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Conserved domains on  [gi|446419881|ref|WP_000497736|]
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MULTISPECIES: TIGR02391 family protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hypoth_Ymh super family cl09741
Protein of unknown function (Hypoth_ymh); This entry consists of a relatively rare prokaryotic ...
 10-121 2.20e-22

Protein of unknown function (Hypoth_ymh); This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.


The actual alignment was detected with superfamily member pfam09509:

Pssm-ID: 447798  Cd Length: 119  Bit Score: 91.15  E-value: 2.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446419881   10 NNFDAELVEAIGNRLENNQFSDAILAGTKYLTTLLREKGQCEGDGAQLVGTVLGGQSPRIQINSLQSVSEQDEQRGFEAL 89
Cdd:pfam09509   1 RGLHPEVWKYCRAELLAGNYFHAVFEAAKGVEDRVREKTGLTDDGADLMDQAFSAKNPLLAINSLQTESEKSEQKGFMNL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 446419881   90 LRGYYQCIRNPRTHDN-FPDTEDSCMRILIMLD 121
Cdd:pfam09509  81 FEGVFGAIRNPTAHEPkINLSEEEALEILALAS 113
 
Name Accession Description Interval E-value
Hypoth_Ymh pfam09509
Protein of unknown function (Hypoth_ymh); This entry consists of a relatively rare prokaryotic ...
 10-121 2.20e-22

Protein of unknown function (Hypoth_ymh); This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.


Pssm-ID: 430653  Cd Length: 119  Bit Score: 91.15  E-value: 2.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446419881   10 NNFDAELVEAIGNRLENNQFSDAILAGTKYLTTLLREKGQCEGDGAQLVGTVLGGQSPRIQINSLQSVSEQDEQRGFEAL 89
Cdd:pfam09509   1 RGLHPEVWKYCRAELLAGNYFHAVFEAAKGVEDRVREKTGLTDDGADLMDQAFSAKNPLLAINSLQTESEKSEQKGFMNL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 446419881   90 LRGYYQCIRNPRTHDN-FPDTEDSCMRILIMLD 121
Cdd:pfam09509  81 FEGVFGAIRNPTAHEPkINLSEEEALEILALAS 113
hypoth_ymh TIGR02391
TIGR02391 family protein; This family consists of a relatively rare (~ 8 occurrences per 200 ...
 16-121 1.64e-09

TIGR02391 family protein; This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown. [Hypothetical proteins, Domain]


Pssm-ID: 162834  Cd Length: 125  Bit Score: 55.53  E-value: 1.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446419881   16 LVEAIGNRLENNQFSDAILAGTKYLTTLLREKGQCEGDGAQLVGTVLGGQ-SPRIQINSLQSVSEQDEQRGFEALLRGYY 94
Cdd:TIGR02391   5 VLGFCREELLLGNYFHAVFEAVKIVEEKIRELTGDSLDGVELIDQAFSSKnNPKVGGNLLQTEAEQGEQEGLSNLLAGAI 84

                          90       100       110
                  ....*....|....*....|....*....|
gi 446419881   95 QCIRNPRTH---DNFPDTEDSCMRILIMLD 121
Cdd:TIGR02391  85 TGFRNPVAHaprYFIDPNIFDAADALQLAS 114
 
Name Accession Description Interval E-value
Hypoth_Ymh pfam09509
Protein of unknown function (Hypoth_ymh); This entry consists of a relatively rare prokaryotic ...
 10-121 2.20e-22

Protein of unknown function (Hypoth_ymh); This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.


Pssm-ID: 430653  Cd Length: 119  Bit Score: 91.15  E-value: 2.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446419881   10 NNFDAELVEAIGNRLENNQFSDAILAGTKYLTTLLREKGQCEGDGAQLVGTVLGGQSPRIQINSLQSVSEQDEQRGFEAL 89
Cdd:pfam09509   1 RGLHPEVWKYCRAELLAGNYFHAVFEAAKGVEDRVREKTGLTDDGADLMDQAFSAKNPLLAINSLQTESEKSEQKGFMNL 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 446419881   90 LRGYYQCIRNPRTHDN-FPDTEDSCMRILIMLD 121
Cdd:pfam09509  81 FEGVFGAIRNPTAHEPkINLSEEEALEILALAS 113
hypoth_ymh TIGR02391
TIGR02391 family protein; This family consists of a relatively rare (~ 8 occurrences per 200 ...
 16-121 1.64e-09

TIGR02391 family protein; This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown. [Hypothetical proteins, Domain]


Pssm-ID: 162834  Cd Length: 125  Bit Score: 55.53  E-value: 1.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446419881   16 LVEAIGNRLENNQFSDAILAGTKYLTTLLREKGQCEGDGAQLVGTVLGGQ-SPRIQINSLQSVSEQDEQRGFEALLRGYY 94
Cdd:TIGR02391   5 VLGFCREELLLGNYFHAVFEAVKIVEEKIRELTGDSLDGVELIDQAFSSKnNPKVGGNLLQTEAEQGEQEGLSNLLAGAI 84

                          90       100       110
                  ....*....|....*....|....*....|
gi 446419881   95 QCIRNPRTH---DNFPDTEDSCMRILIMLD 121
Cdd:TIGR02391  85 TGFRNPVAHaprYFIDPNIFDAADALQLAS 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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