NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446490507|ref|WP_000568361|]
View 

thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha [Staphylococcus aureus]

Protein Classification

thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha( domain architecture ID 10787196)

thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha is part of the E1 component of a multi-enzyme dehydrogenase complex such as branched-chain alpha-keto acid dehydrogenase, which catalyzes the multi-step oxidative decarboxylation of alpha-keto acids derived from the branched-chain amino-acids valine, leucine, and isoleucine

CATH:  3.40.50.970
EC:  1.2.4.-
Gene Ontology:  GO:0016624|GO:0030976
SCOP:  3001790

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
AcoA COG1071
TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha [Energy production and ...
8-326 1.92e-156

TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha [Energy production and conversion]; TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha is part of the Pathway/BioSystem: Pyruvate oxidation


:

Pssm-ID: 440689 [Multi-domain]  Cd Length: 348  Bit Score: 441.50  E-value: 1.92e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   8 GLSEEDLKVIYKWMDLGRKIDERLWLLNRAGKIPFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTF 87
Cdd:COG1071   16 DLSKEELLELYRDMLLIRRFEERALALQRQGKIGFYHLSIGQEAAQVGAAAALRPGDWIFPTYRDHGHALARGVDPKELM 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  88 LSAFGKKDDvNSGGKQMPSHFSSRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAG 167
Cdd:COG1071   96 AELFGKATG-PSKGRGGSMHFFDKELNFLGGSGIVGGQLPHAVGAALAAKLRGEDEVAVAFFGDGATSEGDFHEALNFAA 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 168 VHKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMT 247
Cdd:COG1071  175 VWKLPVVFVCENNGYAISTPVERQTAVETIADRAAGYGIPGVRVDGNDVLAVYAAVKEAVERARAGEGPTLIEAKTYRLG 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 248 AHSSDDDDQ-YRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVEEAYAFVYEE 326
Cdd:COG1071  255 GHSTSDDPTrYRTKEEVEEWRERDPIERLRAYLLEEGLLTEEELEAIEAEAKAEVEEAVEFAEASPEPDPEELFDDVYAE 334
 
Name Accession Description Interval E-value
AcoA COG1071
TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha [Energy production and ...
8-326 1.92e-156

TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha [Energy production and conversion]; TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440689 [Multi-domain]  Cd Length: 348  Bit Score: 441.50  E-value: 1.92e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   8 GLSEEDLKVIYKWMDLGRKIDERLWLLNRAGKIPFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTF 87
Cdd:COG1071   16 DLSKEELLELYRDMLLIRRFEERALALQRQGKIGFYHLSIGQEAAQVGAAAALRPGDWIFPTYRDHGHALARGVDPKELM 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  88 LSAFGKKDDvNSGGKQMPSHFSSRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAG 167
Cdd:COG1071   96 AELFGKATG-PSKGRGGSMHFFDKELNFLGGSGIVGGQLPHAVGAALAAKLRGEDEVAVAFFGDGATSEGDFHEALNFAA 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 168 VHKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMT 247
Cdd:COG1071  175 VWKLPVVFVCENNGYAISTPVERQTAVETIADRAAGYGIPGVRVDGNDVLAVYAAVKEAVERARAGEGPTLIEAKTYRLG 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 248 AHSSDDDDQ-YRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVEEAYAFVYEE 326
Cdd:COG1071  255 GHSTSDDPTrYRTKEEVEEWRERDPIERLRAYLLEEGLLTEEELEAIEAEAKAEVEEAVEFAEASPEPDPEELFDDVYAE 334
TPP_E1_PDC_ADC_BCADC cd02000
Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; ...
17-308 4.56e-135

Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).


Pssm-ID: 238958 [Multi-domain]  Cd Length: 293  Bit Score: 385.31  E-value: 4.56e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  17 IYKWMDLGRKIDERLWLLNRAGKIPFVV-SGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTFLSAFGKKD 95
Cdd:cd02000    1 LYRTMVLIRRFDERLLELYRQGKIGGFYhLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  96 DvNSGGKQMPSHFSSRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVC 175
Cdd:cd02000   81 G-PCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIF 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 176 VIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMTAHSSDDDD 255
Cdd:cd02000  160 VCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDP 239
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446490507 256 Q-YRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAA 308
Cdd:cd02000  240 SrYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293
PDH_E1_alph_x TIGR03181
pyruvate dehydrogenase E1 component, alpha subunit; Members of this protein family are the ...
9-326 1.49e-116

pyruvate dehydrogenase E1 component, alpha subunit; Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase]


