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Conserved domains on  [gi|446464078|ref|WP_000541932|]
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MULTISPECIES: DUF1542 domain-containing protein, partial [Staphylococcus]

Protein Classification

DUF1542 domain-containing protein( domain architecture ID 10540904)

DUF1542 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 199-273 2.56e-11

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


:

Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 59.91  E-value: 2.56e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446464078  199 VKQQAIESIENAAQQKINEINNHATLTPEQKEAAIAEVNKLKQQAIEQINNAADVHTVEEVQHQEQAHIEQFNPD 273
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQPP 75
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 361-436 5.28e-11

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


:

Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 58.75  E-value: 5.28e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446464078  361 RKKAAISKIKDISTDKIDRIRNSTIGTAEERQAAMNRINEIVLETIKDINNAQTPQQVEAALNNGIARILAVQIVT 436
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQPPT 76
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 30-103 2.11e-10

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


:

Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 57.21  E-value: 2.11e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446464078   30 AKEDAKNAIKALANAKRDQINSNPDLTLEQKAKALKEIDEAEKRALENIENAQTKDQLNQGLNLGLDDIRNTHV 103
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQP 74
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 280-353 1.43e-09

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


:

Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 54.90  E-value: 1.43e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446464078  280 AKSNAIKSISDAIQHMIDEINASKDLTDKEKQEAISKLNQLKDQSIQAIQRAQSIDEIAQQLEQFKAQLKAANP 353
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQP 74
 
Name Accession Description Interval E-value
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 199-273 2.56e-11

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 59.91  E-value: 2.56e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446464078  199 VKQQAIESIENAAQQKINEINNHATLTPEQKEAAIAEVNKLKQQAIEQINNAADVHTVEEVQHQEQAHIEQFNPD 273
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQPP 75
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 361-436 5.28e-11

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 58.75  E-value: 5.28e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446464078  361 RKKAAISKIKDISTDKIDRIRNSTIGTAEERQAAMNRINEIVLETIKDINNAQTPQQVEAALNNGIARILAVQIVT 436
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQPPT 76
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 30-103 2.11e-10

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 57.21  E-value: 2.11e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446464078   30 AKEDAKNAIKALANAKRDQINSNPDLTLEQKAKALKEIDEAEKRALENIENAQTKDQLNQGLNLGLDDIRNTHV 103
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQP 74
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 280-353 1.43e-09

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 54.90  E-value: 1.43e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446464078  280 AKSNAIKSISDAIQHMIDEINASKDLTDKEKQEAISKLNQLKDQSIQAIQRAQSIDEIAQQLEQFKAQLKAANP 353
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQP 74
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 228-431 2.51e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.54  E-value: 2.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 228 QKEAAIAEVNKLKQQAIEQINNAADVHTVEEVQHQEQAHIEQfnpdqfTIDQAKSnAIKSISDAIQHMIDEINASKDLTD 307
Cdd:COG1196  226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA------ELEELRL-ELEELELELEEAQAEEYELLAELA 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 308 KEKQEAISKLNQLKDQSIQAIQRAQSIDEIAQQLEQFKAQLKAANPFAKELENRKKAAISKIKDiSTDKIDRIRNSTIGT 387
Cdd:COG1196  299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE-AEEALLEAEAELAEA 377

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 446464078 388 AEERQAAMNRINEIVLETIKDINNAQTPQQVEAALNNGIARILA 431
Cdd:COG1196  378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 201-409 4.04e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.90  E-value: 4.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078   201 QQAIESIENAAQQKINEINNHATLTPEQKEAAIAEVNKLkqqaieqinnAADVHTVEEVQHQEQAHIE----QFNPDQFT 276
Cdd:TIGR02169  725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL----------EARIEELEEDLHKLEEALNdleaRLSHSRIP 794

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078   277 IDQAKSNAIKSISDAIQHMIDEINAS-------KDLTDKEKQEAISKLNQLKDQSIQaiqRAQSIDEIAQQLEQFKAQLK 349
Cdd:TIGR02169  795 EIQAELSKLEEEVSRIEARLREIEQKlnrltleKEYLEKEIQELQEQRIDLKEQIKS---IEKEIENLNGKKEELEEELE 871

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446464078   350 AANPFAKELENRKKAAISKIKDISTD------KIDRIrNSTIGTAEERQAAMNRINEIVLETIKDI 409
Cdd:TIGR02169  872 ELEAALRDLESRLGDLKKERDELEAQlrelerKIEEL-EAQIEKKRKRLSELKAKLEALEEELSEI 936
 
