-EPLRKSYIDEISGGQRQMA 144
Cdd:PRK10938 336 ----KHIGYVSSSLHLDYRVstSVRNVILSGFFD-SIGIyqaVSDRQQKLAQQWLDILGIdKRTADAPFHSLSWGQQRLA 410
|
170 180
....*....|....*....|...
gi 446504261 145 FLAMTIAQQTDVLLLDEPLNNLD 167
Cdd:PRK10938 411 LIVRALVKHPTLLILDEPLQGLD 433
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
9-207 |
1.90e-11 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 61.05 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 9 KSYGNKPILTDVNvEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLnhqniaDIKTAVYakhvatlrqapgfnl 88
Cdd:cd03222 8 KRYGVFFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEW------DGITPVY--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 89 rltveelvsfgrfpysrgvlteqdhqvvdeaieflsleplRKSYIDeISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDM 168
Cdd:cd03222 66 ----------------------------------------KPQYID-LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI 104
|
170 180 190
....*....|....*....|....*....|....*....
gi 446504261 169 KHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIV 207
Cdd:cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1-228 |
2.00e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 63.34 E-value: 2.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNK----PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGE---------------IFLN 61
Cdd:PRK10261 12 VLAVENLNIAFMQEqqkiAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLvqcdkmllrrrsrqvIELS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 62 HQNIADIKTaVYAKHVATLRQAP--GFNLRLTVEELVS--------FGRFPYSRGVLTEQDHQVVDEAIEFLSleplrkS 131
Cdd:PRK10261 92 EQSAAQMRH-VRGADMAMIFQEPmtSLNPVFTVGEQIAesirlhqgASREEAMVEAKRMLDQVRIPEAQTILS------R 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 132 YIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKN 211
Cdd:PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244
|
250
....*....|....*..
gi 446504261 212 GKLHFSGLTEQVITEAQ 228
Cdd:PRK10261 245 GEAVETGSVEQIFHAPQ 261
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
5-233 |
2.12e-11 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 63.41 E-value: 2.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 5 KNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTlLMMMARLIEPD---KGEIF-----LNHQNIADIKtavyAKH 76
Cdd:PRK13549 9 KNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKST-LMKVLSGVYPHgtyEGEIIfegeeLQASNIRDTE----RAG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQAPGFNLRLTVEELVSFGRFPYSRGVLteQDHQVVDEAIEFL-----SLEPLRKsyIDEISGGQRQMAFLAMTIA 151
Cdd:PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIM--DYDAMYLRAQKLLaqlklDINPATP--VGNLGLGQQQLVEIAKALN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 152 QQTDVLLLDEPLNNL---DMKHAVQIMRALRRlcdeQGRTVILVIHDINFATNYSDHIVALKNGKlHF-----SGLTE-Q 222
Cdd:PRK13549 160 KQARLLILDEPTASLtesETAVLLDIIRDLKA----HGIACIYISHKLNEVKAISDTICVIRDGR-HIgtrpaAGMTEdD 234
|
250
....*....|....
gi 446504261 223 VITEA---QLNDLY 233
Cdd:PRK13549 235 IITMMvgrELTALY 248
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
16-207 |
2.13e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 63.81 E-value: 2.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAPGF---NLRLTV 92
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLfsgSLRMNL 1380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EelvsfgrfPYSRgvLTEQDhqvVDEAIE------FLSLEPLRKSYI-----DEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:TIGR00957 1381 D--------PFSQ--YSDEE---VWWALElahlktFVSALPDKLDHEcaeggENLSVGQRQLVCLARALLRKTKILVLDE 1447
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446504261 162 PLNNLDMKHAVQIMRALRRLCDEQgrTVILVIHDINFATNYSDHIV 207
Cdd:TIGR00957 1448 ATAAVDLETDNLIQSTIRTQFEDC--TVLTIAHRLNTIMDYTRVIV 1491
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
20-223 |
3.82e-11 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 61.54 E-value: 3.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 20 VNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKH--VATLRqapgfNLRL----TVE 93
Cdd:PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMgvVRTFQ-----HVRLfremTVI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 94 E--LVSFGRF---PYSRGVLT-----EQDHQVVDEA---IEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLD 160
Cdd:PRK11300 99 EnlLVAQHQQlktGLFSGLLKtpafrRAESEALDRAatwLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 161 EPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQV 223
Cdd:PRK11300 179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
12-214 |
4.73e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 62.66 E-value: 4.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 12 GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMmmARLIEPDKGEiflNHqniADIKTAV-YAKHVATLRQApgfnlrl 90
Cdd:TIGR00957 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLS--ALLAEMDKVE---GH---VHMKGSVaYVPQQAWIQND------- 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 91 TVEELVSFGRfpysrgVLTEQDHQVVDEAIEFLS-LEPLRKSYIDEI-------SGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:TIGR00957 714 SLRENILFGK------ALNEKYYQQVLEACALLPdLEILPSGDRTEIgekgvnlSGGQKQRVSLARAVYSNADIYLFDDP 787
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 163 LNNLD-------MKHAVQIMRALRrlcdeqGRTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:TIGR00957 788 LSAVDahvgkhiFEHVIGPEGVLK------NKTRILVTHGISYLPQ-VDVIIVMSGGKI 839
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
15-218 |
9.41e-11 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 61.85 E-value: 9.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 15 PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqniadiktavyaKHVATLRQAPGFNLRL--TV 92
Cdd:TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI----------------KHSGRISFSPQTSWIMpgTI 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EELVSFG----RFPYSRGVLTEQdhqvVDEAIEFLSLE---PLRKSYIdEISGGQRQMAFLAMTIAQQTDVLLLDEPLNN 165
Cdd:TIGR01271 504 KDNIIFGlsydEYRYTSVIKACQ----LEEDIALFPEKdktVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFTH 578
