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Conserved domains on  [gi|446477697|ref|WP_000555551|]
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MULTISPECIES: hypothetical protein [Escherichia]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3518 super family cl42717
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
3-121 8.14e-04

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG3518:

Pssm-ID: 442740  Cd Length: 162  Bit Score: 37.26  E-value: 8.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446477697   3 SFLQFLRDDNPGSSEDL-LNFVIS-DDLKY----ELGMLFSSRPLY-HETDDLPFVNSSVLNYGIK--ASVYGVSASEHS 73
Cdd:COG3518   13 SLLDRLTDDEPDRSRESpLSRVVSlEQLREsvrrDLEWLLNTRRGEaSLLAAYPEVRRSVLNYGLPdlSGASLGSPDDRE 92
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446477697  74 DtvnseISSRILITLQRYESRLGNPVVEHLFSDDNYSF---FSVTALFFMD 121
Cdd:COG3518   93 A-----IERAIRQAILRFEPRLRRVSVTVLPDDDDSPNtlrFRIEAVLWAD 138
 
Name Accession Description Interval E-value
COG3518 COG3518
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
3-121 8.14e-04

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442740  Cd Length: 162  Bit Score: 37.26  E-value: 8.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446477697   3 SFLQFLRDDNPGSSEDL-LNFVIS-DDLKY----ELGMLFSSRPLY-HETDDLPFVNSSVLNYGIK--ASVYGVSASEHS 73
Cdd:COG3518   13 SLLDRLTDDEPDRSRESpLSRVVSlEQLREsvrrDLEWLLNTRRGEaSLLAAYPEVRRSVLNYGLPdlSGASLGSPDDRE 92
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446477697  74 DtvnseISSRILITLQRYESRLGNPVVEHLFSDDNYSF---FSVTALFFMD 121
Cdd:COG3518   93 A-----IERAIRQAILRFEPRLRRVSVTVLPDDDDSPNtlrFRIEAVLWAD 138
 
Name Accession Description Interval E-value
COG3518 COG3518
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
3-121 8.14e-04

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442740  Cd Length: 162  Bit Score: 37.26  E-value: 8.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446477697   3 SFLQFLRDDNPGSSEDL-LNFVIS-DDLKY----ELGMLFSSRPLY-HETDDLPFVNSSVLNYGIK--ASVYGVSASEHS 73
Cdd:COG3518   13 SLLDRLTDDEPDRSRESpLSRVVSlEQLREsvrrDLEWLLNTRRGEaSLLAAYPEVRRSVLNYGLPdlSGASLGSPDDRE 92
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446477697  74 DtvnseISSRILITLQRYESRLGNPVVEHLFSDDNYSF---FSVTALFFMD 121
Cdd:COG3518   93 A-----IERAIRQAILRFEPRLRRVSVTVLPDDDDSPNtlrFRIEAVLWAD 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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