MULTISPECIES: helix-turn-helix domain-containing protein [Staphylococcus]
helix-turn-helix domain-containing protein( domain architecture ID 11443570)
helix-turn-helix domain-containing protein such as an XRE (Xenobiotic Response Element) family transcriptional regulator
List of domain hits
Name | Accession | Description | Interval | E-value | ||
HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
4-64 | 2.51e-13 | ||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; : Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 60.01 E-value: 2.51e-13
|
||||||
Name | Accession | Description | Interval | E-value | ||
HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
4-64 | 2.51e-13 | ||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 60.01 E-value: 2.51e-13
|
||||||
HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
11-68 | 4.45e-12 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 56.02 E-value: 4.45e-12
|
||||||
HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
13-64 | 4.03e-11 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 53.68 E-value: 4.03e-11
|
||||||
HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
14-64 | 2.03e-09 | ||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 49.08 E-value: 2.03e-09
|
||||||
lysogeny_AimR | NF038310 | AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ... |
14-43 | 6.47e-03 | ||
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny. Pssm-ID: 468467 Cd Length: 363 Bit Score: 34.43 E-value: 6.47e-03
|
||||||
Name | Accession | Description | Interval | E-value | ||
HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
4-64 | 2.51e-13 | ||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 60.01 E-value: 2.51e-13
|
||||||
HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
11-68 | 4.45e-12 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 56.02 E-value: 4.45e-12
|
||||||
HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
13-64 | 4.03e-11 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 53.68 E-value: 4.03e-11
|
||||||
XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
7-64 | 7.94e-11 | ||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 53.31 E-value: 7.94e-11
|
||||||
HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
14-64 | 2.03e-09 | ||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 49.08 E-value: 2.03e-09
|
||||||
YozG | COG3655 | DNA-binding transcriptional regulator, XRE family [Transcription]; |
13-63 | 1.02e-07 | ||
DNA-binding transcriptional regulator, XRE family [Transcription]; Pssm-ID: 442872 [Multi-domain] Cd Length: 69 Bit Score: 45.13 E-value: 1.02e-07
|
||||||
HTH_26 | pfam13443 | Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to ... |
13-63 | 1.10e-07 | ||
Cro/C1-type HTH DNA-binding domain; This is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433211 [Multi-domain] Cd Length: 63 Bit Score: 44.84 E-value: 1.10e-07
|
||||||
AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
10-62 | 2.64e-07 | ||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 45.01 E-value: 2.64e-07
|
||||||
aMBF1 | COG1813 | Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ... |
10-64 | 3.65e-07 | ||
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis]; Pssm-ID: 441418 [Multi-domain] Cd Length: 70 Bit Score: 43.77 E-value: 3.65e-07
|
||||||
YdaS | COG4197 | DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]; |
25-53 | 7.92e-05 | ||
DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily [Transcription]; Pssm-ID: 443351 Cd Length: 68 Bit Score: 37.58 E-value: 7.92e-05
|
||||||
VapI | COG3093 | Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense ... |
9-43 | 3.46e-04 | ||
Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain [Defense mechanisms]; Pssm-ID: 442327 [Multi-domain] Cd Length: 87 Bit Score: 36.33 E-value: 3.46e-04
|
||||||
HTH_31 | pfam13560 | Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
14-64 | 6.11e-04 | ||
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 35.20 E-value: 6.11e-04
|
||||||
YdaS_antitoxin | pfam15943 | Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family ... |
25-47 | 6.16e-04 | ||
Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT; YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254. Pssm-ID: 435033 Cd Length: 65 Bit Score: 35.40 E-value: 6.16e-04
|
||||||
COG3398 | COG3398 | Predicted transcriptional regulator, contains two HTH domains [Transcription]; |
1-40 | 6.60e-04 | ||
Predicted transcriptional regulator, contains two HTH domains [Transcription]; Pssm-ID: 442625 [Multi-domain] Cd Length: 159 Bit Score: 36.78 E-value: 6.60e-04
|
||||||
HTH_19 | pfam12844 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ... |
12-68 | 1.51e-03 | ||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains. Pssm-ID: 463728 [Multi-domain] Cd Length: 64 Bit Score: 34.19 E-value: 1.51e-03
|
||||||
COG5606 | COG5606 | Predicted DNA-binding protein, XRE-type HTH domain [General function prediction only]; |
2-41 | 1.77e-03 | ||
Predicted DNA-binding protein, XRE-type HTH domain [General function prediction only]; Pssm-ID: 444337 Cd Length: 105 Bit Score: 34.86 E-value: 1.77e-03
|
||||||
YiaG | COG2944 | DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; |
22-50 | 2.54e-03 | ||
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; Pssm-ID: 442187 [Multi-domain] Cd Length: 64 Bit Score: 33.75 E-value: 2.54e-03
|
||||||
HTH_AsnC-type | pfam13404 | AsnC-type helix-turn-helix domain; |
7-53 | 4.10e-03 | ||
AsnC-type helix-turn-helix domain; Pssm-ID: 433180 [Multi-domain] Cd Length: 41 Bit Score: 32.73 E-value: 4.10e-03
|
||||||
Spo0J | COG1475 | Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, ... |
14-41 | 4.60e-03 | ||
Chromosome segregation protein Spo0J, contains ParB-like nuclease domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 441084 [Multi-domain] Cd Length: 241 Bit Score: 34.96 E-value: 4.60e-03
|
||||||
lysogeny_AimR | NF038310 | AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ... |
14-43 | 6.47e-03 | ||
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny. Pssm-ID: 468467 Cd Length: 363 Bit Score: 34.43 E-value: 6.47e-03
|
||||||
HTH_ASNC | smart00344 | helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ... |
7-57 | 7.80e-03 | ||
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli) Pssm-ID: 214628 [Multi-domain] Cd Length: 108 Bit Score: 33.26 E-value: 7.80e-03
|
||||||
Blast search parameters | ||||
|