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446504261 166 LDMKHAVQIMRalRRLCD-EQGRTVILVIHDINFATNySDHIVALKNGKLHFSG 218
Cdd:TIGR01271 579 LDVVTEKEIFE--SCLCKlMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYG 629
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
6-194 |
1.10e-10 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 61.43 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 6 NINKSYGNKPILTDVNVEFPT-------------GQVTSLIGPNGAGKSTLLMMMARLIEPD--KGEIFLNHQNIadikT 70
Cdd:PLN03211 60 NIKRILGHKPKISDETRQIQErtilngvtgmaspGEILAVLGPSGSGKSTLLNALAGRIQGNnfTGTILANNRKP----T 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 71 AVYAKHVATLRQAPGFNLRLTVEE---LVSFGRFPYSrgvLTEQDH-QVVDEAIEFLSLEP-----LRKSYIDEISGGQR 141
Cdd:PLN03211 136 KQILKRTGFVTQDDILYPHLTVREtlvFCSLLRLPKS---LTKQEKiLVAESVISELGLTKcentiIGNSFIRGISGGER 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446504261 142 QMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIH 194
Cdd:PLN03211 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA-QKGKTIVTSMH 264
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
16-194 |
1.35e-10 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 61.28 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMAR-----LIEpdKGEIFLN---------------HQNIADIKTAvyak 75
Cdd:TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAErvttgVIT--GGDRLVNgrpldssfqrsigyvQQQDLHLPTS---- 851
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 76 hvaTLRQAPGFNLRLtveelvsfgRFPYSrgVLTEQDHQVVDEAIEFLSLEplrkSYIDEISG--------GQRQMAFLA 147
Cdd:TIGR00956 852 ---TVRESLRFSAYL---------RQPKS--VSKSEKMEYVEEVIKLLEME----SYADAVVGvpgeglnvEQRKRLTIG 913
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 446504261 148 MTIAQQTDVLL-LDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIH 194
Cdd:TIGR00956 914 VELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIH 960
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
14-213 |
1.43e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 60.87 E-value: 1.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 14 KPILTDVNVEFPTGQVTSLIGPNGAGKS-TLLMMMARLIEPD----KGEIFLNHQNIadiktaVYAKHvATLRQAPGFNL 88
Cdd:PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPvvypSGDIRFHGESL------LHASE-QTLRGVRGNKI 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 89 RLTVEE-LVSFGRFpysrgvlteqdHQVVDEAIEFLSL------EPLRKSYID-------------------EISGGQRQ 142
Cdd:PRK15134 95 AMIFQEpMVSLNPL-----------HTLEKQLYEVLSLhrgmrrEAARGEILNcldrvgirqaakrltdyphQLSGGERQ 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 143 MAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1-213 |
3.73e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 59.45 E-value: 3.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARlIEPD---KGEIF-----LNHQNIADIKtav 72
Cdd:TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHgtwDGEIYwsgspLKASNIRDTE--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 yAKHVATLRQAPGFNLRLTVEELVSFGRFPYSRGVLTEQDHQV--VDEAIEFLSLEPLRKS-YIDEISGGQRQMAFLAMT 149
Cdd:TIGR02633 77 -RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYlrAKNLLRELQLDADNVTrPVGDYGGGQQQLVEIAKA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 150 IAQQTDVLLLDEPLNNLDMKHaVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:TIGR02633 156 LNKQARLLILDEPSSSLTEKE-TEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
17-214 |
9.70e-10 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 56.29 E-value: 9.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIA--DIKTAVYAK--HVATLRQAPGFNLRLTV 92
Cdd:cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTrrSPRDAIRAGiaYVPEDRKREGLVLDLSV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EELVSFGRFpysrgvlteqdhqvvdeaieflsleplrksyideISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAV 172
Cdd:cd03215 96 AENIALSSL----------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446504261 173 QIMRALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:cd03215 142 EIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
2-211 |
1.78e-09 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 57.73 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY---GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIE-------------------------- 52
Cdd:PTZ00265 1166 IEIMDVNFRYisrPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDlkndhhivfknehtndmtneqdyqgd 1245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 53 ----------------------------PDKGEIFLNHQNIADIKTAVYAKHVATLRQAPG-FNLrlTVEELVSFGRFPY 103
Cdd:PTZ00265 1246 eeqnvgmknvnefsltkeggsgedstvfKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMlFNM--SIYENIKFGKEDA 1323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 104 SR-GVLTEQDHQVVDEAIEFL------SLEPLRKSyideISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMR 176
Cdd:PTZ00265 1324 TReDVKRACKFAAIDEFIESLpnkydtNVGPYGKS----LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399
|
250 260 270
....*....|....*....|....*....|....*
gi 446504261 177 ALRRLCDEQGRTVILVIHDINfATNYSDHIVALKN 211
Cdd:PTZ00265 1400 TIVDIKDKADKTIITIAHRIA-SIKRSDKIVVFNN 1433
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
2-229 |
2.37e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 57.44 E-value: 2.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSY---GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdiktavYAKHVA 78
Cdd:PLN03130 615 ISIKNGYFSWdskAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVA------YVPQVS 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLrqapgFNLrlTVEELVSFG----RFPYSRGV-LTEQDHQvvdeaiefLSLEPLRK-SYIDE----ISGGQRQMAFLAM 148
Cdd:PLN03130 689 WI-----FNA--TVRDNILFGspfdPERYERAIdVTALQHD--------LDLLPGGDlTEIGErgvnISGGQKQRVSMAR 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRlcDE-QGRTVILVIHDINFATnYSDHIVALKNGKLHFSGLTEQVITEA 227
Cdd:PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK--DElRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSNNG 830
|
..
