|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
158-589 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 530.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 158 ISKIFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESNFTHG--HMQHIVSWDDKSEL 233
Cdd:COG3829 9 LEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTelIPNSPLLEVLKTGkpVTGVIQKTGGKGKT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 234 IIGQLHNI--QGRQLFLMAFHQSHTSFS-----------VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300
Cdd:COG3829 89 VIVTAIPIfeDGEVIGAVETFRDITELKrlerklreeelERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380
Cdd:COG3829 169 ESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIGEMPLS 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460
Cdd:COG3829 249 LQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLE 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 461 LHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVpSGEVIDSTLLPPNLLNNGTTEQsdvtevSEAHLSL 540
Cdd:COG3829 329 KFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLS-EGDVITPEHLPEYLLEEAEAAS------AAEEGSL 401
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 446339952 541 DDaggtALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589
Cdd:COG3829 402 KE----ALEEVEKELIEEALEKTGGnKSKAAKALGISRSTLYRKLKKYGI 447
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
102-587 |
6.44e-120 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 366.91 E-value: 6.44e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 102 PVILQDRCVGVIsliavtheQQEHISD----NLREFSDYVRHIstifvsklledqgpgdniskifatmIDNMDQGVLVVD 177
Cdd:NF041552 105 PVLENGKVIGVI--------RQEDIRDyfymKLEEMGETLKHI-------------------------LDNIHEAVCVID 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 178 DESRVQFVNQTALKTLGVVQNNIIGKPIR-FRPLTF----------ESN------------------FTHGHMQHIVSWD 228
Cdd:NF041552 152 KEGIVILWNKSAEKLYGVKSEEIVGKPLEeFFPNALllkvlktkkpIENvyhspkegsyviisavpiFINGEFIGVVSTD 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 229 -DKSELII--GQLHNIQGRQLFL-MAFHQ-SHTSFSvanapdephieQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303
Cdd:NF041552 232 rDITEVKNlsKELEKAKEKLEYLeEEVKKiSEDSFG-----------KIIGKSKKIIKKIEIAKQVAKTNSSVLITGESG 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 304 TGKEVVARAIHKLSGRRNkPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383
Cdd:NF041552 301 TGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463
Cdd:NF041552 380 KLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERKEDIPLLINYFLKEIC 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEVIDSTLLPPNLLNNGTTEqsdvtEVSEAHLSLDDA 543
Cdd:NF041552 460 KENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLV-VLSKNGTITKDSIPEYILESVKKK-----EDEEGDYPLDLN 533
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 446339952 544 ggTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKY 587
Cdd:NF041552 534 --KAVEKLEIDTIKKALEMSNgNKAKAAKLLNIPRSTLYYKLKQY 576
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
272-440 |
1.09e-106 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 317.81 E-value: 1.09e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 352 ASANGKtGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431
Cdd:pfam00158 81 ADSDRK-GLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 446339952 432 YRLNVIPIT 440
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
272-585 |
1.09e-105 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 326.31 E-value: 1.09e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 352 AsANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431
Cdd:TIGR01818 216 A-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLF 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEVID 511
Cdd:TIGR01818 295 HRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLT-VMASGDEVL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 512 STLLPPNLLNNGT-------TEQSDVTEVSEAHLSLDDAGGT------ALEEMEKQMIREALSRHNSKKQ-VADELGIGI 577
Cdd:TIGR01818 374 VSDLPAELALTGRpasapdsDGQDSWDEALEAWAKQALSRGEqglldrALPEFERPLLEAALQHTRGHKQeAAALLGWGR 453
|
....*...