Pssm-ID: 213783 [Multi-domain]  Cd Length: 341  Bit Score: 340.28  E-value: 1.49e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507    9 LSEEDLKVIYKWMDLGRKIDERLWLLNRAGKIPFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTFL 88
Cdd:TIGR03181  21 LSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   89 SAFGkkddvNSGGKQMPshfssRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGV 168
Cdd:TIGR03181 101 YWRG-----DERGSWDP-----EGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  169 HKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMTA 248
Cdd:TIGR03181 171 FKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGP 250
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446490507  249 H-SSDDDDQYRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVEEAYAFVYEE 326
Cdd:TIGR03181 251 HtTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAE 329
E1_dh pfam00676
Dehydrogenase E1 component; This family uses thiamine pyrophosphate as a cofactor. This family ...
18-317 8.08e-97

Dehydrogenase E1 component; This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.


Pssm-ID: 395548 [Multi-domain]  Cd Length: 300  Bit Score: 288.45  E-value: 8.08e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   18 YKWMDLGRKIDERLWLLNRAGKIPFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTFLSAFGKKDDV 97
Cdd:pfam00676   1 RRMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLEEIFAELYGRVAKG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   98 NSGGKQMpsHFSSRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVCVI 177
Cdd:pfam00676  81 KGGSMHG--YYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVC 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  178 INNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMTAHSSDDDDQ- 256
Cdd:pfam00676 159 ENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSt 238
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446490507  257 YRTKEEREAL-KKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVE 317
Cdd:pfam00676 239 YRTRDEYEEVrKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHPE 300
odpA CHL00149
pyruvate dehydrogenase E1 component alpha subunit; Reviewed
4-324 4.92e-46

pyruvate dehydrogenase E1 component alpha subunit; Reviewed


Pssm-ID: 177069 [Multi-domain]  Cd Length: 341  Bit Score: 159.26  E-value: 4.92e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   4 YKSLGLSEEDLKVIYKWMDLGRKIDERLWLLNRAGKI-PFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGIS 82
Cdd:CHL00149  12 SNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMfGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVP 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  83 AYDTFLSAFGKKDDVNSG-GKQMpsHFSSRSKNILSQSSPVATQIPHAVGAALA-------LKMDGKKKIATATVGEGSS 154
Cdd:CHL00149  92 PKNVMAELFGKETGCSRGrGGSM--HIFSAPHNFLGGFAFIGEGIPIALGAAFQsiyrqqvLKEVQPLRVTACFFGDGTT 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 155 NQGDFHEGLNFAGVHKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQ 234
Cdd:CHL00149 170 NNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGD 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 235 GSTLIEAVTSRMTAHSSDDDDQYRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYP 314
Cdd:CHL00149 250 GPTLIEALTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEP 329
                        330
                 ....*....|
gi 446490507 315 SVEEAYAFVY 324
Cdd:CHL00149 330 NISDLKKYLF 339
 
Name Accession Description Interval E-value
AcoA COG1071
TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha [Energy production and ...
8-326 1.92e-156

TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha [Energy production and conversion]; TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440689 [Multi-domain]  Cd Length: 348  Bit Score: 441.50  E-value: 1.92e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   8 GLSEEDLKVIYKWMDLGRKIDERLWLLNRAGKIPFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTF 87
Cdd:COG1071   16 DLSKEELLELYRDMLLIRRFEERALALQRQGKIGFYHLSIGQEAAQVGAAAALRPGDWIFPTYRDHGHALARGVDPKELM 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  88 LSAFGKKDDvNSGGKQMPSHFSSRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAG 167
Cdd:COG1071   96 AELFGKATG-PSKGRGGSMHFFDKELNFLGGSGIVGGQLPHAVGAALAAKLRGEDEVAVAFFGDGATSEGDFHEALNFAA 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 168 VHKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMT 247
Cdd:COG1071  175 VWKLPVVFVCENNGYAISTPVERQTAVETIADRAAGYGIPGVRVDGNDVLAVYAAVKEAVERARAGEGPTLIEAKTYRLG 254
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 248 AHSSDDDDQ-YRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVEEAYAFVYEE 326
Cdd:COG1071  255 GHSTSDDPTrYRTKEEVEEWRERDPIERLRAYLLEEGLLTEEELEAIEAEAKAEVEEAVEFAEASPEPDPEELFDDVYAE 334
TPP_E1_PDC_ADC_BCADC cd02000
Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; ...
17-308 4.56e-135

Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).


