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Conserved domains on  [gi|446360649|ref|WP_000438504|]
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MULTISPECIES: phage major capsid protein [Staphylococcus]

Protein Classification

phage major capsid protein( domain architecture ID 10523761)

phage major capsid protein self-assembles to form a capsid for genome packaging

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Phage_capsid pfam05065
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
41-311 1.63e-52

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


:

Pssm-ID: 428287  Cd Length: 272  Bit Score: 173.72  E-value: 1.63e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649   41 NDFTTPILQEVMENSKIMQLGKYEPMEGTEK-KFTFWADKPGAYWVGEGQKI-ETSKATWVNATMRAFKLGVILPVTKEF 118
Cdd:pfam05065   1 PELSTEIIELLREESPIRQLATVIRTSTSGTvRIPVDTGTAEAGWVGETGAIpETDSPTFGQITLPVHKLAAWVPVSREL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  119 LNYTYSQFFEEMKPMIAEAFYKKFDEAGILN--QGNNPFGKsIAQSIEKTNKVIKGDFT--QDNIIDLEALLEDDELEAN 194
Cdd:pfam05065  81 LDDSAIDLEAYLAGRLAEAFARKEDEAFLNGdgDGNQPKGI-LAASTGAVATGKAAAVTgtADNLIDLIYSLPAAYRANA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  195 AFISKTQNRSLLRKIVDpETKERIYD-----RNSDTLDGLPVVNL----KSSNLKRGELITGDFDKLIYGIPQLIEYKID 265
Cdd:pfam05065 160 SFVMNRSTLAALRKLKD-ADGNYLWQpglaaGQPATLLGRPVVESedmvAAGAKPTGDILFGDFSAYIIVDRGGLEIKRL 238
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 446360649  266 EtaqlstvknedgTPVNLFEQDMVALRATMHVALHIADDKAFAKLV 311
Cdd:pfam05065 239 R------------DPYSFFEKDQVGFRATKRVDGAVVDPEAFKVLK 272
 
Name Accession Description Interval E-value
Phage_capsid pfam05065
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
41-311 1.63e-52

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


Pssm-ID: 428287  Cd Length: 272  Bit Score: 173.72  E-value: 1.63e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649   41 NDFTTPILQEVMENSKIMQLGKYEPMEGTEK-KFTFWADKPGAYWVGEGQKI-ETSKATWVNATMRAFKLGVILPVTKEF 118
Cdd:pfam05065   1 PELSTEIIELLREESPIRQLATVIRTSTSGTvRIPVDTGTAEAGWVGETGAIpETDSPTFGQITLPVHKLAAWVPVSREL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  119 LNYTYSQFFEEMKPMIAEAFYKKFDEAGILN--QGNNPFGKsIAQSIEKTNKVIKGDFT--QDNIIDLEALLEDDELEAN 194
Cdd:pfam05065  81 LDDSAIDLEAYLAGRLAEAFARKEDEAFLNGdgDGNQPKGI-LAASTGAVATGKAAAVTgtADNLIDLIYSLPAAYRANA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  195 AFISKTQNRSLLRKIVDpETKERIYD-----RNSDTLDGLPVVNL----KSSNLKRGELITGDFDKLIYGIPQLIEYKID 265
Cdd:pfam05065 160 SFVMNRSTLAALRKLKD-ADGNYLWQpglaaGQPATLLGRPVVESedmvAAGAKPTGDILFGDFSAYIIVDRGGLEIKRL 238
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 446360649  266 EtaqlstvknedgTPVNLFEQDMVALRATMHVALHIADDKAFAKLV 311
Cdd:pfam05065 239 R------------DPYSFFEKDQVGFRATKRVDGAVVDPEAFKVLK 272
gp36 COG4653
Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];
42-311 5.64e-18

Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];