gi 446339952 578 ATLYRKIK 585
Cdd:TIGR01818 454 NTLTRKLK 461
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
253-582 |
8.76e-100 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 312.49 E-value: 8.76e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 253 QSHTSFSVANAPDEPHIEqLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332
Cdd:PRK05022 171 LPQDVAEFLRQEALKEGE-MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAAL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 333 PEQLLESELFGYVKGAFTGASANgKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412
Cdd:PRK05022 250 PESLAESELFGHVKGAFTGAISN-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAA 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG--SVypGIAPDVVEILRKHRWPGNL 490
Cdd:PRK05022 329 TNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGlrSL--RLSPAAQAALLAYDWPGNV 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 491 RELsnlmEYLVN--VV------PSGEV-IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDaggtALEEMEKQMIREALS 561
Cdd:PRK05022 407 REL----EHVISraALlarargAGRIVtLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLRE----ATEAFQRQLIRQALA 478
|
330 340
....*....|....*....|..
gi 446339952 562 RHNSK-KQVADELGIGIATLYR 582
Cdd:PRK05022 479 QHQGNwAAAARALELDRANLHR 500
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
277-443 |
4.27e-25 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 101.45 E-value: 4.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 277 RVMRQLKRLISRiaPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKgaftgasANG 356
Cdd:cd00009 5 EAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL-------VRL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIgasspIQVDIRIISATNQNLaqfiaEGKFREDLFYRLNV 436
Cdd:cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDRLDI 145
|
....*..
gi 446339952 437 IpITLPP 443
Cdd:cd00009 146 R-IVIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
292-414 |
1.31e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 62.78 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS----ANGKTGLIQAANTG 367
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrLRLALALARKLKPD 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 446339952 368 TLFLDEIGDMPLMLQAKLLRAIEAREILpigASSPIQVDIRIISATN 414
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLL---LLLKSEKNLTVILTTN 124
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
12-116 |
3.31e-04 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 41.21 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 12 QIQPTIQRFARMLASVLQLE---VEIVDENLCR----VAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLC 84
Cdd:smart00065 1 DLEELLQTILEELRQLLGADrvlIYLVDENDRGelvlVAADGLTLPTLGIRFPLDEGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110
....*....|....*....|....*....|..
gi 446339952 85 EGCDSKENCREKAFLGTPVILQDRCVGVISLI 116
Cdd:smart00065 81 AEDLLGRYQGVRSFLAVPLVADGELVGVLALH 112
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
158-589 |
0e+00 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 530.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 158 ISKIFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIR--FRPLTFESNFTHG--HMQHIVSWDDKSEL 233
Cdd:COG3829 9 LEEELEAILDSLDDGIIVVDADGRITYVNRAAERILGLPREEVIGKNVTelIPNSPLLEVLKTGkpVTGVIQKTGGKGKT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 234 IIGQLHNI--QGRQLFLMAFHQSHTSFS-----------VANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300
Cdd:COG3829 89 VIVTAIPIfeDGEVIGAVETFRDITELKrlerklreeelERGLSAKYTFDDIIGKSPAMKELLELAKRVAKSDSTVLILG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380
Cdd:COG3829 169 ESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAFTGAKKGGKPGLFELADGGTLFLDEIGEMPLS 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460
Cdd:COG3829 249 LQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFREDLYYRLNVIPIHIPPLRERKEDIPLLAEHFLE 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 461 LHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVpSGEVIDSTLLPPNLLNNGTTEQsdvtevSEAHLSL 540
Cdd:COG3829 329 KFNKKYGKNIKGISPEALELLLAYDWPGNVRELENVIERAVVLS-EGDVITPEHLPEYLLEEAEAAS------AAEEGSL 401
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 446339952 541 DDaggtALEEMEKQMIREALSRHNS-KKQVADELGIGIATLYRKIKKYEL 589
Cdd:COG3829 402 KE----ALEEVEKELIEEALEKTGGnKSKAAKALGISRSTLYRKLKKYGI 447
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
166-587 |
1.17e-146 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 437.41 E-value: 1.17e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 166 IDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIrfrpltfeSNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQ 245
Cdd:COG3284 222 LGSLSEGLLAFDEDGRIVAANRAARRLLGLADAALLGRPL--------EELFGLDLEALPDGARRAPASPRPLRLRDGRR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 246 LFLMAF---HQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNK 322
Cdd:COG3284 294 LGALLRlrpARRAARAAPAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADG 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 323 PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSP 402
Cdd:COG3284 374 PFVAVNCAAIPEELIESELFGYEPGAFTGARRKGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKP 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 403 IQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERqEDIELLVHYFLHLHTRRLGSVYpgIAPDVVEILR 482
Cdd:COG3284 454 IPVDVRLIAATHRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLRELAAGRGPLR--LSPEALALLA 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 483 KHRWPGNLRELSNLMEYLVNVVPsGEVIDSTLLPPnllnngtteqsDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSR 562
Cdd:COG3284 531 AYPWPGNVRELRNVLRTALALAD-GGVITVEDLPD-----------ELRAELAAAAPAAAAPLTSLEEAERDAILRALRA 598
|
410 420
....*....|....*....|....*.