Pssm-ID: 238958 [Multi-domain]  Cd Length: 293  Bit Score: 385.31  E-value: 4.56e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  17 IYKWMDLGRKIDERLWLLNRAGKIPFVV-SGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTFLSAFGKKD 95
Cdd:cd02000    1 LYRTMVLIRRFDERLLELYRQGKIGGFYhLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  96 DvNSGGKQMPSHFSSRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVC 175
Cdd:cd02000   81 G-PCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIF 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 176 VIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMTAHSSDDDD 255
Cdd:cd02000  160 VCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDP 239
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446490507 256 Q-YRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAA 308
Cdd:cd02000  240 SrYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293
PDH_E1_alph_x TIGR03181
pyruvate dehydrogenase E1 component, alpha subunit; Members of this protein family are the ...
9-326 1.49e-116

pyruvate dehydrogenase E1 component, alpha subunit; Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase]


Pssm-ID: 213783 [Multi-domain]  Cd Length: 341  Bit Score: 340.28  E-value: 1.49e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507    9 LSEEDLKVIYKWMDLGRKIDERLWLLNRAGKIPFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTFL 88
Cdd:TIGR03181  21 LSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILL 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   89 SAFGkkddvNSGGKQMPshfssRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGV 168
Cdd:TIGR03181 101 YWRG-----DERGSWDP-----EGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGV 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  169 HKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMTA 248
Cdd:TIGR03181 171 FKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGP 250
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446490507  249 H-SSDDDDQYRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVEEAYAFVYEE 326
Cdd:TIGR03181 251 HtTADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAE 329
E1_dh pfam00676
Dehydrogenase E1 component; This family uses thiamine pyrophosphate as a cofactor. This family ...
18-317 8.08e-97

Dehydrogenase E1 component; This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.


Pssm-ID: 395548 [Multi-domain]  Cd Length: 300  Bit Score: 288.45  E-value: 8.08e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   18 YKWMDLGRKIDERLWLLNRAGKIPFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAYDTFLSAFGKKDDV 97
Cdd:pfam00676   1 RRMMTLRRMEDARDALYKRQGIRGFYHLYAGQEAAQVGIAAALEPGDYIIPGYRDHGNLLARGLSLEEIFAELYGRVAKG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   98 NSGGKQMpsHFSSRSKNILSQSSPVATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVCVI 177
Cdd:pfam00676  81 KGGSMHG--YYGAKGNRFYGGNGILGAQVPLGAGIALAAKYRGKKEVAITLYGDGAANQGDFFEGLNFAALWKLPVIFVC 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  178 INNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGSTLIEAVTSRMTAHSSDDDDQ- 256
Cdd:pfam00676 159 ENNQYGISTPAERASASTTYADRARGYGIPGLHVDGMDPLAVYQASKFAAERARTGKGPFLIELVTYRYGGHSMSDDPSt 238
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446490507  257 YRTKEEREAL-KKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVE 317
Cdd:pfam00676 239 YRTRDEYEEVrKKKDPIQRFKEHLVSKGVWSEEELKAIEKEVRKEVEEAFKKAESAPEPHPE 300
odpA CHL00149
pyruvate dehydrogenase E1 component alpha subunit; Reviewed
4-324 4.92e-46

pyruvate dehydrogenase E1 component alpha subunit; Reviewed


Pssm-ID: 177069 [Multi-domain]  Cd Length: 341  Bit Score: 159.26  E-value: 4.92e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   4 YKSLGLSEEDLKVIYKWMDLGRKIDERLWLLNRAGKI-PFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGIS 82
Cdd:CHL00149  12 SNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMfGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVP 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  83 AYDTFLSAFGKKDDVNSG-GKQMpsHFSSRSKNILSQSSPVATQIPHAVGAALA-------LKMDGKKKIATATVGEGSS 154
Cdd:CHL00149  92 PKNVMAELFGKETGCSRGrGGSM--HIFSAPHNFLGGFAFIGEGIPIALGAAFQsiyrqqvLKEVQPLRVTACFFGDGTT 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 155 NQGDFHEGLNFAGVHKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQ 234
Cdd:CHL00149 170 NNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGD 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 235 GSTLIEAVTSRMTAHSSDDDDQYRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYP 314
Cdd:CHL00149 250 GPTLIEALTYRFRGHSLADPDELRSKQEKEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEP 329
                        330
                 ....*....|
gi 446490507 315 SVEEAYAFVY 324
Cdd:CHL00149 330 NISDLKKYLF 339
PLN02374 PLN02374
pyruvate dehydrogenase (acetyl-transferring)
6-315 2.34e-37

pyruvate dehydrogenase (acetyl-transferring)


