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Conserved domains on  [gi|446434294|ref|WP_000512149|]
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MULTISPECIES: GlsB/YeaQ/YmgE family stress response membrane protein [Salmonella]

Protein Classification

GlsB/YeaQ/YmgE family stress response membrane protein( domain architecture ID 10013529)

GlsB/YeaQ/YmgE family stress response membrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10457 PRK10457
hypothetical protein; Provisional
 1-82 9.01e-28

hypothetical protein; Provisional


:

Pssm-ID: 182475  Cd Length: 82  Bit Score: 95.64  E-value: 9.01e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446434294  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKI 80
Cdd:PRK10457  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKI 80


                ..
gi 446434294 81 KS 82
Cdd:PRK10457 81 KS 82
 
Name Accession Description Interval E-value
PRK10457 PRK10457
hypothetical protein; Provisional
 1-82 9.01e-28

hypothetical protein; Provisional


Pssm-ID: 182475  Cd Length: 82  Bit Score: 95.64  E-value: 9.01e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446434294  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKI 80
Cdd:PRK10457  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKI 80


                ..
gi 446434294 81 KS 82
Cdd:PRK10457 81 KS 82
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-81 7.01e-22

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


Pssm-ID: 441862  Cd Length: 85  Bit Score: 80.47  E-value: 7.01e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446434294  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKI 80
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGGLLGIGLVGGFSLGSLIVAVIGAIILLFIYRLI 80


                .
gi 446434294 81 K 81
Cdd:COG2261  81 R 81
Transgly_assoc pfam04226
Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane ...
 33-81 8.81e-05

Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase associated proteins, but no experimental evidence is provided. This family was annotated based on the information in Swiss:P76011.


Pssm-ID: 461230  Cd Length: 49  Bit Score: 36.26  E-value: 8.81e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446434294  33 IILGIVGAVVGGWISTFFGFGkVDGFNFGSFAVAVIGAIVVLLIYRKIK 81
Cdd:pfam04226  1 IILGIVGAFVGGFLFGALGIG-VGGGELAGFIPALIGAVILLFIVRLVR 48
 
Name Accession Description Interval E-value
PRK10457 PRK10457
hypothetical protein; Provisional
 1-82 9.01e-28

hypothetical protein; Provisional


Pssm-ID: 182475  Cd Length: 82  Bit Score: 95.64  E-value: 9.01e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446434294  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKI 80
Cdd:PRK10457  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKI 80


                ..
gi 446434294 81 KS 82
Cdd:PRK10457 81 KS 82
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-81 7.01e-22

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


Pssm-ID: 441862  Cd Length: 85  Bit Score: 80.47  E-value: 7.01e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446434294  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKI 80
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGGLLGIGLVGGFSLGSLIVAVIGAIILLFIYRLI 80


                .
gi 446434294 81 K 81
Cdd:COG2261  81 R 81
Transgly_assoc pfam04226
Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane ...
 33-81 8.81e-05

Transglycosylase associated protein; Bacterial protein, predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase associated proteins, but no experimental evidence is provided. This family was annotated based on the information in Swiss:P76011.


Pssm-ID: 461230  Cd Length: 49  Bit Score: 36.26  E-value: 8.81e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446434294  33 IILGIVGAVVGGWISTFFGFGkVDGFNFGSFAVAVIGAIVVLLIYRKIK 81
Cdd:pfam04226  1 IILGIVGAFVGGFLFGALGIG-VGGGELAGFIPALIGAVILLFIVRLVR 48
PHA03231 PHA03231
glycoprotein BALF4; Provisional
 32-82 5.46e-03

glycoprotein BALF4; Provisional


Pssm-ID: 223014 [Multi-domain]  Cd Length: 829  Bit Score: 33.76  E-value: 5.46e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446434294  32 TIILGIVGAV---VGGwISTFFG--FGkvdGFNFGSFAVAVIgaIVVLLIYRKIKS 82
Cdd:PHA03231 680 NVVSGVAGAVgsiVSG-VISFLKnpFG---GLAIGLLVIAVL--VAVFLAYRRVRR 729
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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