gi 446339952 563 HNSKK-QVADELGIGIATLYRKIKKY 587
Cdd:COG3284 599 CGGNVsAAARALGISRSTLYRKLKRY 624
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
270-587 |
2.50e-138 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 408.58 E-value: 2.50e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 270 EQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAF 349
Cdd:COG2204 131 SGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAF 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 350 TGASANgKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRED 429
Cdd:COG2204 211 TGAVAR-RIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFRED 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 430 LFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPgIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEV 509
Cdd:COG2204 290 LYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKPVK-LSPEALEALLAYDWPGNVRELENVIERAV-ILADGEV 367
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446339952 510 IDSTLLPpnllnngtteqsdvtevseahlslddaggTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKY 587
Cdd:COG2204 368 ITAEDLP-----------------------------EALEEVERELIERALEETGgNVSRAAELLGISRRTLYRKLKKY 417
|
|
| TF_PrdR |
NF041552 |
sigma-54 dependent transcriptional regulator PrdR; |
102-587 |
6.44e-120 |
|
sigma-54 dependent transcriptional regulator PrdR;
Pssm-ID: 469437 [Multi-domain] Cd Length: 577 Bit Score: 366.91 E-value: 6.44e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 102 PVILQDRCVGVIsliavtheQQEHISD----NLREFSDYVRHIstifvsklledqgpgdniskifatmIDNMDQGVLVVD 177
Cdd:NF041552 105 PVLENGKVIGVI--------RQEDIRDyfymKLEEMGETLKHI-------------------------LDNIHEAVCVID 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 178 DESRVQFVNQTALKTLGVVQNNIIGKPIR-FRPLTF----------ESN------------------FTHGHMQHIVSWD 228
Cdd:NF041552 152 KEGIVILWNKSAEKLYGVKSEEIVGKPLEeFFPNALllkvlktkkpIENvyhspkegsyviisavpiFINGEFIGVVSTD 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 229 -DKSELII--GQLHNIQGRQLFL-MAFHQ-SHTSFSvanapdephieQLVGECRVMRQLKRLISRIAPSPSSVMVVGESG 303
Cdd:NF041552 232 rDITEVKNlsKELEKAKEKLEYLeEEVKKiSEDSFG-----------KIIGKSKKIIKKIEIAKQVAKTNSSVLITGESG 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 304 TGKEVVARAIHKLSGRRNkPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQA 383
Cdd:NF041552 301 TGKEVFARAIHQASGRKG-PFVPVNCSAIPEELFESEFFGYEEGAFTGALKKGKIGKFELANNGTLFLDEIGDMPLSMQA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 384 KLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHT 463
Cdd:NF041552 380 KLLRVLQEKQVRRVGGEKYIKINVRIISATNKDLKKMVKEGKFREDLYYRLNVVEIELPPLRERKEDIPLLINYFLKEIC 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 464 RRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEVIDSTLLPPNLLNNGTTEqsdvtEVSEAHLSLDDA 543
Cdd:NF041552 460 KENNKEIPKIDKEVYDILQNYKWKGNIRELKNTIEHLV-VLSKNGTITKDSIPEYILESVKKK-----EDEEGDYPLDLN 533
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 446339952 544 ggTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKY 587
Cdd:NF041552 534 --KAVEKLEIDTIKKALEMSNgNKAKAAKLLNIPRSTLYYKLKQY 576
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
272-440 |
1.09e-106 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 317.81 E-value: 1.09e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 352 ASANGKtGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431
Cdd:pfam00158 81 ADSDRK-GLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLY 159
|
....*....