Pssm-ID: 215213 [Multi-domain]  Cd Length: 433  Bit Score: 138.54  E-value: 2.34e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507   6 SLGLSEEDLKVIYKWMDLGRKIDERLWLLNRAGKI-PFVVSGQGQEATQIGMAYALEEGDITAPYYRDLAFVTYMGISAY 84
Cdd:PLN02374  80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMfGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  85 DTFLSAFGKKDDVNSG-GKQMpsHFSSRSKNILSQSSPVATQIPHAVGAALA-------LKMDGKKKIATATVGEGSSNQ 156
Cdd:PLN02374 160 AVMSELFGKATGCCRGqGGSM--HMFSKEHNLLGGFAFIGEGIPVATGAAFSskyrrevLKEESCDDVTLAFFGDGTCNN 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 157 GDFHEGLNFAGVHKLPFVCVIINNKYAISVPDSLQYAAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAISGQGS 236
Cdd:PLN02374 238 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGP 317
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446490507 237 TLIEAVTSRMTAHSSDDDDQYRTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKDIINKATKAAEDAPYPS 315
Cdd:PLN02374 318 TLVECETYRFRGHSLADPDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPP 396
PLN02269 PLN02269
Pyruvate dehydrogenase E1 component subunit alpha
48-327 3.51e-36

Pyruvate dehydrogenase E1 component subunit alpha


Pssm-ID: 215152 [Multi-domain]  Cd Length: 362  Bit Score: 133.69  E-value: 3.51e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  48 GQEATQIGMAYALEEGD--ITApyYRDLAFVTYMGISAYDTFLSAFGKKDDVNSG-GKQMpsHFSSRSKNILSQSSPVAT 124
Cdd:PLN02269  67 GQEAVAVGMEAAITKEDaiITA--YRDHCTHLGRGGTVLEVFAELMGRKDGCSRGkGGSM--HFYKKDANFYGGHGIVGA 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 125 QIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVCVIINNKYAISVpdSLQYAAEKLSDRALGY 204
Cdd:PLN02269 143 QVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGT--AEWRAAKSPAYYKRGD 220
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 205 GIHGEQVDGNDPLAMYKAMKEARERAISgQGSTLIEAVTSRMTAHS-SDDDDQYRTKEEREALKKA-DCNEKFKKELLSA 282
Cdd:PLN02269 221 YVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSmSDPGSTYRTRDEISGVRQErDPIERVRKLLLAH 299
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 446490507 283 GIIDDAWLAEIEAEHKDIINKATKAAEDAPYPSVEEAYAFVYEEG 327
Cdd:PLN02269 300 ELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVKG 344
TPP_TK cd02012
Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK ...
126-258 1.23e-11

Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.


Pssm-ID: 238970 [Multi-domain]  Cd Length: 255  Bit Score: 63.68  E-value: 1.23e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 126 IPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVCVII-NNKYAISVPDSLQYAAEKLSDRALGY 204
Cdd:cd02012  111 LSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVdSNRIQIDGPTDDILFTEDLAKKFEAF 190
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446490507 205 GIHGEQVDGNDPLAMYKAMKEARE----------RAISGQGSTLIEAVTSrmTAHSSDDDDQYR 258
Cdd:cd02012  191 GWNVIEVDGHDVEEILAALEEAKKskgkptliiaKTIKGKGVPFMENTAK--WHGKPLGEEEVE 252
TPP_BFDC cd02002
Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins ...
126-243 2.06e-08

Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.