Name Accession Description Interval E-value
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 199-273 2.56e-11

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 59.91  E-value: 2.56e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446464078  199 VKQQAIESIENAAQQKINEINNHATLTPEQKEAAIAEVNKLKQQAIEQINNAADVHTVEEVQHQEQAHIEQFNPD 273
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQPP 75
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 361-436 5.28e-11

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 58.75  E-value: 5.28e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446464078  361 RKKAAISKIKDISTDKIDRIRNSTIGTAEERQAAMNRINEIVLETIKDINNAQTPQQVEAALNNGIARILAVQIVT 436
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQPPT 76
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 30-103 2.11e-10

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 57.21  E-value: 2.11e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446464078   30 AKEDAKNAIKALANAKRDQINSNPDLTLEQKAKALKEIDEAEKRALENIENAQTKDQLNQGLNLGLDDIRNTHV 103
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQP 74
DUF1542 pfam07564
Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, ...
 280-353 1.43e-09

Domain of Unknown Function (DUF1542); This domain is found in several cell surface proteins, such as extracellular matrix-binding protein ebh. Some members are involved in antibiotic resistance (e.g Swiss:Q9RL69 and Swiss:Q9LCJ9) and/or cellular adhesion. In some proteins it is repeated more than fifteen times, being the most repeated domain in streptococci. This is a predominantly alpha-helical domain that form a long, thin, fibre-like structure and it has been proposed to function as a stalk that helps the adhesive non-repeat region (NRR) of proteins protrude beyond the cell surface.


Pssm-ID: 429541 [Multi-domain]  Cd Length: 77  Bit Score: 54.90  E-value: 1.43e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446464078  280 AKSNAIKSISDAIQHMIDEINASKDLTDKEKQEAISKLNQLKDQSIQAIQRAQSIDEIAQQLEQFKAQLKAANP 353
Cdd:pfam07564   1 KKPDAKAAIDQAANEKKNEINNNPDATDEEKQEAINQVNQAKNQAINNINNATTNQDVDQAKNNGINAINNIQP 74
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 228-431 2.51e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.54  E-value: 2.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 228 QKEAAIAEVNKLKQQAIEQINNAADVHTVEEVQHQEQAHIEQfnpdqfTIDQAKSnAIKSISDAIQHMIDEINASKDLTD 307
Cdd:COG1196  226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA------ELEELRL-ELEELELELEEAQAEEYELLAELA 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 308 KEKQEAISKLNQLKDQSIQAIQRAQSIDEIAQQLEQFKAQLKAANPFAKELENRKKAAISKIKDiSTDKIDRIRNSTIGT 387
Cdd:COG1196  299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE-AEEALLEAEAELAEA 377

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 446464078 388 AEERQAAMNRINEIVLETIKDINNAQTPQQVEAALNNGIARILA 431
Cdd:COG1196  378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 201-409 4.04e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 43.90  E-value: 4.04e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078   201 QQAIESIENAAQQKINEINNHATLTPEQKEAAIAEVNKLkqqaieqinnAADVHTVEEVQHQEQAHIE----QFNPDQFT 276
Cdd:TIGR02169  725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL----------EARIEELEEDLHKLEEALNdleaRLSHSRIP 794

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078   277 IDQAKSNAIKSISDAIQHMIDEINAS-------KDLTDKEKQEAISKLNQLKDQSIQaiqRAQSIDEIAQQLEQFKAQLK 349
Cdd:TIGR02169  795 EIQAELSKLEEEVSRIEARLREIEQKlnrltleKEYLEKEIQELQEQRIDLKEQIKS---IEKEIENLNGKKEELEEELE 871

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446464078   350 AANPFAKELENRKKAAISKIKDISTD------KIDRIrNSTIGTAEERQAAMNRINEIVLETIKDI 409
Cdd:TIGR02169  872 ELEAALRDLESRLGDLKKERDELEAQlrelerKIEEL-EAQIEKKRKRLSELKAKLEALEEELSEI 936
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 13-351 1.44e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 1.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078  13 AKAQLAQALQDIKDLVKAKedaknaikaLANAKRDQINsnpdltlEQKAKALKEIDEAEKRALENIENAQTKDQLNQGLN 92
Cdd:COG1196  210 EKAERYRELKEELKELEAE---------LLLLKLRELE-------AELEELEAELEELEAELEELEAELAELEAELEELR 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078  93 LGLDDIRNthvwevDAQPAVNEIFDATPEQILVNGELIVHRDDIITEQDILAHINL-IDQLTAEIIDtpstatisdsltA 171
Cdd:COG1196  274 LELEELEL------ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEeLAELEEELEE------------L 335