gi 446339952 432 YRLNVIPIT 440
Cdd:pfam00158 160 YRLNVIPIE 168
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
272-585 |
1.09e-105 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 326.31 E-value: 1.09e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 352 AsANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431
Cdd:TIGR01818 216 A-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLF 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEVID 511
Cdd:TIGR01818 295 HRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLT-VMASGDEVL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 512 STLLPPNLLNNGT-------TEQSDVTEVSEAHLSLDDAGGT------ALEEMEKQMIREALSRHNSKKQ-VADELGIGI 577
Cdd:TIGR01818 374 VSDLPAELALTGRpasapdsDGQDSWDEALEAWAKQALSRGEqglldrALPEFERPLLEAALQHTRGHKQeAAALLGWGR 453
|
....*...
gi 446339952 578 ATLYRKIK 585
Cdd:TIGR01818 454 NTLTRKLK 461
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
269-589 |
7.37e-102 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 315.92 E-value: 7.37e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348
Cdd:TIGR02915 138 LRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGA 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 349 FTGAsANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428
Cdd:TIGR02915 218 FTGA-VKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFRE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE 508
Cdd:TIGR02915 297 DLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQ 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 509 VIDSTLlppnllnnGTTEQSDVTEVSEAHLSLddaggtALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKY 587
Cdd:TIGR02915 377 ITAEDL--------GLDARERAETPLEVNLRE------VRERAEREAVRKAIARVDgNIARAAELLGITRPTLYDLMKKH 442
|
..
gi 446339952 588 EL 589
Cdd:TIGR02915 443 GI 444
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
253-582 |
8.76e-100 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 312.49 E-value: 8.76e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 253 QSHTSFSVANAPDEPHIEqLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAI 332
Cdd:PRK05022 171 LPQDVAEFLRQEALKEGE-MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAAL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 333 PEQLLESELFGYVKGAFTGASANgKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISA 412
Cdd:PRK05022 250 PESLAESELFGHVKGAFTGAISN-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAA 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 413 TNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG--SVypGIAPDVVEILRKHRWPGNL 490
Cdd:PRK05022 329 TNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGlrSL--RLSPAAQAALLAYDWPGNV 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 491 RELsnlmEYLVN--VV------PSGEV-IDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDaggtALEEMEKQMIREALS 561
Cdd:PRK05022 407 REL----EHVISraALlarargAGRIVtLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLRE----ATEAFQRQLIRQALA 478
|
330 340
....*....|....*....|..