gi 446504261 228 QL 229
Cdd:PLN03130 831 PL 832
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
15-218 |
2.95e-09 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 56.40 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 15 PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqniadiktavyaKHVATLRQAPGFNLRL--TV 92
Cdd:cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI----------------KHSGRISFSSQFSWIMpgTI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EELVSFG----RFPYSRGV-----------LTEQDHQVVDEAIEFLsleplrksyideiSGGQRQMAFLAMTIAQQTDVL 157
Cdd:cd03291 115 KENIIFGvsydEYRYKSVVkacqleeditkFPEKDNTVLGEGGITL-------------SGGQRARISLARAVYKDADLY 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALrrLCDEQG-RTVILVIHDINFATNySDHIVALKNGKLHFSG 218
Cdd:cd03291 182 LLDSPFGYLDVFTEKEIFESC--VCKLMAnKTRILVTSKMEHLKK-ADKILILHEGSSYFYG 240
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
17-231 |
3.03e-09 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 55.98 E-value: 3.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQniadiktavyakhVATLRQAPGFNLRLTVEELV 96
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 97 SFGRFpySRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMR 176
Cdd:PRK13546 107 EFKML--CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 177 ALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVIT--EAQLND 231
Cdd:PRK13546 185 KIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPkyEAFLND 240
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
2-218 |
4.91e-09 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 54.58 E-value: 4.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNIN----KSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD---KGEIFLNHQNIADIK----- 69
Cdd:cd03233 4 LSWRNISfttgKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAekypg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 70 TAVYAK----HVATLrqapgfnlrlTVEELVSFgrfpysrgVLTEQDHQVVdeaieflsleplRKsyideISGGQRQMAF 145
Cdd:cd03233 84 EIIYVSeedvHFPTL----------TVRETLDF--------ALRCKGNEFV------------RG-----ISGGERKRVS 128
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446504261 146 LAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDI-NFATNYSDHIVALKNGKLHFSG 218
Cdd:cd03233 129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQAsDEIYDLFDKVLVLYEGRQIYYG 202
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
27-209 |
6.39e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 56.02 E-value: 6.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNI---ADIKTAVYAKHVATLRQAPGFNL--RLTV-----EELV 96
Cdd:PRK10261 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIdtlSPGKLQALRRDIQFIFQDPYASLdpRQTVgdsimEPLR 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 97 SFGRFPysrgvlTEQDHQVVDEAIEFLSLEPLRK-SYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIM 175
Cdd:PRK10261 430 VHGLLP------GKAAAARVAWLLERVGLLPEHAwRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503
|
170 180 190
....*....|....*....|....*....|....
gi 446504261 176 RALRRLCDEQGRTVILVIHDINFATNYSdHIVAL 209
Cdd:PRK10261 504 NLLLDLQRDFGIAYLFISHDMAVVERIS-HRVAV 536
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
31-218 |
7.15e-09 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 56.02 E-value: 7.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 31 SLIGPNGAGKSTLLMMMARLIEPDKGEIFLNhqniADIKTAVYAKHVATlrqapgfNLRLTVEELVSFGR-FPysrGVLT 109
Cdd:PLN03073 539 AMVGPNGIGKSTILKLISGELQPSSGTVFRS----AKVRMAVFSQHHVD-------GLDLSSNPLLYMMRcFP---GVPE 604
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 110 EQ--DHQVVDEAIEFLSLEPLRKsyideISGGQR-QMAFLAMTIaQQTDVLLLDEPLNNLDMKhAVQIMraLRRLCDEQG 186
Cdd:PLN03073 605 QKlrAHLGSFGVTGNLALQPMYT-----LSGGQKsRVAFAKITF-KKPHILLLDEPSNHLDLD-AVEAL--IQGLVLFQG 675
|
170 180 190
....*....|....*....|....*....|...
gi 446504261 187 rTVILVIHDINFATNYSDHIVALKNGKLH-FSG 218
Cdd:PLN03073 676 -GVLMVSHDEHLISGSVDELWVVSEGKVTpFHG 707
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-223 |
8.08e-09 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 55.12 E-value: 8.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSY----GNKPILTDVNVEFPTGQVTSLIGPNGAGKS-TLLMMMARLIEPDK--GEIFLNHQNIADIKTA-- 71
Cdd:PRK09473 12 LLDVKDLRVTFstpdGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGLLAANGRigGSATFNGREILNLPEKel 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 72 --VYAKHVATLRQAPGFNLRltveelvsfgrfPYSRgvLTEQ------------DHQVVDEAIEFL---SLEPLRKS--- 131
Cdd:PRK09473 92 nkLRAEQISMIFQDPMTSLN------------PYMR--VGEQlmevlmlhkgmsKAEAFEESVRMLdavKMPEARKRmkm 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 132 YIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVALKN 211
Cdd:PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA 237
|
250
....*....|..
gi 446504261 212 GKLHFSGLTEQV 223
Cdd:PRK09473 238 GRTMEYGNARDV 249
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
17-226 |
1.68e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 54.51 E-value: 1.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqniaDIKTAvyakhVATLRQAPGFNLRLTVEELV 96
Cdd:PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV--------DIKGS-----AALIAISSGLNGQLTGIENI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 97 SFGRFpySRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMR 176
Cdd:PRK13545 107 ELKGL--MMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446504261 177 ALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK13545 185 KMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
27-227 |
1.73e-08 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 54.64 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQ--NIADIKTAVyAKHVATL---RQAPGFNLRLTVEE---LVSF 98
Cdd:COG1129 278 GEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKpvRIRSPRDAI-RAGIAYVpedRKGEGLVLDLSIREnitLASL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 99 GRFPySRGVLTEQD-HQVVDEAIEFLSLE-PLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMR 176
Cdd:COG1129 357 DRLS-RGGLLDRRReRALAEEYIKRLRIKtPSPEQPVGNLSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYR 435
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 177 ALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGKL--HFSG--LTEQVITEA 227
Cdd:COG1129 436 LIRELAA-EGKAVIVISSELPELLGLSDRILVMREGRIvgELDReeATEEAIMAA 489
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
130-225 |
1.92e-08 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 54.04 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 130 KSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVAL 209
Cdd:PRK15093 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL 232
|
90
....*....|....*.
gi 446504261 210 KNGKLHFSGLTEQVIT 225
Cdd:PRK15093 233 YCGQTVETAPSKELVT 248
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
15-214 |
1.97e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.60 E-value: 1.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 15 PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAPgfnlrLTVEE 94
Cdd:PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSP-----VLFSG 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 95 LVSFGRFPYSrgvltEQDHQVVDEAIEFLSL-EPLRKSYI----------DEISGGQRQMAFLAMTIAQQTDVLLLDEPL 163
Cdd:PLN03232 1325 TVRFNIDPFS-----EHNDADLWEALERAHIkDVIDRNPFgldaevseggENFSVGQRQLLSLARALLRRSKILVLDEAT 1399
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446504261 164 NNLDMKHAVQIMRALR---RLCdeqgrTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:PLN03232 1400 ASVDVRTDSLIQRTIReefKSC-----TMLVIAHRLNTIID-CDKILVLSSGQV 1447
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-213 |
2.88e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 54.03 E-value: 2.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 5 KNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLlmmMARL--IEPD---KGEIFLNHQ--NIADIKtAVYAKHV 77
Cdd:NF040905 5 RGITKTFPGVKALDDVNLSVREGEIHALCGENGAGKSTL---MKVLsgVYPHgsyEGEILFDGEvcRFKDIR-DSEALGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 78 ATLRQAPGFNLRLTVEELVSFGRFPYSRGVLteqD-HQVVDEAIEFLSLEPLRKS---YIDEISGGQRQMAFLAMTIAQQ 153
Cdd:NF040905 81 VIIHQELALIPYLSIAENIFLGNERAKRGVI---DwNETNRRARELLAKVGLDESpdtLVTDIGVGKQQLVEIAKALSKD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 154 TDVLLLDEP---LNNLDMKHAVQIMRALRrlcdEQGRTVILVIHDINFATNYSDHIVALKNGK 213
Cdd:NF040905 158 VKLLILDEPtaaLNEEDSAALLDLLLELK----AQGITSIIISHKLNEIRRVADSITVLRDGR 216
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
2-215 |
2.91e-08 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 54.10 E-value: 2.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMA-RLIE--PDKGEIFLNHQNI------------- 65
Cdd:PLN03073 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAmHAIDgiPKNCQILHVEQEVvgddttalqcvln 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 66 ADIKTAVYAKHVATLRQApgfNLRLTVEELVSFGRFPYSRGVLTEQDHQVVDEA---IEF----------------LSLE 126
Cdd:PLN03073 258 TDIERTQLLEEEAQLVAQ---QRELEFETETGKGKGANKDGVDKDAVSQRLEEIykrLELidaytaearaasilagLSFT 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 127 P-LRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMkHAVQimrALRRLCDEQGRTVILVIHDINFATNYSDH 205
Cdd:PLN03073 335 PeMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL-HAVL---WLETYLLKWPKTFIVVSHAREFLNTVVTD 410
|
250
....*....|
gi 446504261 206 IVALKNGKLH 215
Cdd:PLN03073 411 ILHLHGQKLV 420
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-68 |
3.02e-08 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 53.11 E-value: 3.02e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMA-----RLIEpdkGEIFLNHQNIADI 68
Cdd:CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAghpayKILE---GDILFKGESILDL 76
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
17-207 |
4.53e-08 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 52.26 E-value: 4.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTL----------------LMMMAR--LIEPDKGEIflnhQNIADIKTAVYAKHVA 78
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSLafdtiyaegqrryvesLSAYARqfLGQMDKPDV----DSIEGLSPAIAIDQKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLRqapgfNLRLTV---EELVSFGRFPYSRGVLTEQDHQVVDEAIEFLSLEplRKSyiDEISGGQRQMAFLAMTI-AQQT 154
Cdd:cd03270 87 TSR-----NPRSTVgtvTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLS--RSA--PTLSGGEAQRIRLATQIgSGLT 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 155 DVL-LLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIHD---INFAtnysDHIV 207
Cdd:cd03270 158 GVLyVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDedtIRAA----DHVI 209
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-235 |
4.90e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 53.08 E-value: 4.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIA-----DIKTAvyak 75
Cdd:PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTfngpkSSQEA---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 76 HVATLRQApgFNL--RLTVEELVSFGRFPYSR--GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIA 151
Cdd:PRK10762 80 GIGIIHQE--LNLipQLTIAENIFLGREFVNRfgRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 152 QQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKlhFSGltEQVITEAQLND 231
Cdd:PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVFRDGQ--FIA--EREVADLTEDS 232
|
....
gi 446504261 232 LYEL 235
Cdd:PRK10762 233 LIEM 236
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
1-194 |
6.81e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 52.10 E-value: 6.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMA--RLIEPDKGEIFLNHQNIADIKTAVYAKHVA 78
Cdd:PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAgrEDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 79 TLR-----QAPGFNLRLTVEELVSFGRFPYSRGVLTEQDHQ-VVDEAIEFLSLEP--LRKSYIDEISGGQRQMAFLAMTI 150
Cdd:PRK09580 81 FMAfqypvEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQdLMEEKIALLKMPEdlLTRSVNVGFSGGEKKRNDILQMA 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446504261 151 AQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQgRTVILVIH 194
Cdd:PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGK-RSFIIVTH 203
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-214 |
8.51e-08 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 52.48 E-value: 8.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINkSYGNKPIlTDVNVEFPTGQVTSLIGPNGAGKSTLlmmMARLIEPDK---GEIFLNHQNIAdIKTAVYA-----K 75
Cdd:PRK09700 268 VRNVT-SRDRKKV-RDISFSVCRGEILGFAGLVGSGRTEL---MNCLFGVDKragGEIRLNGKDIS-PRSPLDAvkkgmA 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 76 HVATLRQAPGFNLRLTVEELVSF------GRFPYSRGVLTEQDHQ-VVDEAIEFLSLEPLR-KSYIDEISGGQRQMAFLA 147
Cdd:PRK09700 342 YITESRRDNGFFPNFSIAQNMAIsrslkdGGYKGAMGLFHEVDEQrTAENQRELLALKCHSvNQNITELSGGNQQKVLIS 421
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446504261 148 MTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
2-100 |
8.82e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 52.43 E-value: 8.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMA--RLIEpdKGEIFLNHQNIADIK--TAVYAKhV 77
Cdd:NF033858 2 ARLEGVSHRYGKTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIAgaRKIQ--QGRVEVLGGDMADARhrRAVCPR-I 78
|
90 100
....*....|....*....|....*.
gi 446504261 78 ATLRQAPGFNL--RLTVEELVSF-GR 100
Cdd:NF033858 79 AYMPQGLGKNLypTLSVFENLDFfGR 104
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
1-214 |
1.07e-07 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 52.20 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNiadiktavyakHVATL 80
Cdd:PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE-----------RLGKL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 RQAPGFNLRLTVEELVSFGRFP-----------YSRGVLTEQDH-QVVDEAIEF--------------LSLE---PLRKS 131
Cdd:PRK15064 70 RQDQFAFEEFTVLDTVIMGHTElwevkqerdriYALPEMSEEDGmKVADLEVKFaemdgytaearageLLLGvgiPEEQH 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 132 Y--IDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDmkhaVQIMRALRRLCDEQGRTVILVIHDINFATNYSDHIVAL 209
Cdd:PRK15064 150 YglMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD----INTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADL 225
|
....*
gi 446504261 210 KNGKL 214
Cdd:PRK15064 226 DYGEL 230
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
117-234 |
1.43e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 51.28 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 117 DEAIEFLSLE--PLRKSYID----EISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVI 190
Cdd:PRK11022 129 QRAIDLLNQVgiPDPASRLDvyphQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALV 208
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 446504261 191 LVIHDINFATNYSDHIVALKNGKLHFSGLTEQVI-------TEAQLNDLYE 234
Cdd:PRK11022 209 LITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFraprhpyTQALLRALPE 259
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
13-194 |
2.21e-07 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 49.46 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 13 NKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIflnhqniadIKTAvyAKHVATLRQAPGFnlrltv 92
Cdd:cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI---------GMPE--GEDLLFLPQRPYL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 eelvsfgrfpySRGVLTEQdhqvvdeaieflslepLRKSYIDEISGGQRQ-MAFlAMTIAQQTDVLLLDEPLNNLDmkha 171
Cdd:cd03223 76 -----------PLGTLREQ----------------LIYPWDDVLSGGEQQrLAF-ARLLLHKPKFVFLDEATSALD---- 123
|
170 180
....*....|....*....|...
gi 446504261 172 VQIMRALRRLCDEQGRTVILVIH 194
Cdd:cd03223 124 EESEDRLYQLLKELGITVISVGH 146
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
15-214 |
2.26e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 51.66 E-value: 2.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 15 PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVATLRQAPgfnlrLTVEE 94
Cdd:PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAP-----VLFSG 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 95 LVSFGRFPYSrgvlteqDHQVVD--EAIEFLSL-EPLRKSYI----------DEISGGQRQMAFLAMTIAQQTDVLLLDE 161
Cdd:PLN03130 1328 TVRFNLDPFN-------EHNDADlwESLERAHLkDVIRRNSLgldaevseagENFSVGQRQLLSLARALLRRSKILVLDE 1400
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 162 PLNNLDMKHAVQIMRALR---RLCdeqgrTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:PLN03130 1401 ATAAVDVRTDALIQKTIReefKSC-----TMLIIAHRLNTIID-CDRILVLDAGRV 1450
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
17-218 |
3.88e-07 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 48.86 E-value: 3.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMmmarliepdkgeiflnhQNIADIKTAVYAKhvatlrqapgfnlrltveelv 96
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------------EGLYASGKARLIS--------------------- 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 97 SFGRFPYSRGVLTEQDHQVVDEAIEFLSLEplRKsyIDEISGGQRQMAFLAMTIAQQTD--VLLLDEPLNNLDMKHAVQI 174
Cdd:cd03238 53 FLPKFSRNKLIFIDQLQFLIDVGLGYLTLG--QK--LSTLSGGELQRVKLASELFSEPPgtLFILDEPSTGLHQQDINQL 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446504261 175 MRALRRLCDeQGRTVILVIHDINFaTNYSDHIVAL------KNGKLHFSG 218
Cdd:cd03238 129 LEVIKGLID-LGNTVILIEHNLDV-LSSADWIIDFgpgsgkSGGKVVFSG 176
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
19-229 |
4.46e-07 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 50.21 E-value: 4.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 19 DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD-KGEIFLNHQNIaDIKT---AVYAK--HVATLRQAPGFNLRLTV 92
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVFINGKPV-DIRNpaqAIRAGiaMVPEDRKRHGIVPILGV 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 93 EE---LVSFGRFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSY-IDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDM 168
Cdd:TIGR02633 357 GKnitLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLpIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 169 KHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFS----GLTEQVITEAQL 229
Cdd:TIGR02633 437 GAKYEIYKLINQLA-QEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDfvnhALTQEQVLAAAL 500
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
19-206 |
4.66e-07 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 50.09 E-value: 4.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 19 DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVYA---KHVATLRQAP--GFNLRLTVE 93
Cdd:PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRavrSDIQMIFQDPlaSLNPRMTIG 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 94 ELVSFGRFPYSRGVLTEQDHQVVDEAIEFLSLEP-LRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAV 172
Cdd:PRK15079 119 EIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPnLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198
|
170 180 190
....*....|....*....|....*....|....
gi 446504261 173 QIMRALRRLCDEQGRTVILVIHDINFATNYSDHI 206
Cdd:PRK15079 199 QVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV 232
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
14-227 |
5.97e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 50.05 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 14 KPILT----------DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA-------VYakh 76
Cdd:PRK15439 266 APVLTvedltgegfrNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAqrlarglVY--- 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 VATLRQAPGFNLR---------LTVEELVSFGRFPYSRGVLtEQDHQVVDeaIEFLSLE-PLRKsyideISGGQRQMAFL 146
Cdd:PRK15439 343 LPEDRQSSGLYLDaplawnvcaLTHNRRGFWIKPARENAVL-ERYRRALN--IKFNHAEqAART-----LSGGNQQKVLI 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 147 AMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA-AQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493
|
.
