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Conserved domains on  [gi|446371583|ref|WP_000449438|]
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Gp37 family protein [Salmonella enterica]

Protein Classification

Gp37 family protein( domain architecture ID 10560360)

Gp37 family protein similar to Salmonella enterica protein that forms an asymmetrical dodecameric barrel-structure of two six-membered rings one on top of the other

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gp37 pfam09646
Gp37 protein; This protein of 154 residues consists of a unit of helices and beta sheets that ...
 18-148 6.31e-57

Gp37 protein; This protein of 154 residues consists of a unit of helices and beta sheets that crystallizes into a beautiful asymmetrical dodecameric barrel-structure, of two six-membered rings one on top of the other. It is expressed in bacteria but is of viral origin as it is found in phage BcepMu and is probably a pathogenesis factor.


:

Pssm-ID: 430731  Cd Length: 134  Bit Score: 174.06  E-value: 6.31e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446371583   18 NPDMDIH---ISSTDAKVYIPTGQqvtVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISD---AINALDRLRRSL 91
Cdd:pfam09646   1 LPDLDVEyfpESPAEYRLNHPVGA---VLVSYAGSRFGEPEDTDAVVQTRTLQLELTVLLRQLNGrlgALAVLDALRLAL 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446371583   92 GGIELPDCDRPLWLESEKYIGDAANFCRYALDITASTLFIAEQESKDSPLLTVVNYE 148
Cdd:pfam09646  78 GGFRPPDCKRPLWLVSERFLGELDGVWQYALTFTTETLQVEDAEPDDGPLLTQVNYE 134
 
Name Accession Description Interval E-value
Gp37 pfam09646
Gp37 protein; This protein of 154 residues consists of a unit of helices and beta sheets that ...
 18-148 6.31e-57

Gp37 protein; This protein of 154 residues consists of a unit of helices and beta sheets that crystallizes into a beautiful asymmetrical dodecameric barrel-structure, of two six-membered rings one on top of the other. It is expressed in bacteria but is of viral origin as it is found in phage BcepMu and is probably a pathogenesis factor.


Pssm-ID: 430731  Cd Length: 134  Bit Score: 174.06  E-value: 6.31e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446371583   18 NPDMDIH---ISSTDAKVYIPTGQqvtVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISD---AINALDRLRRSL 91
Cdd:pfam09646   1 LPDLDVEyfpESPAEYRLNHPVGA---VLVSYAGSRFGEPEDTDAVVQTRTLQLELTVLLRQLNGrlgALAVLDALRLAL 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446371583   92 GGIELPDCDRPLWLESEKYIGDAANFCRYALDITASTLFIAEQESKDSPLLTVVNYE 148
Cdd:pfam09646  78 GGFRPPDCKRPLWLVSERFLGELDGVWQYALTFTTETLQVEDAEPDDGPLLTQVNYE 134
 
Name Accession Description Interval E-value
Gp37 pfam09646
Gp37 protein; This protein of 154 residues consists of a unit of helices and beta sheets that ...
 18-148 6.31e-57

Gp37 protein; This protein of 154 residues consists of a unit of helices and beta sheets that crystallizes into a beautiful asymmetrical dodecameric barrel-structure, of two six-membered rings one on top of the other. It is expressed in bacteria but is of viral origin as it is found in phage BcepMu and is probably a pathogenesis factor.


Pssm-ID: 430731  Cd Length: 134  Bit Score: 174.06  E-value: 6.31e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446371583   18 NPDMDIH---ISSTDAKVYIPTGQqvtVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISD---AINALDRLRRSL 91
Cdd:pfam09646   1 LPDLDVEyfpESPAEYRLNHPVGA---VLVSYAGSRFGEPEDTDAVVQTRTLQLELTVLLRQLNGrlgALAVLDALRLAL 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446371583   92 GGIELPDCDRPLWLESEKYIGDAANFCRYALDITASTLFIAEQESKDSPLLTVVNYE 148
Cdd:pfam09646  78 GGFRPPDCKRPLWLVSERFLGELDGVWQYALTFTTETLQVEDAEPDDGPLLTQVNYE 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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