gi 446339952 562 RHNSK-KQVADELGIGIATLYR 582
Cdd:PRK05022 479 QHQGNwAAAARALELDRANLHR 500
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
250-586 |
3.64e-99 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 312.04 E-value: 3.64e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 250 AFHQ----------SHTSFSVANAPDEPH-IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHK--- 315
Cdd:PRK15424 188 AFEDaldmtrmtlrHNTHYATRNALRTRYvLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHReyf 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 316 -----LSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIE 390
Cdd:PRK15424 268 arhdaRQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 391 AREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHlhtRRLGSVY 470
Cdd:PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK---QSLAALS 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 471 PGIAPDVVEILRKH-------RWPGNLRELSNLMEYLVnVVPSGEVIDStlLPPNLLNNGTTEQSdvtevseahlslDDA 543
Cdd:PRK15424 425 APFSAALRQGLQQCetlllhyDWPGNVRELRNLMERLA-LFLSVEPTPD--LTPQFLQLLLPELA------------RES 489
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 446339952 544 GGTALEEMEKQMIREALSRHNSKKQVADE-LGIGIATLYRKIKK 586
Cdd:PRK15424 490 AKTPAPRLLAATLQQALERFNGDKTAAANyLGISRTTLWRRLKA 533
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
162-587 |
8.97e-97 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 304.80 E-value: 8.97e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 162 FATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPI----------------RFRPLTFESNFtHGH---MQ 222
Cdd:COG3283 82 LDALLEALPDPVFSIDLKGKIELANPAALSLLGLSEEELIGQPLsellkgfnfsrwlesnEPRPQSERVVI-NGQdylAD 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 223 ----HIVSWDDKSELIIG--QLHNIQ--GRQLflMAFHQSHTSfsvanapdepHIEQLVGECRVMRQLKRLISRIAPSPS 294
Cdd:COG3283 161 ilpiYLPDEEGKSILAGAvvTLKSAArlGEQL--QALQVNDDS----------GFDHIVASSPKMRQVIRQAKKMAMLDA 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 295 SVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFtGASANGKTGLIQAANTGTLFLDEI 374
Cdd:COG3283 229 PLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF-GNAREGKKGLFEQANGGTVFLDEI 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 375 GDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELL 454
Cdd:COG3283 308 GEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFREDLYYRLNVLTLTLPPLRERKSDILPL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 455 VHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnvvpsgevidsTLLPPNLLnngTTEQSDVTEVS 534
Cdd:COG3283 388 AEHFVARFSQQLGRPRPRLSPDLVDFLQSYPWPGNVRQLENALYRAV-----------SLLEGDEL---TPEDLQLPEYA 453
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 535 EAHLSLDDAGGTALEEMEKQMIREALSR----HNSKKQVADELGI---GIAtlyRKIKKY 587
Cdd:COG3283 454 ASAGLLDDLLEGSLDEIVKRFERSLLRRlypsYPSTRKLAKRLGVshtAIA---NKLREY 510
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
279-587 |
2.71e-95 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 299.07 E-value: 2.71e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 279 MRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGASANgKT 358
Cdd:PRK11361 152 MMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL-RQ 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 359 GLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIP 438
Cdd:PRK11361 231 GLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIH 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 439 ITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEVIDSTLLPPN 518
Cdd:PRK11361 311 LILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAV-VMNSGPIIFSEDLPPQ 389
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446339952 519 LlnngtteQSDVTEVSEAHLSLDdaGGTALEEM----EKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKY 587
Cdd:PRK11361 390 I-------RQPVCNAGEVKTAPV--GERNLKEEikrvEKRIIMEVLEQQeGNRTRTALMLGISRRALMYKLQEY 454
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
269-586 |
4.57e-95 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 301.01 E-value: 4.57e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348
Cdd:TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGA 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 349 FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428
Cdd:TIGR02329 291 FTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 429 DLFYRLNVIPITLPPLRERQEDI-----ELLVHYFLHLHTRRLGSVYPGIAPdVVEILRKHRWPGNLRELSNLMEYL--- 500
Cdd:TIGR02329 371 DLFYRLSILRIALPPLRERPGDIlplaaEYLVQAAAALRLPDSEAAAQVLAG-VADPLQRYPWPGNVRELRNLVERLale 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 501 VNVVPSGEvidstlLPPNLLNNGTTEQSDvtEVSEAHLSLDDAGGTALEEMEkqMIREALSRHNSKKQ-VADELGIGIAT 579
Cdd:TIGR02329 450 LSAMPAGA------LTPDVLRALAPELAE--ASGKGKTSALSLRERSRVEAL--AVRAALERFGGDRDaAAKALGISRTT 519
|
....*..