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 172 KVEVTLLDGSKVIVNVPVKVVEKELTVVKQQAIEsIENAAQQKINEINNHATLTPEQKEAAIAEVNKLKQQAIEQINNAA 251
Cdd:COG1196  336 EEELEELEEELEEAEEELEEAEAELAEAEEALLE-AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 252 DVHTVEEVQHQEQAHIEQFNPDQFTIDQAKSNAIKSISDAIQHMIDEINASKDLTDKEKQEAiSKLNQLKDQSIQAIQRA 331
Cdd:COG1196  415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE-AALAELLEELAEAAARL 493

                        330       340
                 ....*....|....*....|
gi 446464078 332 QSIDEIAQQLEQFKAQLKAA 351
Cdd:COG1196  494 LLLLEAEADYEGFLEGVKAA 513
ANIS5_cation-bd pfam02520
SXP/RAL-2 family protein Ani s 5-like, metal-binding domain; This domain is found in proteins ...
 211-329 3.18e-03

SXP/RAL-2 family protein Ani s 5-like, metal-binding domain; This domain is found in proteins from nematodes, including SXP/RAL-2 family protein Ani s 5 (ANIS5) from Anisakis simplex, and comprises two conserved motifs: SXP1 and SXP2. Although the function of this domain is not clear, structural information from ANIS5 revealed an alpha helical arrangement with a Calmodulin-like fold. Functional studies indicates that ANIS5 can bind magnesium and calcium, suggesting that this domain plays a role in cation binding. These proteins are interesting targets to develop control strategies against the diseases caused by parasites.


Pssm-ID: 396877 [Multi-domain]  Cd Length: 107  Bit Score: 37.56  E-value: 3.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078  211 AQQKINEINNHATLTPEQKEAAI---AEVNKLKQQaieqinnaadvhtVEEVQHQEQAHIEQFNpdqftidQAKSNAIKS 287
Cdd:pfam02520   1 ARKEFFAILKNETLTIAEKEEQLaawAEKYGVTDQ-------------YKEFQANVTALKEEVK-------KNVTAVISN 60

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446464078  288 ISDAIQhMIDEINASKDLTDKEKQEAISKLNQLKDQSIQAIQ 329
Cdd:pfam02520  61 LSSVLN-QLSAILDNKNQTRAQQHEAIDALKQQYPREVDTLF 101
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 201-386 6.13e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.36  E-value: 6.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 201 QQAIESIE---NAAQQKINEINNHATLTPEQKEAAIAEVNKLKQQAIEQINNAADVHTVEEVQHQEQAHIEQFNPDQFTI 277
Cdd:COG4942   54 LKQLAALErriAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLD 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 278 DQAKSNAIKSISDAIQHMIDEINASKDLTDKEKQEAISKLNQLK----DQSIQAIQRAQSIDEIAQQLEQFKAQLKAANP 353
Cdd:COG4942  134 AVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEallaELEEERAALEALKAERQKLLARLEKELAELAA 213

                        170       180       190
                 ....*....|....*....|....*....|...
gi 446464078 354 FAKELENRKKAAISKIKDISTDKIDRIRNSTIG 386
Cdd:COG4942  214 ELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 200-472 8.94e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.04  E-value: 8.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 200 KQQAIESIENAAQQKINEINNHATLTPEQKEAAIAEVNKLKQQaIEQINNAADVHTVEEVQHQEQA-------------- 265
Cdd:COG3883   24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE-IDKLQAEIAEAEAEIEERREELgeraralyrsggsv 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 266 -HIEQF----NPDQFtIDQAksNAIKSISDAIQHMIDEINASKDLTDKEKQEAISKLNQLKDQSIQAIQRAQSIDEIAQQ 340
Cdd:COG3883  103 sYLDVLlgseSFSDF-LDRL--SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446464078 341 LEQFKAQLKAANPFAKELENRKKAAISKIKDISTDKIDRIRNSTIGTAEERQAAMNRINEIVLETIKDINNAQTPQQVEA 420
Cdd:COG3883  180 QEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAA 259

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446464078 421 ALNNGIARILAVQIVTSDHSKPSSNSDGQSNSHLHVGYGTVNHPFNSSPIGH 472
Cdd:COG3883  260 GSAGAAGAAAGAAGAGAAAASAAGGGAGGAGGGGGGGGAASGGSGGGSGGAG 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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