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Conserved domains on  [gi|446405186|ref|WP_000483041|]
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MULTISPECIES: phage head closure protein [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Phage_H_T_join super family cl11461
Phage head-tail joining protein;
28-104 2.44e-04

Phage head-tail joining protein;


The actual alignment was detected with superfamily member TIGR01563:

Pssm-ID: 472190  Cd Length: 101  Bit Score: 37.34  E-value: 2.44e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446405186   28 ERFVSDKTIKGFMDTPTTSEQLKFHQMSQEYDRNLYVPYDLPISKNNLFEYEGRIFSIeGDSVDQGGQHE-IKLLRLK 104
Cdd:TIGR01563  24 TKWVDYFTLWAAVKPMSGQEFYRAGQEGVEITHVILIRYRKDVTNKMRVIYDGRIYTI-GAVIDPSRTREeLDLLTKE 100
 
Name Accession Description Interval E-value
gp16_SPP1 TIGR01563
phage head-tail adaptor, putative, SPP1 family; This family describes a small protein of about ...
28-104 2.44e-04

phage head-tail adaptor, putative, SPP1 family; This family describes a small protein of about 100 amino acids found in bacteriophage and in bacterial prophage regions. Examples include gp9 of phage HK022 and gp16 of phage SPP1. This minor structural protein is suggested to be a head-tail adaptor protein (although the source of this annotation was not traced during construction of this model). [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273692  Cd Length: 101  Bit Score: 37.34  E-value: 2.44e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446405186   28 ERFVSDKTIKGFMDTPTTSEQLKFHQMSQEYDRNLYVPYDLPISKNNLFEYEGRIFSIeGDSVDQGGQHE-IKLLRLK 104
Cdd:TIGR01563  24 TKWVDYFTLWAAVKPMSGQEFYRAGQEGVEITHVILIRYRKDVTNKMRVIYDGRIYTI-GAVIDPSRTREeLDLLTKE 100
 
Name Accession Description Interval E-value
gp16_SPP1 TIGR01563
phage head-tail adaptor, putative, SPP1 family; This family describes a small protein of about ...
28-104 2.44e-04

phage head-tail adaptor, putative, SPP1 family; This family describes a small protein of about 100 amino acids found in bacteriophage and in bacterial prophage regions. Examples include gp9 of phage HK022 and gp16 of phage SPP1. This minor structural protein is suggested to be a head-tail adaptor protein (although the source of this annotation was not traced during construction of this model). [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273692  Cd Length: 101  Bit Score: 37.34  E-value: 2.44e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446405186   28 ERFVSDKTIKGFMDTPTTSEQLKFHQMSQEYDRNLYVPYDLPISKNNLFEYEGRIFSIeGDSVDQGGQHE-IKLLRLK 104
Cdd:TIGR01563  24 TKWVDYFTLWAAVKPMSGQEFYRAGQEGVEITHVILIRYRKDVTNKMRVIYDGRIYTI-GAVIDPSRTREeLDLLTKE 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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