Pssm-ID: 238960 [Multi-domain]  Cd Length: 178  Bit Score: 52.98  E-value: 2.06e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 126 IPHAVGAALALkmDGKKKIATatVGEGSSNQGDfhEGLNFAGVHKLPFVCVIINNK-YAISVPDSLQYAAEKLSDR---- 200
Cdd:cd02002   55 LPAAVGAALAN--PDRKVVAI--IGDGSFMYTI--QALWTAARYGLPVTVVILNNRgYGALRSFLKRVGPEGPGENapdg 128
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446490507 201 -------------ALGYGIHGEQVDGNDplamykAMKEARERAISGQGSTLIEAVT 243
Cdd:cd02002  129 ldlldpgidfaaiAKAFGVEAERVETPE------ELDEALREALAEGGPALIEVVV 178
TPP_DXS cd02007
Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; ...
124-243 2.65e-08

Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).


Pssm-ID: 238965 [Multi-domain]  Cd Length: 195  Bit Score: 53.32  E-value: 2.65e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 124 TQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVcVIIN-NKYAIS----VPDSLQyaaekls 198
Cdd:cd02007   79 TSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMI-VILNdNEMSISpnvgTPGNLF------- 150
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 446490507 199 dRALGYGIHGEqVDGNDPLAMYKAMKEAREraisGQGSTLIEAVT 243
Cdd:cd02007  151 -EELGFRYIGP-VDGHNIEALIKVLKEVKD----LKGPVLLHVVT 189
PRK07092 PRK07092
benzoylformate decarboxylase; Reviewed
127-243 1.41e-06

benzoylformate decarboxylase; Reviewed


Pssm-ID: 235931 [Multi-domain]  Cd Length: 530  Bit Score: 49.57  E-value: 1.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 127 PHAVGAALALkmDGKKKIATatVGEGSSNQGDfhEGLNFAGVHKLPFVCVIINN-KYAisvpdSLQYAAEKLSDR----- 200
Cdd:PRK07092 414 PAAVGVALAQ--PGRRVIGL--IGDGSAMYSI--QALWSAAQLKLPVTFVILNNgRYG-----ALRWFAPVFGVRdvpgl 482
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 446490507 201 ----------ALGYGIHGEQVDGNDPLAmykamkEARERAISGQGSTLIEAVT 243
Cdd:PRK07092 483 dlpgldfvalARGYGCEAVRVSDAAELA------DALARALAADGPVLVEVEV 529
PRK05899 PRK05899
transketolase; Reviewed
126-243 2.87e-06

transketolase; Reviewed


Pssm-ID: 235639 [Multi-domain]  Cd Length: 586  Bit Score: 48.59  E-value: 2.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 126 IPHAVGAALALKMDGKK--KIATATVG-------------EGSSnqgdfHEGLNFAGVHKLPFVCVII-NNKYAIS--VP 187
Cdd:PRK05899 124 LANAVGMALAEKYLAALfnRPGLDIVDhytyvlcgdgdlmEGIS-----HEACSLAGHLKLGNLIVIYdDNRISIDgpTE 198
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446490507 188 DSLqyaAEKLSDRALGYGIHGEQVDGNDPLAMYKAMKEAReraiSGQGSTLIEAVT 243
Cdd:PRK05899 199 GWF---TEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAK----ASTKPTLIIAKT 247
TPP_enzymes cd00568
Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic ...
126-243 1.64e-05

Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.


Pssm-ID: 238318 [Multi-domain]  Cd Length: 168  Bit Score: 44.55  E-value: 1.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 126 IPHAVGAALALKmdgKKKIAtATVGEGSsnqgdFHEG---LNFAGVHKLPFVCVIINNKYAISVPDS------LQYAAEK 196
Cdd:cd00568   52 LPAAIGAALAAP---DRPVV-CIAGDGG-----FMMTgqeLATAVRYGLPVIVVVFNNGGYGTIRMHqeafygGRVSGTD 122
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446490507 197 LS-----DRALGYGIHGEQVDGNDplamykAMKEARERAISGQGSTLIEAVT 243
Cdd:cd00568  123 LSnpdfaALAEAYGAKGVRVEDPE------DLEAALAEALAAGGPALIEVKT 168
PRK08327 PRK08327
thiamine pyrophosphate-requiring protein;
129-246 3.97e-05

thiamine pyrophosphate-requiring protein;


Pssm-ID: 236243 [Multi-domain]  Cd Length: 569  Bit Score: 44.99  E-value: 3.97e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 129 AVGAALALKMDGKKKIATATVGEGS---SNQGDFHEglnFAGVHKLPFVCVIINNKYAISVPDSLQ------YAAEK--- 196
Cdd:PRK08327 435 ALGAALGAKLATPDRLVIATVGDGSfifGVPEAAHW---VAERYGLPVLVVVFNNGGWLAVKEAVLevypegYAARKgtf 511
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 197 ----LSDR------ALGYGIHGEQVDgnDPLAMYKAMKEARERAISGQGSTLIEAVTSRM 246
Cdd:PRK08327 512 pgtdFDPRpdfakiAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVDRV 569
TPP_Gcl cd02006
Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins ...
71-247 6.33e-05

Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.


