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Conserved domains on  [gi|446476299|ref|WP_000554153|]
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MULTISPECIES: regulatory protein YcgZ [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcgZ_fam NF040640
regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown ...
 1-77 6.75e-46

regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown function that appears to participate in regulatory cascades involved in processes such as biofilm formation and response to blue light. YcgZ is homologous to YmgB/AriR, a paralog also found in E. coli and described as having a role in regulatory cascades.


:

Pssm-ID: 468608  Cd Length: 77  Bit Score: 140.82  E-value: 6.75e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446476299  1 MHQNSVTSDSAGAITRYFAKANLPTQQETLGEIVTEILKDGRNLSRKSLCAKLLCRLEQATGEEEQKHYNALIGLLF 77
Cdd:NF040640  1 MRQNGYNPDSASDIARYFSKASLPSQQETLGQIVVEILRAGKNLNRKAICSKLLRRLELASSPEEERHYQELIGLLF 77
 
Name Accession Description Interval E-value
YcgZ_fam NF040640
regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown ...
 1-77 6.75e-46

regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown function that appears to participate in regulatory cascades involved in processes such as biofilm formation and response to blue light. YcgZ is homologous to YmgB/AriR, a paralog also found in E. coli and described as having a role in regulatory cascades.


Pssm-ID: 468608  Cd Length: 77  Bit Score: 140.82  E-value: 6.75e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446476299  1 MHQNSVTSDSAGAITRYFAKANLPTQQETLGEIVTEILKDGRNLSRKSLCAKLLCRLEQATGEEEQKHYNALIGLLF 77
Cdd:NF040640  1 MRQNGYNPDSASDIARYFSKASLPSQQETLGQIVVEILRAGKNLNRKAICSKLLRRLELASSPEEERHYQELIGLLF 77
YmgB pfam10798
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 26-59 1.19e-03

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


Pssm-ID: 431503  Cd Length: 59  Bit Score: 33.41  E-value: 1.19e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446476299  26 QQETLGEIVTEILKDGRNLSRKSLCAKLLCRLEQ 59
Cdd:pfam10798  2 EMEILGLIVREILASGMRVSNKAIILKLIHKLES 35
 
Name Accession Description Interval E-value
YcgZ_fam NF040640
regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown ...
 1-77 6.75e-46

regulatory protein YcgZ; YcgZ, as found in Escherichia coli, is a small protein of unknown function that appears to participate in regulatory cascades involved in processes such as biofilm formation and response to blue light. YcgZ is homologous to YmgB/AriR, a paralog also found in E. coli and described as having a role in regulatory cascades.


Pssm-ID: 468608  Cd Length: 77  Bit Score: 140.82  E-value: 6.75e-46
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446476299  1 MHQNSVTSDSAGAITRYFAKANLPTQQETLGEIVTEILKDGRNLSRKSLCAKLLCRLEQATGEEEQKHYNALIGLLF 77
Cdd:NF040640  1 MRQNGYNPDSASDIARYFSKASLPSQQETLGQIVVEILRAGKNLNRKAICSKLLRRLELASSPEEERHYQELIGLLF 77
YmgB pfam10798
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 26-59 1.19e-03

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


Pssm-ID: 431503  Cd Length: 59  Bit Score: 33.41  E-value: 1.19e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446476299  26 QQETLGEIVTEILKDGRNLSRKSLCAKLLCRLEQ 59
Cdd:pfam10798  2 EMEILGLIVREILASGMRVSNKAIILKLIHKLES 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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