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Conserved domains on  [gi|446396223|ref|WP_000474078|]
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MULTISPECIES: reactive chlorine resistance periplasmic protein RclB [Escherichia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
peri_RclB NF040474
reactive chlorine resistance periplasmic protein RclB;
1-78 4.03e-35

reactive chlorine resistance periplasmic protein RclB;


:

Pssm-ID: 439701  Cd Length: 78  Bit Score: 113.90  E-value: 4.03e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446396223  1 MFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDAIADMARKYNASSWKVTSMRIDNNSTATAVLYK 78
Cdd:NF040474  1 MFKKTVLFATLLSAPMAFSANAQDKTEVKHVSVSSVSATPSVLEDAIAKLAQKKKASSWKITSMRIDNNSTATAILYK 78
 
Name Accession Description Interval E-value
peri_RclB NF040474
reactive chlorine resistance periplasmic protein RclB;
1-78 4.03e-35

reactive chlorine resistance periplasmic protein RclB;


Pssm-ID: 439701  Cd Length: 78  Bit Score: 113.90  E-value: 4.03e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446396223  1 MFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDAIADMARKYNASSWKVTSMRIDNNSTATAVLYK 78
Cdd:NF040474  1 MFKKTVLFATLLSAPMAFSANAQDKTEVKHVSVSSVSATPSVLEDAIAKLAQKKKASSWKITSMRIDNNSTATAILYK 78
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 31-77 5.17e-08

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 44.44  E-value: 5.17e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446396223  31 ISVSSVSASPTVLEDAIADMARKYNASSWKVTSMR--IDNNSTATAVLY 77
Cdd:pfam07338  7 VSVSGVFGSPSDAEAALSKKADAKGAKSYRIISADepNGGNWHGTAELY 55
 
Name Accession Description Interval E-value
peri_RclB NF040474
reactive chlorine resistance periplasmic protein RclB;
1-78 4.03e-35

reactive chlorine resistance periplasmic protein RclB;


Pssm-ID: 439701  Cd Length: 78  Bit Score: 113.90  E-value: 4.03e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446396223  1 MFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDAIADMARKYNASSWKVTSMRIDNNSTATAVLYK 78
Cdd:NF040474  1 MFKKTVLFATLLSAPMAFSANAQDKTEVKHVSVSSVSATPSVLEDAIAKLAQKKKASSWKITSMRIDNNSTATAILYK 78
YdgH_BhsA-like pfam07338
YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around ...
 31-77 5.17e-08

YdgH/BhsA/McbA-like domain; This domain is found in several Enterobacterial proteins of around 90 residues in length, including E. coli YdgH, YhcN, BhsA and McbA, which play a role in stress response, biofilm formation and pathogenesis. BhsA (also known as ComC) reduces the permeability of the outer membrane to copper and may decrease biofilm formation by repressing cell-cell interaction and cell surface interaction. Members of this entry have one copy of this domain with the exception of YdgH, which has three copies. The function of this domain is unknown, however, it is suggested to be directly involved in host-pathogen interaction.


Pssm-ID: 429417 [Multi-domain]  Cd Length: 55  Bit Score: 44.44  E-value: 5.17e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 446396223  31 ISVSSVSASPTVLEDAIADMARKYNASSWKVTSMR--IDNNSTATAVLY 77
Cdd:pfam07338  7 VSVSGVFGSPSDAEAALSKKADAKGAKSYRIISADepNGGNWHGTAELY 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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