Pssm-ID: 443691  Cd Length: 304  Bit Score: 82.61  E-value: 5.64e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  42 DFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNY 121
Cdd:COG4653   36 EFANEIIEALKEYSPIRQLARVITTSSGSYKIPVSTTGPTAGWVGEGAARETSTPTFGQVTLPAHELYALPKVSQELLDD 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649 122 TYSQFFEEMKPMIAEAFYKKFDEAGILNQGNN-PFG--KSIAQSIEKTNKVIKGDFTQDNIIDLEALLeDDELEANA-FI 197
Cdd:COG4653  116 SAFDLEAWLAEELAEAFARAEEAAFVNGDGTGkPKGilTYATVAAGTVAAGAAGAITADDLIDLIYSL-KAAYRANAvWV 194
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649 198 --SKTQNrsLLRKIVDpETKERIYDRN-----SDTLDGLPVV------NLKSSNlkrGELITGDFDKliygipqliEYKI 264
Cdd:COG4653  195 mnDSTLA--AIRKLKD-GNGRYLWQPGlaagqPATLLGYPVVesedmpDIAAGA---KPIAFGDFSR---------GYLI 259
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 446360649 265 DETAQLsTVKNEdgtpvNLFEQDMVALRATMHVALHIADDKAFAKLV 311
Cdd:COG4653  260 VDRQGL-RVLRD-----PYSAKGQVGFYATKRVGGGVVDPEAIKLLK 300
major_cap_HK97 TIGR01554
phage major capsid protein, HK97 family; This model family represents the major capsid protein ...
42-311 1.41e-14

phage major capsid protein, HK97 family; This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273690 [Multi-domain]  Cd Length: 386  Bit Score: 73.53  E-value: 1.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649   42 DFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNY 121
Cdd:TIGR01554 120 EFSTEIIELLKEYSPLRQLATVIPVSSGSITIPVDAGTPEAGWVGEGAARPESDPTFGQVELPVKKLAAIIPISNELLDD 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  122 TYSQFFEEMKPMIAEAFYKKFDEAgILNQ--GNNPFGksIAQSIEKTNKVIKGD---FTQDNIIDLEALLeDDELEANA- 195
Cdd:TIGR01554 200 SAVDLEAYLADELAEAFARAENAA-ILNGdgTGKPKG--ILTYAAVGKVVTTGAagtITADDLIDLIYSL-DPAYRANAv 275
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  196 FI--SKTQNrsLLRKIVD----PETKERIYDRNSDTLDGLPVV---NLKSSNLKRGELITGDFDKLiygipqlieYKIDE 266
Cdd:TIGR01554 276 WVmnRSTLA--ALRKLKDgngrYLWQPGLTAGQPATLLGRPVVeteDMPDVAAGAKPILFGDFSRG---------YLIVD 344
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 446360649  267 TAQLSTvkneDGTPVNLFEQDMVALRATMHVALHIADDKAFAKLV 311
Cdd:TIGR01554 345 RKGMTI----RVLRDPYTEKDQVGFRATKRVDGKVVDPEAIKLLK 385
 
Name Accession Description Interval E-value
Phage_capsid pfam05065
Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.
41-311 1.63e-52

Phage capsid family; Family of bacteriophage hypothetical proteins and capsid proteins.


Pssm-ID: 428287  Cd Length: 272  Bit Score: 173.72  E-value: 1.63e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649   41 NDFTTPILQEVMENSKIMQLGKYEPMEGTEK-KFTFWADKPGAYWVGEGQKI-ETSKATWVNATMRAFKLGVILPVTKEF 118
Cdd:pfam05065   1 PELSTEIIELLREESPIRQLATVIRTSTSGTvRIPVDTGTAEAGWVGETGAIpETDSPTFGQITLPVHKLAAWVPVSREL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  119 LNYTYSQFFEEMKPMIAEAFYKKFDEAGILN--QGNNPFGKsIAQSIEKTNKVIKGDFT--QDNIIDLEALLEDDELEAN 194
Cdd:pfam05065  81 LDDSAIDLEAYLAGRLAEAFARKEDEAFLNGdgDGNQPKGI-LAASTGAVATGKAAAVTgtADNLIDLIYSLPAAYRANA 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  195 AFISKTQNRSLLRKIVDpETKERIYD-----RNSDTLDGLPVVNL----KSSNLKRGELITGDFDKLIYGIPQLIEYKID 265
Cdd:pfam05065 160 SFVMNRSTLAALRKLKD-ADGNYLWQpglaaGQPATLLGRPVVESedmvAAGAKPTGDILFGDFSAYIIVDRGGLEIKRL 238
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 446360649  266 EtaqlstvknedgTPVNLFEQDMVALRATMHVALHIADDKAFAKLV 311
Cdd:pfam05065 239 R------------DPYSFFEKDQVGFRATKRVDGAVVDPEAFKVLK 272
gp36 COG4653
Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];
42-311 5.64e-18