gi 446504261 227 A 227
Cdd:PRK15439 494 T 494
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
4-196 |
1.05e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.52 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNINKSY--GNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDkGEIFLNHQNIADIKTAVYAKHVATLR 81
Cdd:TIGR01271 1220 VQGLTAKYteAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIP 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QapgfnlrltvEELVSFGRF-----PYSrgvlteqdhQVVDEAIEFLSLEPLRKSYIDE---------------ISGGQR 141
Cdd:TIGR01271 1299 Q----------KVFIFSGTFrknldPYE---------QWSDEEIWKVAEEVGLKSVIEQfpdkldfvlvdggyvLSNGHK 1359
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 142 QMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRL---CdeqgrTVILVIHDI 196
Cdd:TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSfsnC-----TVILSEHRV 1412
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
2-214 |
1.26e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 48.37 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGN--KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKtavyakhVAT 79
Cdd:cd03288 20 IKIHDLCVRYENnlKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-------LHT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQapgfNLRLTVEELVSFG---RFPYSRGVLTEQDHqvVDEAIEFLSLEPLRKSY---IDEI--------SGGQRQMAF 145
Cdd:cd03288 93 LRS----RLSIILQDPILFSgsiRFNLDPECKCTDDR--LWEALEIAQLKNMVKSLpggLDAVvteggenfSVGQRQLFC 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446504261 146 LAMTIAQQTDVLLLDEPLNNLDM--KHAVQ--IMRALrrlcdeQGRTVILVIHDINFATNySDHIVALKNGKL 214
Cdd:cd03288 167 LARAFVRKSSILIMDEATASIDMatENILQkvVMTAF------ADRTVVTIAHRVSTILD-ADLVLVLSRGIL 232
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
14-194 |
1.46e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 48.65 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 14 KPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMA--------RLIEPDKGEIFLNHQNiadiktaVYAKhVATLRQApg 85
Cdd:COG4178 376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAglwpygsgRIARPAGARVLFLPQR-------PYLP-LGTLREA-- 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 86 fnlrLTveelvsfgrFPYSRGVLTEQDhqvVDEAIEFLSLEPLrKSYIDEI-------SGGQRQ-MAFlAMTIAQQTDVL 157
Cdd:COG4178 446 ----LL---------YPATAEAFSDAE---LREALEAVGLGHL-AERLDEEadwdqvlSLGEQQrLAF-ARLLLHKPDWL 507
|
170 180 190
....*....|....*....|....*....|....*..
gi 446504261 158 LLDEPLNNLDMKHAVQIMRALRRLCdeQGRTVILVIH 194
Cdd:COG4178 508 FLDEATSALDEENEAALYQLLREEL--PGTTVISVGH 542
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
2-207 |
2.13e-06 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 47.22 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNInKSYGNKPIltdvnVEFPTGqVTSLIGPNGAGKSTLL--MMMARLIEPDKGEIFLNHQNIADIKTAVYAKHVAT 79
Cdd:cd03240 4 LSIRNI-RSFHERSE-----IEFFSP-LTLIVGQNGAGKTTIIeaLKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 80 LRQAPGFNLRLTveelvsfgrfpysrgvlteQDHQVVDEAIeFLSLEPLRKSYIDEI---SGGQRQMA------FLAMTI 150
Cdd:cd03240 77 FENANGKKYTIT-------------------RSLAILENVI-FCHQGESNWPLLDMRgrcSGGEKVLAsliirlALAETF 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 151 AQQTDVLLLDEPLNNLDMKHA----VQIMRALRRLCDEQgrtVILVIHDINFAtNYSDHIV 207
Cdd:cd03240 137 GSNCGILALDEPTTNLDEENIeeslAEIIEERKSQKNFQ---LIVITHDEELV-DAADHIY 193
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
26-212 |
3.86e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 45.44 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 26 TGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLnhqniadiktavyakhvatlrqapgfnlrLTVEELVsfgrfpysr 105
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY-----------------------------IDGEDIL--------- 42
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 106 gvlteqdhqvvdEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIM-----RALRR 180
Cdd:smart00382 43 ------------EEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLlleelRLLLL 110
|
170 180 190
....*....|....*....|....*....|....*..
gi 446504261 181 LCDEQGRTVILVIHDINF-----ATNYSDHIVALKNG 212
Cdd:smart00382 111 LKSEKNLTVILTTNDEKDlgpalLRRRFDRRIVLLLI 147
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
15-214 |
3.96e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 47.31 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 15 PILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA-------VYakhVATLRQAPGFN 87
Cdd:PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQdglangiVY---ISEDRKRDGLV 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 88 LRLTVEE---LVSFGRFPYSRGVLTEQD-HQVVDEAIEFLSLE-PLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:PRK10762 343 LGMSVKEnmsLTALRYFSRAGGSLKHADeQQAVSDFIRLFNIKtPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 446504261 163 LNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK10762 423 TRGVDVGAKKEIYQLINQF-KAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
17-196 |
1.17e-05 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 45.73 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMArLIE-PDKGEIFLNHQNIADIKTAVyakhVATLRQA-------P--GF 86
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT-MIEtPTGGELYYQGQDLLKADPEA----QKLLRQKiqivfqnPygSL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 87 NLRLTVEElvsfgrfpysrgVLTE--------QDHQVVDEAIEFLSLEPLR----KSYIDEISGGQRQMAFLAMTIAQQT 154
Cdd:PRK11308 106 NPRKKVGQ------------ILEEpllintslSAAERREKALAMMAKVGLRpehyDRYPHMFSGGQRQRIAIARALMLDP 173
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446504261 155 DVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDI 196
Cdd:PRK11308 174 DVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL 215
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-214 |
1.38e-05 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 45.79 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 4 VKNIN-KSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTA-VYAKHVATL- 80
Cdd:COG3845 260 VENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSPReRRRLGVAYIp 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 81 --RQAPGFNLRLTVEE---LVSFGRFPYSRGVL---------TEQ---DHQV----VDEAIEFLSleplrksyideisGG 139
Cdd:COG3845 340 edRLGRGLVPDMSVAEnliLGRYRRPPFSRGGFldrkairafAEElieEFDVrtpgPDTPARSLS-------------GG 406
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446504261 140 QRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:COG3845 407 NQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRD-AGAAVLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
27-234 |
1.56e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 45.55 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEI-FLNHQNIADIKTAVYAKHVATLrqapgfnlrltveELVSFGRFPYSR 105
Cdd:PRK10636 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYtFPGNWQLAWVNQETPALPQPAL-------------EYVIDGDREYRQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 106 gvlTEQDHQVVDE-----AIEFL-------------------------SLEPLRKSyIDEISGGQRQMAFLAMTIAQQTD 155
Cdd:PRK10636 94 ---LEAQLHDANErndghAIATIhgkldaidawtirsraasllhglgfSNEQLERP-VSDFSGGWRMRLNLAQALICRSD 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 156 VLLLDEPLNNLDMKHAVQIMRALRrlcDEQGrTVILVIHDINFATNYSDHIVALKNGKL-----HFSGLTEQVITE-AQL 229
Cdd:PRK10636 170 LLLLDEPTNHLDLDAVIWLEKWLK---SYQG-TLILISHDRDFLDPIVDKIIHIEQQSLfeytgNYSSFEVQRATRlAQQ 245
|
....*
gi 446504261 230 NDLYE 234
Cdd:PRK10636 246 QAMYE 250
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
116-207 |
1.66e-05 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 45.77 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 116 VDEAIEFLSLEplRKSyiDEISGGQRQMAFLAMTI-AQQTDVL-LLDEPLNNLDMKHAVQIMRALRRLCDeQGRTVILVI 193
Cdd:TIGR00630 473 IDVGLDYLSLS--RAA--GTLSGGEAQRIRLATQIgSGLTGVLyVLDEPSIGLHQRDNRRLINTLKRLRD-LGNTLIVVE 547
|
90
....*....|....*..