gi 446339952 580 LYRKIKK 586
Cdd:TIGR02329 520 LWRRLKA 526
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
272-498 |
4.08e-86 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 277.75 E-value: 4.08e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351
Cdd:TIGR01817 198 IIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTG 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 352 ASANGKtGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431
Cdd:TIGR01817 278 AIAQRK-GRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446339952 432 YRLNVIPITLPPLRERQEDIELLVHYFL----HLHTRRLgsvypGIAPDVVEILRKHRWPGNLRELSNLME 498
Cdd:TIGR01817 357 YRINVVPIFLPPLRERREDIPLLAEAFLekfnRENGRPL-----TITPSAIRVLMSCKWPGNVRELENCLE 422
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
262-586 |
7.77e-86 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 275.21 E-value: 7.77e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 262 NAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESEL 341
Cdd:PRK10923 130 NIQVNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESEL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 342 FGYVKGAFTGASaNGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFI 421
Cdd:PRK10923 210 FGHEKGAFTGAN-TIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRV 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 422 AEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLV 501
Cdd:PRK10923 289 QEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLT 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 502 NVVPSGEVIDSTlLPPNLLnnGTTEQSDVTEVSEAHLSL--------------DDAGGTALEEMEKQMIREALSRHNSKK 567
Cdd:PRK10923 369 VMAAGQEVLIQD-LPGELF--ESTVPESTSQMQPDSWATllaqwadralrsghQNLLSEAQPELERTLLTTALRHTQGHK 445
|
330 340
....*....|....*....|
gi 446339952 568 QVADE-LGIGIATLYRKIKK 586
Cdd:PRK10923 446 QEAARlLGWGRNTLTRKLKE 465
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
272-586 |
3.88e-84 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 269.59 E-value: 3.88e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTG 351
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 352 ASANgKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLF 431
Cdd:PRK10365 221 ADKR-REGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 432 YRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEVID 511
Cdd:PRK10365 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV-VLLTGEYIS 378
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446339952 512 STLLPpnllnngtteqsdvteVSEAHLSLDDAGGTALE---EMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKK 586
Cdd:PRK10365 379 ERELP----------------LAIASTPIPLGQSQDIQplvEVEKEVILAALEKTgGNKTEAARQLGITRKTLLAKLSR 441
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
261-515 |
1.36e-81 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 263.24 E-value: 1.36e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 261 ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESE 340
Cdd:PRK15115 125 APATDERWREAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 341 LFGYVKGAFTGASANgKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQF 420
Cdd:PRK15115 205 LFGHARGAFTGAVSN-REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKA 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500
Cdd:PRK15115 284 MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQC 363
|
250
....*....|....*
gi 446339952 501 VnVVPSGEVIDSTLL 515
Cdd:PRK15115 364 V-ALTSSPVISDALV 377
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
284-589 |
2.53e-78 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 250.92 E-value: 2.53e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 284 RLISRIApSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESelfgyvkgaftgasangktgliqa 363
Cdd:COG3604 107 RLLETLA-SLAAVAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES------------------------ 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 364 antgtlfldeigdmplmlqakllraIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPP 443
Cdd:COG3604 162 -------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIRLPP 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 444 LRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnVVPSGEVIDSTLLPPnllnng 523
Cdd:COG3604 217 LRERREDIPLLAEHFLEKFSRRLGKPILRLSPEALEALMAYPWPGNVRELENVIERAV-ILAEGGVLDADDLAP------ 289
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446339952 524 tteqsdvtevseahlslddAGGTALEEMEKQMIREALSRHNSKK-QVADELGIGIATLYRKIKKYEL 589
Cdd:COG3604 290 -------------------GSREALEEVEREHILEALERTGGNIaGAARLLGLTPSTLRSRMKKLGI 337
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
266-586 |
5.42e-77 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 257.84 E-value: 5.42e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 266 EPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYV 345
Cdd:PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 346 KGAFTGASANgKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGK 425
Cdd:PRK15429 452 RGAFTGASAQ-RIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADRE 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 426 FREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVnvvp 505
Cdd:PRK15429 531 FRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAV---- 606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 506 sgevidstllppnLLNNGTTEQSDVTEVSEAHLSLDDAGGTALE--EMEKQMIREALSRHN----SKKQVADELGIGIAT 579
Cdd:PRK15429 607 -------------LLTRGNVLQLSLPDITLPEPETPPAATVVAQegEDEYQLIVRVLKETNgvvaGPKGAAQRLGLKRTT 673
|
....*..