Predicted phage phi-C31 gp36 major capsid-like protein [Mobilome: prophages, transposons];


Pssm-ID: 443691  Cd Length: 304  Bit Score: 82.61  E-value: 5.64e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  42 DFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNY 121
Cdd:COG4653   36 EFANEIIEALKEYSPIRQLARVITTSSGSYKIPVSTTGPTAGWVGEGAARETSTPTFGQVTLPAHELYALPKVSQELLDD 115
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649 122 TYSQFFEEMKPMIAEAFYKKFDEAGILNQGNN-PFG--KSIAQSIEKTNKVIKGDFTQDNIIDLEALLeDDELEANA-FI 197
Cdd:COG4653  116 SAFDLEAWLAEELAEAFARAEEAAFVNGDGTGkPKGilTYATVAAGTVAAGAAGAITADDLIDLIYSL-KAAYRANAvWV 194
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649 198 --SKTQNrsLLRKIVDpETKERIYDRN-----SDTLDGLPVV------NLKSSNlkrGELITGDFDKliygipqliEYKI 264
Cdd:COG4653  195 mnDSTLA--AIRKLKD-GNGRYLWQPGlaagqPATLLGYPVVesedmpDIAAGA---KPIAFGDFSR---------GYLI 259
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 446360649 265 DETAQLsTVKNEdgtpvNLFEQDMVALRATMHVALHIADDKAFAKLV 311
Cdd:COG4653  260 VDRQGL-RVLRD-----PYSAKGQVGFYATKRVGGGVVDPEAIKLLK 300
major_cap_HK97 TIGR01554
phage major capsid protein, HK97 family; This model family represents the major capsid protein ...
42-311 1.41e-14

phage major capsid protein, HK97 family; This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273690 [Multi-domain]  Cd Length: 386  Bit Score: 73.53  E-value: 1.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649   42 DFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNY 121
Cdd:TIGR01554 120 EFSTEIIELLKEYSPLRQLATVIPVSSGSITIPVDAGTPEAGWVGEGAARPESDPTFGQVELPVKKLAAIIPISNELLDD 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  122 TYSQFFEEMKPMIAEAFYKKFDEAgILNQ--GNNPFGksIAQSIEKTNKVIKGD---FTQDNIIDLEALLeDDELEANA- 195
Cdd:TIGR01554 200 SAVDLEAYLADELAEAFARAENAA-ILNGdgTGKPKG--ILTYAAVGKVVTTGAagtITADDLIDLIYSL-DPAYRANAv 275
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446360649  196 FI--SKTQNrsLLRKIVD----PETKERIYDRNSDTLDGLPVV---NLKSSNLKRGELITGDFDKLiygipqlieYKIDE 266
Cdd:TIGR01554 276 WVmnRSTLA--ALRKLKDgngrYLWQPGLTAGQPATLLGRPVVeteDMPDVAAGAKPILFGDFSRG---------YLIVD 344
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 446360649  267 TAQLSTvkneDGTPVNLFEQDMVALRATMHVALHIADDKAFAKLV 311
Cdd:TIGR01554 345 RKGMTI----RVLRDPYTEKDQVGFRATKRVDGKVVDPEAIKLLK 385
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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