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Conserved domains on  [gi|446348509|ref|WP_000426364|]
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MULTISPECIES: CII family transcriptional regulator [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_CII super family cl05027
Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII ...
 19-52 2.49e-04

Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.


The actual alignment was detected with superfamily member pfam05269:

Pssm-ID: 398780  Cd Length: 79  Bit Score: 36.89  E-value: 2.49e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446348509   19 IESVLLNRLASVGQKSYAEHMGISESTVSRRKAE 52
Cdd:pfam05269  10 IESDLLNNIATLGQRKLAKAIGCHESQISRWKTD 43
 
Name Accession Description Interval E-value
Phage_CII pfam05269
Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII ...
 19-52 2.49e-04

Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.


Pssm-ID: 398780  Cd Length: 79  Bit Score: 36.89  E-value: 2.49e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446348509   19 IESVLLNRLASVGQKSYAEHMGISESTVSRRKAE 52
Cdd:pfam05269  10 IESDLLNNIATLGQRKLAKAIGCHESQISRWKTD 43
PRK07408 PRK07408
RNA polymerase sigma factor SigF; Reviewed
 19-49 4.28e-03

RNA polymerase sigma factor SigF; Reviewed


Pssm-ID: 180965 [Multi-domain]  Cd Length: 256  Bit Score: 34.90  E-value: 4.28e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 446348509  19 IESVLLNRLAsvgQKSYAEHMGISESTVSRR 49
Cdd:PRK07408 212 LEFVFLHDLT---QKEAAERLGISPVTVSRR 239
 
Name Accession Description Interval E-value
Phage_CII pfam05269
Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII ...
 19-52 2.49e-04

Bacteriophage CII protein; This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.


Pssm-ID: 398780  Cd Length: 79  Bit Score: 36.89  E-value: 2.49e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446348509   19 IESVLLNRLASVGQKSYAEHMGISESTVSRRKAE 52
Cdd:pfam05269  10 IESDLLNNIATLGQRKLAKAIGCHESQISRWKTD 43
PRK07408 PRK07408
RNA polymerase sigma factor SigF; Reviewed
 19-49 4.28e-03

RNA polymerase sigma factor SigF; Reviewed


Pssm-ID: 180965 [Multi-domain]  Cd Length: 256  Bit Score: 34.90  E-value: 4.28e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 446348509  19 IESVLLNRLAsvgQKSYAEHMGISESTVSRR 49
Cdd:PRK07408 212 LEFVFLHDLT---QKEAAERLGISPVTVSRR 239
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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