Pssm-ID: 238964 [Multi-domain]  Cd Length: 202  Bit Score: 43.42  E-value: 6.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507  71 RDLAFVTYMGIS--AYDTFLSAFGKKDDVNSGgkqmpshfssrsknilsQSSPVATQIPHAVGAALAlkmDGKKKIATAt 148
Cdd:cd02006   23 RDVRYVTTIGLSqiAGAQMLHVYKPRHWINCG-----------------QAGPLGWTVPAALGVAAA---DPDRQVVAL- 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 149 vgegsSNQGDFH---EGLNFAGVHKLPFVCVIINNKY---------AISVPDSLQYAAEKLSDRAL-GYGI-HGEQVDG- 213
Cdd:cd02006   82 -----SGDYDFQfmiEELAVGAQHRIPYIHVLVNNAYlglirqaqrAFDMDYQVNLAFENINSSELgGYGVdHVKVAEGl 156
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 446490507 214 -------NDPLAMYKAMKEARERAISGQGSTLIEAVTSRMT 247
Cdd:cd02006  157 gckairvTKPEELAAAFEQAKKLMAEHRVPVVVEAILERVT 197
TPP_PK cd02011
Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK ...
126-232 8.85e-05

Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.


Pssm-ID: 238969 [Multi-domain]  Cd Length: 227  Bit Score: 43.09  E-value: 8.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 126 IPHAVGAAlalkMDGKKKIATATVGEGSSNQGDF------HEGLNFA---GVhkLPFVCViinNKYAISVPDSL-QYAAE 195
Cdd:cd02011   68 LSHAYGAV----FDNPDLIVACVVGDGEAETGPLatswhsNKFLNPAtdgAV--LPILHL---NGYKISNPTILaRISHE 138
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 446490507 196 KLSDRALGYGIHGEQVDGNDPLAMYKAMKEARERAIS 232
Cdd:cd02011  139 ELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIE 175
PRK12315 PRK12315
1-deoxy-D-xylulose-5-phosphate synthase; Provisional
124-184 3.16e-03

1-deoxy-D-xylulose-5-phosphate synthase; Provisional


Pssm-ID: 237053 [Multi-domain]  Cd Length: 581  Bit Score: 39.22  E-value: 3.16e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446490507 124 TQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVCVIINNKYAI 184
Cdd:PRK12315 117 TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSI 177
ProRS_anticodon_zinc cd00862
ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and ...
258-307 5.82e-03

ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.


Pssm-ID: 238439 [Multi-domain]  Cd Length: 202  Bit Score: 37.28  E-value: 5.82e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 446490507 258 RTKEEREALKKADCNEKFKKELLSAGIIDDAWLAEIEAEHKdiINKATKA 307
Cdd:cd00862  120 RALEFRDATRIVDTWEEFKEALNEKGIVLAPWCGEEECEEE--IKEETAA 167
PLN02582 PLN02582
1-deoxy-D-xylulose-5-phosphate synthase
123-240 8.90e-03

1-deoxy-D-xylulose-5-phosphate synthase


Pssm-ID: 178194 [Multi-domain]  Cd Length: 677  Bit Score: 37.96  E-value: 8.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446490507 123 ATQIPHAVGAALALKMDGKKKIATATVGEGSSNQGDFHEGLNFAGVHKLPFVcVIINNKYAISVPD-----------SLQ 191
Cdd:PLN02582 147 STTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMI-VILNDNKQVSLPTatldgpappvgALS 225
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446490507 192 YAAEKL-SDRAL------GYGIhGEQVDGNDPLAMYKAMKEARErAISGQGSTLIE 240
Cdd:PLN02582 226 SALSRLqSSRPLrelrevAKGV-TKQIGGPMHELAAKVDEYARG-MISGSGSTLFE 279
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH