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Conserved domains on  [gi|446449406|ref|WP_000527261|]
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MULTISPECIES: glucose PTS transporter subunit IIA [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NagE COG2190
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
108-262 1.96e-56

Phosphotransferase system IIA component [Carbohydrate transport and metabolism];


:

Pssm-ID: 441793 [Multi-domain]  Cd Length: 154  Bit Score: 177.62  E-value: 1.96e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 108 KVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGV 187
Cdd:COG2190    1 KKSKTLTIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGG-KVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGI 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446449406 188 NTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADLGKVELTMNEIITTEDVIFKIFK 262
Cdd:COG2190   80 DTVKLNGEGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQVKAGDPLLTVKL 154
PtsG2 COG1264
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
9-82 9.20e-07

Phosphotransferase system IIB components [Carbohydrate transport and metabolism];


:

Pssm-ID: 440876 [Multi-domain]  Cd Length: 76  Bit Score: 45.49  E-value: 9.20e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446449406   9 AQDILTAVGGVENIVNVSYDTVRMTIHMHHAIPSTANEVTQIdGVASVDENETQLVIVFNEEVKYVYQQLQLLM 82
Cdd:COG1264    4 AKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
 
Name Accession Description Interval E-value
NagE COG2190
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
108-262 1.96e-56

Phosphotransferase system IIA component [Carbohydrate transport and metabolism];


Pssm-ID: 441793 [Multi-domain]  Cd Length: 154  Bit Score: 177.62  E-value: 1.96e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 108 KVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGV 187
Cdd:COG2190    1 KKSKTLTIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGG-KVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGI 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446449406 188 NTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADLGKVELTMNEIITTEDVIFKIFK 262
Cdd:COG2190   80 DTVKLNGEGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQVKAGDPLLTVKL 154
PTS_EIIA_1 pfam00358
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
113-234 3.50e-48

phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;


Pssm-ID: 459779 [Multi-domain]  Cd Length: 121  Bit Score: 155.61  E-value: 3.50e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  113 ILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGVNTVDL 192
Cdd:pfam00358   1 IEIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEG-KVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446449406  193 EGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVI 234
Cdd:pfam00358  80 KGEGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
PTS_IIA_glc cd00210
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 117-239 6.58e-42

PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238128 [Multi-domain]  Cd Length: 124  Bit Score: 139.73  E-value: 6.58e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 117 APIAGRRILLKEVRDSIFREKMVGEGLAIKAhEEFKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGVNTVDLEGKG 196
Cdd:cd00210    3 SPITGEIVPLDQVPDEVFASKMMGDGFAIKP-SDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEG 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 446449406 197 FKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSAD 239
Cdd:cd00210   82 FTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
PTS-II-ABC-beta TIGR01995
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ...
 97-257 2.58e-40

PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.


Pssm-ID: 273919 [Multi-domain]  Cd Length: 610  Bit Score: 146.73  E-value: 2.58e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406   97 DTQETEQKAQAKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAhEEFKVIAPFSGKVSMIVPTKHAIGIRSE 176
Cdd:TIGR01995 447 DQEDVVTQEAAALSKDESLYAPVAGEMLPLNEVPDEVFSSGAMGKGIAILP-TEGEVVAPVDGTVTAVFPTKHAIGIRSD 525

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  177 EGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADLGKVELTMNEIITTEDV 256
Cdd:TIGR01995 526 NGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDV 605


                  .
gi 446449406  257 I 257
Cdd:TIGR01995 606 L 606
PRK09824 PRK09824
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
 90-239 2.68e-32

PTS system beta-glucoside-specific transporter subunits IIABC; Provisional


Pssm-ID: 236627 [Multi-domain]  Cd Length: 627  Bit Score: 124.44  E-value: 2.68e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  90 DTNHDAVDTQETEQKAQAKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKH 169
Cdd:PRK09824 456 AKRQPAQVAPQEKTPEVITPPEQGGICSPMTGEVVPLEQVADTTFASGLLGKGIAILPSVG-EVRSPVAGRVASLFATLH 534

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 170 AIGIRSEEGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSAD 239
Cdd:PRK09824 535 AIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDD 604
PtsG2 COG1264
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
9-82 9.20e-07

Phosphotransferase system IIB components [Carbohydrate transport and metabolism];


Pssm-ID: 440876 [Multi-domain]  Cd Length: 76  Bit Score: 45.49  E-value: 9.20e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446449406   9 AQDILTAVGGVENIVNVSYDTVRMTIHMHHAIPSTANEVTQIdGVASVDENETQLVIVFNEEVKYVYQQLQLLM 82
Cdd:COG1264    4 AKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
PRK09796 PRK09796
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
 1-91 2.35e-05

PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional


Pssm-ID: 182081  Cd Length: 472  Bit Score: 45.17  E-value: 2.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406   1 MGNKYKDYAQDILTAVGGVENIVNVSYDTVRMTIHMHHAIPSTANEVTQIDGVASVDENETQLVIVFNEEVKYVYQQ-LQ 79
Cdd:PRK09796   1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEvVS 80

                         90
                 ....*....|..
gi 446449406  80 LLMDDAKHQEDT 91
Cdd:PRK09796  81 LLPGDMQPAQPV 92
PTS_IIB_glc cd00212
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
 6-82 2.53e-03

PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation


Pssm-ID: 238130 [Multi-domain]  Cd Length: 78  Bit Score: 35.97  E-value: 2.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406   6 KDYAQDILTAVGGVENIVNVsyDT----VRMTIHMhhaiPSTANE--VTQIDGVASVDENETQL-VIVFNEEVKYVYQQL 78
Cdd:cd00212    1 EQLAKDILEALGGKENIVSL--DHcatrLRLTVKD----ESKVDEaaLKKLGGVKGVVKNGGQYqVIIGPGVADVYKEAI 74


                 ....
gi 446449406  79 QLLM 82
Cdd:cd00212   75 KLLG 78
 
Name Accession Description Interval E-value
NagE COG2190
Phosphotransferase system IIA component [Carbohydrate transport and metabolism];
108-262 1.96e-56

Phosphotransferase system IIA component [Carbohydrate transport and metabolism];


Pssm-ID: 441793 [Multi-domain]  Cd Length: 154  Bit Score: 177.62  E-value: 1.96e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 108 KVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGV 187
Cdd:COG2190    1 KKSKTLTIYAPVSGEVVPLSEVPDPVFASKMMGDGVAIEPTGG-KVVAPVDGTVTSVFPTKHAIGLTSDDGLEVLIHIGI 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446449406 188 NTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADLGKVELTMNEIITTEDVIFKIFK 262
Cdd:COG2190   80 DTVKLNGEGFTVLVKEGDKVKAGDPLIEFDLDAIKAAGYSLITPVVVTNSDEYKSVELTKSGQVKAGDPLLTVKL 154
PTS_EIIA_1 pfam00358
phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;
113-234 3.50e-48

phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1;


Pssm-ID: 459779 [Multi-domain]  Cd Length: 121  Bit Score: 155.61  E-value: 3.50e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  113 ILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGVNTVDL 192
Cdd:pfam00358   1 IEIYSPVSGEVIPLSEVPDPVFSQKMMGDGVAIEPSEG-KVYAPVDGTVTTVFPTKHAIGITTDDGVEVLIHIGIDTVKL 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446449406  193 EGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVI 234
Cdd:pfam00358  80 KGEGFESLVKEGDKVKAGDLLLEFDLEAIKAAGYSTTTPVVV 121
PTS_IIA_glc cd00210
PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 117-239 6.58e-42

PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238128 [Multi-domain]  Cd Length: 124  Bit Score: 139.73  E-value: 6.58e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 117 APIAGRRILLKEVRDSIFREKMVGEGLAIKAhEEFKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGVNTVDLEGKG 196
Cdd:cd00210    3 SPITGEIVPLDQVPDEVFASKMMGDGFAIKP-SDGKVVAPVDGTIVQIFPTKHAIGIESDSGVEILIHIGIDTVKLNGEG 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 446449406 197 FKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSAD 239
Cdd:cd00210   82 FTSHVEEGQRVKQGDKLLEFDLPAIKAAGLDDTTPVIVTNSDE 124
PTS-II-ABC-beta TIGR01995
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ...
 97-257 2.58e-40

PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.


Pssm-ID: 273919 [Multi-domain]  Cd Length: 610  Bit Score: 146.73  E-value: 2.58e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406   97 DTQETEQKAQAKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAhEEFKVIAPFSGKVSMIVPTKHAIGIRSE 176
Cdd:TIGR01995 447 DQEDVVTQEAAALSKDESLYAPVAGEMLPLNEVPDEVFSSGAMGKGIAILP-TEGEVVAPVDGTVTAVFPTKHAIGIRSD 525

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  177 EGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADLGKVELTMNEIITTEDV 256
Cdd:TIGR01995 526 NGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKETVTAGDV 605


                  .
gi 446449406  257 I 257
Cdd:TIGR01995 606 L 606
PTBA TIGR00830
PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside ...
 117-236 7.25e-40

PTS system, glucose subfamily, IIA component; These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. The three-dimensional structures of the IIA and IIB domains of the E. coli glucose permease have been elucidated. IIAglchas a complex b-sandwich structure while IIBglc is a split ab-sandwich with a topology unrelated to the split ab-sandwich structure of HPr. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 273289 [Multi-domain]  Cd Length: 121  Bit Score: 134.30  E-value: 7.25e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  117 APIAGRRILLKEVRDSIFREKMVGEGLAIKAhEEFKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHIGVNTVDLEGKG 196
Cdd:TIGR00830   3 SPISGEIVPLDQVPDEVFASKIVGDGFAILP-TDGKVVAPVDGKIGKIFPTKHAFGIESDNGVEILIHIGIDTVKLNGEG 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 446449406  197 FKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISN 236
Cdd:TIGR00830  82 FTSHVEEGDRVKKGDPLLEFDLKAIKKKGYSITTPVVVTN 121
PRK09824 PRK09824
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
 90-239 2.68e-32

PTS system beta-glucoside-specific transporter subunits IIABC; Provisional


Pssm-ID: 236627 [Multi-domain]  Cd Length: 627  Bit Score: 124.44  E-value: 2.68e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  90 DTNHDAVDTQETEQKAQAKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKH 169
Cdd:PRK09824 456 AKRQPAQVAPQEKTPEVITPPEQGGICSPMTGEVVPLEQVADTTFASGLLGKGIAILPSVG-EVRSPVAGRVASLFATLH 534

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 170 AIGIRSEEGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSAD 239
Cdd:PRK09824 535 AIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDD 604
PRK09439 PRK09439
PTS system glucose-specific transporter subunit; Provisional
 106-262 3.39e-29

PTS system glucose-specific transporter subunit; Provisional


Pssm-ID: 181859 [Multi-domain]  Cd Length: 169  Bit Score: 108.14  E-value: 3.39e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 106 QAKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKVSMIVPTKHAIGIRSEEGVDIVIHI 185
Cdd:PRK09439  14 DKKDTGTIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGN-KMVAPVDGTIGKIFETNHAFSIESDSGVELFVHF 92

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446449406 186 GVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADLGKVELTMNEIITTEDVIFKIFK 262
Cdd:PRK09439  93 GIDTVELKGEGFKRIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTAGETPVIRVKK 169
PRK10255 PRK10255
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
 9-260 4.47e-24

PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional


Pssm-ID: 182338 [Multi-domain]  Cd Length: 648  Bit Score: 101.10  E-value: 4.47e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406   9 AQDILTAVGGVENI--VNVSYDTVRMTIHMHHAIPSTANEVTQIDGVASVDENETQLVI-----VFNEEVKYVYQQLQLl 81
Cdd:PRK10255 393 ATNYIAAVGGTDNLkaIDACITRLRLTVADSARVNDAMCKRLGASGVVKLNKQTIQVIVgakaeSIGDAMKKVVARGPV- 471

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406  82 mddAKHQEDTNHDAVDTQETEQKAQAKVTTPILVkAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEEfKVIAPFSGKV 161
Cdd:PRK10255 472 ---AAASAEATPATAAPVAKPQAVPNAVSIAELV-SPITGDVVALDQVPDEAFASKAVGDGVAVKPTDK-IVVSPAAGTI 546

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406 162 SMIVPTKHAIGIRSEEGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQEQGYNSDVIVVISNSADL- 240
Cdd:PRK10255 547 VKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDDFs 626

                        250       260
                 ....*....|....*....|
gi 446449406 241 GKVELTMNEIITTEDVIFKI 260
Cdd:PRK10255 627 GLIIKAQGHVVAGQTPLYEI 646
PtsG2 COG1264
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
9-82 9.20e-07

Phosphotransferase system IIB components [Carbohydrate transport and metabolism];


Pssm-ID: 440876 [Multi-domain]  Cd Length: 76  Bit Score: 45.49  E-value: 9.20e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446449406   9 AQDILTAVGGVENIVNVSYDTVRMTIHMHHAIPSTANEVTQIdGVASVDENETQLVIVFNEEVKYVYQQLQLLM 82
Cdd:COG1264    4 AKDILEALGGKENIVSVDHCATRLRVTVKDPSKVDEAALKKL-GVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
PRK09796 PRK09796
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
 1-91 2.35e-05

PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional


Pssm-ID: 182081  Cd Length: 472  Bit Score: 45.17  E-value: 2.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406   1 MGNKYKDYAQDILTAVGGVENIVNVSYDTVRMTIHMHHAIPSTANEVTQIDGVASVDENETQLVIVFNEEVKYVYQQ-LQ 79
Cdd:PRK09796   1 MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEvVS 80

                         90
                 ....*....|..
gi 446449406  80 LLMDDAKHQEDT 91
Cdd:PRK09796  81 LLPGDMQPAQPV 92
PTS_IIB_glc cd00212
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
 6-82 2.53e-03

PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation


Pssm-ID: 238130 [Multi-domain]  Cd Length: 78  Bit Score: 35.97  E-value: 2.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446449406   6 KDYAQDILTAVGGVENIVNVsyDT----VRMTIHMhhaiPSTANE--VTQIDGVASVDENETQL-VIVFNEEVKYVYQQL 78
Cdd:cd00212    1 EQLAKDILEALGGKENIVSL--DHcatrLRLTVKD----ESKVDEaaLKKLGGVKGVVKNGGQYqVIIGPGVADVYKEAI 74


                 ....
gi 446449406  79 QLLM 82
Cdd:cd00212   75 KLLG 78
PRK09824 PRK09824
PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
 4-78 2.87e-03

PTS system beta-glucoside-specific transporter subunits IIABC; Provisional


Pssm-ID: 236627 [Multi-domain]  Cd Length: 627  Bit Score: 38.92  E-value: 2.87e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446449406   4 KYKDYAQDILTAVGGVENIVNVSYDTVRMTIHMHHAIPSTANEVTQIDGVASVDENETQLVIVFNEEVKYVYQQL 78
Cdd:PRK09824   2 EYTELAREIVAGVGGADNIVSLMHCATRLRFKLKDNSKAQAEVLKKNPGVIMVVESGGQFQVVIGNHVADVFLAV 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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