gi 446504261 194 HD---INFAtnysDHIV 207
Cdd:TIGR00630 548 HDedtIRAA----DYVI 560
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
127-229 |
1.85e-05 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 45.29 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 127 PLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDM--KHavQIMRALRRLCdEQGRTVILVIHDINFATNYSD 204
Cdd:PRK11288 388 PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVgaKH--EIYNVIYELA-AQGVAVLFVSSDLPEVLGVAD 464
|
90 100
....*....|....*....|....*.
gi 446504261 205 HIVALKNGKLhfSG-LTEQVITEAQL 229
Cdd:PRK11288 465 RIVVMREGRI--AGeLAREQATERQA 488
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
2-226 |
4.34e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 43.96 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNINKSYGNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLlMMMARLIEPDKGEiflnhqniADIKTAVYAKHVATLR 81
Cdd:NF000106 14 VEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGR--------RPWRF*TWCANRRALR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 82 QAPGFNLRLTVEELVSF-GR---FPYSRGV-LTEQDHQV-VDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTD 155
Cdd:NF000106 85 RTIG*HRPVR*GRRESFsGRenlYMIGR*LdLSRKDARArADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446504261 156 VLLLDEPLNNLDMKHAVQIMRALRRLCDEqGRTVILVIHDINFATNYSDHIVALKNGKLHFSGLTEQVITE 226
Cdd:NF000106 165 VLYLDEPTTGLDPRTRNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTK 234
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
16-225 |
5.64e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 44.07 E-value: 5.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 16 ILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPD---KGEIFLNHQNIAD---IKTAVYAK----HVA--TLRQA 83
Cdd:PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSlkvSGEITYNGYRLNEfvpRKTSAYISqndvHVGvmTVKET 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 84 PGFNLRL----TVEELVS-FGRFPYSRGVLTEQD---------------HQVVDEAIEFLSLEPLRKSYI-DE----ISG 138
Cdd:PLN03140 260 LDFSARCqgvgTRYDLLSeLARREKDAGIFPEAEvdlfmkatamegvksSLITDYTLKILGLDICKDTIVgDEmirgISG 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 139 GQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCDEQGRTVILVIHDINFAT-NYSDHIVALKNGKLHFS 217
Cdd:PLN03140 340 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETfDLFDDIILLSEGQIVYQ 419
|
....*...
gi 446504261 218 GLTEQVIT 225
Cdd:PLN03140 420 GPRDHILE 427
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
2-44 |
6.04e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 43.77 E-value: 6.04e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 446504261 2 IHVKNInKSYgnkpiltdVNVEFPTGQVTSLIGPNGAGKSTLL 44
Cdd:COG4637 5 IRIKNF-KSL--------RDLELPLGPLTVLIGANGSGKSNLL 38
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
136-227 |
9.62e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 43.08 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 136 ISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLcDEQGRTVILVIHDINFATNYSDHIVALKNGKLH 215
Cdd:PRK10938 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL-HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA 214
|
90
....*....|..
gi 446504261 216 FSGLTEQVITEA 227
Cdd:PRK10938 215 ETGEREEILQQA 226
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
27-196 |
1.07e-04 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 43.46 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 27 GQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIAdikTAVYAKHvATLRQAPGFNlrlTVEELVSfGR---FPY 103
Cdd:TIGR01257 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL---TNISDVH-QNMGYCPQFD---AIDDLLT-GRehlYLY 2036
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 104 SR--GVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRL 181
Cdd:TIGR01257 2037 ARlrGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116
|
170
....*....|....*
gi 446504261 182 CDEqGRTVILVIHDI 196
Cdd:TIGR01257 2117 IRE-GRAVVLTSHSM 2130
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
22-59 |
3.02e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 37.96 E-value: 3.02e-04
10 20 30
....*....|....*....|....*....|....*...
gi 446504261 22 VEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIF 59
Cdd:pfam13555 17 IPIDPRGNTLLTGPSGSGKSTLLDAIQTLLVPAKRARF 54
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
2-44 |
4.20e-04 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 40.17 E-value: 4.20e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 446504261 2 IHVKNInKSYGnkpiltDVNVEFPTGqVTSLIGPNGAGKSTLL 44
Cdd:pfam13476 1 LTIENF-RSFR------DQTIDFSKG-LTLITGPNGSGKTTIL 35
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
2-58 |
9.14e-04 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 39.60 E-value: 9.14e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 446504261 2 IHVKNInksygnKPIlTDVNVEFPTG-QVTSLIGPNGAGKSTLLMMMARLIEPDKGEI 58
Cdd:COG3950 6 LTIENF------RGF-EDLEIDFDNPpRLTVLVGENGSGKTTLLEAIALALSGLLSRL 56
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
2-241 |
1.52e-03 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 39.22 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNInKSYGnkpiltDVNVEFPTGqVTSLIGPNGAGKSTLLMMMARLIEPDKG-----EIFLNHQNIADI-------- 68
Cdd:COG3593 6 IKIKNF-RSIK------DLSIELSDD-LTVLVGENNSGKSSILEALRLLLGPSSSrkfdeEDFYLGDDPDLPeieieltf 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 69 --------KTAVYAKHVATLRQA-----PGFNLRL-TVEELVS--FGRFPYSRGV---LTEQDHQVVDEAIEfLSLEPLR 129
Cdd:COG3593 78 gsllsrllRLLLKEEDKEELEEAleelnEELKEALkALNELLSeyLKELLDGLDLeleLSLDELEDLLKSLS-LRIEDGK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 130 KSYIDEISGGQRQMAFLAMTIA-------QQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNY 202
Cdd:COG3593 157 ELPLDRLGSGFQRLILLALLSAlaelkraPANPILLIEEPEAHLHPQAQRRLLKLLKELS-EKPNQVIITTHSPHLLSEV 235
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 446504261 203 S-DHIVALKNGKlhfSGLTEQVITEAQLNDLYELDFEITY 241
Cdd:COG3593 236 PlENIRRLRRDS---GGTTSTKLIDLDDEDLRKLLRYLGV 272
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
19-162 |
1.59e-03 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 39.72 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 19 DVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIA--DIKTAvyaKHVATLRQApgFNL--RLTVEE 94
Cdd:NF033858 284 HVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDagDIATR---RRVGYMSQA--FSLygELTVRQ 358
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 95 -LVSFGR-FpysrGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEP 162
Cdd:NF033858 359 nLELHARlF----HLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLILDEP 424
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1-214 |
2.07e-03 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 38.94 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 1 MIHVKNINKSygNKPILTDVNVEFPTGQVTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADiKTAVYAKH---- 76
Cdd:PRK10982 250 ILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINN-HNANEAINhgfa 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 77 -VATLRQAPGF--NLRLTVEELVS-FGRFPYSRGVLT----EQDHQVVDEAIEFLSlePLRKSYIDEISGGQRQMAFLAM 148
Cdd:PRK10982 327 lVTEERRSTGIyaYLDIGFNSLISnIRNYKNKVGLLDnsrmKSDTQWVIDSMRVKT--PGHRTQIGSLSGGNQQKVIIGR 404
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446504261 149 TIAQQTDVLLLDEPLNNLDMKHAVQIMRALRRLCdEQGRTVILVIHDINFATNYSDHIVALKNGKL 214
Cdd:PRK10982 405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA-KKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
17-44 |
2.20e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 39.23 E-value: 2.20e-03
10 20
....*....|....*....|....*...
gi 446504261 17 LTDVNVEFPTGQVTSLIGPNGAGKSTLL 44
Cdd:TIGR00630 624 LKNITVSIPLGLFTCITGVSGSGKSTLI 651
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-181 |
3.20e-03 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 37.68 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 2 IHVKNInKSYGNKpiltdVNVEFPTGqVTSLIGPNGAGKSTLLMMMARLIE---PDKGEIFLNHQNIADIKTAV------ 72
Cdd:COG0419 5 LRLENF-RSYRDT-----ETIDFDDG-LNLIVGPNGAGKSTILEAIRYALYgkaRSRSKLRSDLINVGSEEASVelefeh 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 73 ----YA-----KHVATLRQAPGFNLRLTVEELVSFGRFPYSRGVLTEQDHQVVDEAIEFLSLEPLRKSYIDEI------- 136
Cdd:COG0419 78 ggkrYRierrqGEFAEFLEAKPSERKEALKRLLGLEIYEELKERLKELEEALESALEELAELQKLKQEILAQLsgldpie 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446504261 137 --SGGQRqmafLAMTIAQQTDvLLLDepLNNLDMKHAVQIMRALRRL 181
Cdd:COG0419 158 tlSGGER----LRLALADLLS-LILD--FGSLDEERLERLLDALEEL 197
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
32-69 |
5.87e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 36.12 E-value: 5.87e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 446504261 32 LIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNI--ADIK 69
Cdd:pfam07728 4 LVGPPGTGKTELAERLAAALSNRPVFYVQLTRDTteEDLF 43
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
29-73 |
6.44e-03 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 37.37 E-value: 6.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 446504261 29 VTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLNHQNIADIKTAVY 73
Cdd:pfam13304 1 INVLIGPNGSGKSNLLEALRFLADFDALVIGLTDERSRNGGIGGI 45
|
|
| COG4928 |
COG4928 |
Predicted P-loop ATPase, KAP-like [General function prediction only]; |
29-179 |
7.48e-03 |
|
Predicted P-loop ATPase, KAP-like [General function prediction only];
Pssm-ID: 443956 Cd Length: 386 Bit Score: 37.20 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446504261 29 VTSLIGPNGAGKSTLLMMMARLIEPDKGEIFLN-----HQNIADIKTAVYAKHVATLRQAPGFNLRLTvEELVSFGR--- 100
Cdd:COG4928 31 VIGLDGEWGSGKTSFLNLIEKELESNEKVIVVYfnawlYDGEEDLLAALLSEIAAELEKKKKKDKKAA-KKLKKYAKrls 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446504261 101 FPYSRGVLTEQDHQVVDEAIEFLsLEPLRKSYIDEISGGQRQMAFLAMTIAQQTDVLLLDEpLNNLDMKHAVQIMRALR 179
Cdd:COG4928 110 KLALKAGLLGGPAEAVAEALKAL-LKKEYKSKKKSIEAFREELEELLKELKGKRLVVFIDD-LDRCEPDEAIEVLELIK 186
|
|
| COG4938 |
COG4938 |
Predicted ATPase [General function prediction only]; |
2-44 |
8.21e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443965 [Multi-domain] Cd Length: 277 Bit Score: 36.87 E-value: 8.21e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 446504261 2 IHVKNInksygnKPIltdVNVEFPTGQVTSLIGPNGAGKSTLL 44
Cdd:COG4938 4 ISIKNF------GPF---KEAELELKPLTLLIGPNGSGKSTLI 37
|
|
| |
