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Conserved domains on  [gi|446475910|ref|WP_000553764|]
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MULTISPECIES: fimbrial-like protein [Gammaproteobacteria]

Protein Classification

fimbrial protein( domain architecture ID 10015028)

fimbrial protein similar to Escherichia coli fimbrial-like protein YadK, which is part of the yadCKLM-htrE-yadVN fimbrial operon and may contribute to adhesion to various surfaces in specific environmental niches

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 4-198 1.24e-111

putative fimbrial protein StaF; Provisional


:

Pssm-ID: 237933  Cd Length: 197  Bit Score: 316.63  E-value: 1.24e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910   4 TQRKLMKRIILFLSLQFPITYP-AIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSDNVTPESYQPGGKEFTVT 82
Cdd:PRK15262   1 TQRKLMKKIILFLGLLFALTSPpAYAGQDVDLTANIKNSTCQSGISNNGNVDLGTVGVGYFADNVTAETYYPGGKEFTIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910  83 VSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANE-VATGAKNVGVVLFSIQDPTNIFNVISSAGNSRSVYPVMTSA 161
Cdd:PRK15262  81 VVDCALQGTGSVLNQLHFDFRPQSGVMATGSQQIFANEaVAGGAKNVGVVIFSIQDPANTFNVLNSDGSSRSVYPVMTSA 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446475910 162 LHNSSWKFYARMQKIDPALDVISGQVMSHILVDVYYE 198
Cdd:PRK15262 161 LNNSSWKFYARMQKIDPALDVTSGQVTSHVLVDVYYE 197
 
Name Accession Description Interval E-value
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 4-198 1.24e-111

putative fimbrial protein StaF; Provisional


Pssm-ID: 237933  Cd Length: 197  Bit Score: 316.63  E-value: 1.24e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910   4 TQRKLMKRIILFLSLQFPITYP-AIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSDNVTPESYQPGGKEFTVT 82
Cdd:PRK15262   1 TQRKLMKKIILFLGLLFALTSPpAYAGQDVDLTANIKNSTCQSGISNNGNVDLGTVGVGYFADNVTAETYYPGGKEFTIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910  83 VSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANE-VATGAKNVGVVLFSIQDPTNIFNVISSAGNSRSVYPVMTSA 161
Cdd:PRK15262  81 VVDCALQGTGSVLNQLHFDFRPQSGVMATGSQQIFANEaVAGGAKNVGVVIFSIQDPANTFNVLNSDGSSRSVYPVMTSA 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446475910 162 LHNSSWKFYARMQKIDPALDVISGQVMSHILVDVYYE 198
Cdd:PRK15262 161 LNNSSWKFYARMQKIDPALDVTSGQVTSHVLVDVYYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
9-198 4.04e-15

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 69.68  E-value: 4.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910   9 MKRIILFLSLQFPITYPAIAGQD--IDLVANVKNSTCK-SGISNQGNIDLGVVGVGYFSDNVTPEsyqpGGKEFTVTVSD 85
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAADgtVNFTGTVVAPTCTiNTGSKDQTVDLGTVSTSDLNGVGSTS----GPKPFSIKLTN 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910  86 CalqgTGDVLNQLHIDFralSGVMAAGSRQIFANEVATGAKNVGVVLFSIQDptNIFNVissaGNSRSVYPVMTSAlhNS 165
Cdd:COG3539   77 C----DAGTSNSVKVTF---TGTADSANPGLLANTGSGGASGVGIQLLDSDG--TPIPL----GTPSSAVTLTSNG--SA 141

                        170       180       190
                 ....*....|....*....|....*....|...
gi 446475910 166 SWKFYARMQKIDPAldVISGQVMSHILVDVYYE 198
Cdd:COG3539  142 TLPFYARYVATGAT--VTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 4-198 1.24e-111

putative fimbrial protein StaF; Provisional


Pssm-ID: 237933  Cd Length: 197  Bit Score: 316.63  E-value: 1.24e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910   4 TQRKLMKRIILFLSLQFPITYP-AIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSDNVTPESYQPGGKEFTVT 82
Cdd:PRK15262   1 TQRKLMKKIILFLGLLFALTSPpAYAGQDVDLTANIKNSTCQSGISNNGNVDLGTVGVGYFADNVTAETYYPGGKEFTIT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910  83 VSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANE-VATGAKNVGVVLFSIQDPTNIFNVISSAGNSRSVYPVMTSA 161
Cdd:PRK15262  81 VVDCALQGTGSVLNQLHFDFRPQSGVMATGSQQIFANEaVAGGAKNVGVVIFSIQDPANTFNVLNSDGSSRSVYPVMTSA 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446475910 162 LHNSSWKFYARMQKIDPALDVISGQVMSHILVDVYYE 198
Cdd:PRK15262 161 LNNSSWKFYARMQKIDPALDVTSGQVTSHVLVDVYYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
9-198 4.04e-15

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 69.68  E-value: 4.04e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910   9 MKRIILFLSLQFPITYPAIAGQD--IDLVANVKNSTCK-SGISNQGNIDLGVVGVGYFSDNVTPEsyqpGGKEFTVTVSD 85
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAADgtVNFTGTVVAPTCTiNTGSKDQTVDLGTVSTSDLNGVGSTS----GPKPFSIKLTN 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446475910  86 CalqgTGDVLNQLHIDFralSGVMAAGSRQIFANEVATGAKNVGVVLFSIQDptNIFNVissaGNSRSVYPVMTSAlhNS 165
Cdd:COG3539   77 C----DAGTSNSVKVTF---TGTADSANPGLLANTGSGGASGVGIQLLDSDG--TPIPL----GTPSSAVTLTSNG--SA 141

                        170       180       190
                 ....*....|....*....|....*....|...
gi 446475910 166 SWKFYARMQKIDPAldVISGQVMSHILVDVYYE 198
Cdd:COG3539  142 TLPFYARYVATGAT--VTAGSFNATATFTIDYQ 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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