gi 446339952 580 LYRKIKK 586
Cdd:PRK15429 674 LLSRMKR 680
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
269-590 |
1.23e-74 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 241.11 E-value: 1.23e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 269 IEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGA 348
Cdd:PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 349 FTGASaNGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFRE 428
Cdd:PRK11608 85 FTGAQ-KRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 429 DLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLG-SVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLV-NVVPS 506
Cdd:PRK11608 164 DLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGlPLFPGFTERARETLLNYRWPGNIRELKNVVERSVyRHGTS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 507 GEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDdaggtaLEE----MEKQMIREAL--SRHNSKKqVADELGIGIATL 580
Cdd:PRK11608 244 EYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLD------LREwqhqQEKELLQRSLqqAKFNQKR-AAELLGLTYHQL 316
|
330
....*....|
gi 446339952 581 YRKIKKYELL 590
Cdd:PRK11608 317 RALLKKHQIL 326
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
164-495 |
4.68e-69 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 232.27 E-value: 4.68e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 164 TMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPI----------RFrpltFESNFTHGHMQHIVswddksel 233
Cdd:PRK10820 84 ALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAaqlingfnflRW----LESEPQDSHNEHVV-------- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 234 iigqlhnIQGrQLFLMAFHQSHtsfsvanAPDEPHIEQLVG-------ECRVMRQLKRLISR--------IAPSPSSVMV 298
Cdd:PRK10820 152 -------ING-QDFLMEITPVY-------LQDENDQHVLVGavvmlrsTARMGRQLQNLAVNddsafsqiVAVSPKMRQV 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 299 V----------------GESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAsANGKTGLIQ 362
Cdd:PRK10820 217 VeqarklamldapllitGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNA-LEGKKGFFE 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 363 AANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLP 442
Cdd:PRK10820 296 QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLP 375
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 446339952 443 PLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSN 495
Cdd:PRK10820 376 PLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKN 428
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
165-589 |
3.91e-65 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 224.56 E-value: 3.91e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 165 MIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIrFRPLTFESNF----THGH-MQHI-VSWDDKSELI---- 234
Cdd:PRK11388 208 LLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAI-TELLTLPAVLqqaiKQAHpLKHVeVTFESQGQFIdavi 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 235 -------------IGQLHNI-QGRQLflMAFHQSHTSFSvanapdephIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG 300
Cdd:PRK11388 287 tlkpiiegqgtsfILLLHPVeQMRQL--MTSQLGKVSHT---------FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCG 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 301 ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFgyvkGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380
Cdd:PRK11388 356 EEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFL----GSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLH 460
Cdd:PRK11388 432 LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 461 LHTRRLGSVYPgIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGeVIDSTLLPPNLLNNGTTEQSDVTEVSEAhlsl 540
Cdd:PRK11388 512 SLEKRFSTRLK-IDDDALARLVSYRWPGNDFELRSVIENLALSSDNG-RIRLSDLPEHLFTEQATDDVSATRLSTS---- 585
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 446339952 541 ddaggTALEEMEKQ-MIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589
Cdd:PRK11388 586 -----LSLAELEKEaIINAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGI 630
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
284-494 |
4.43e-48 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 175.79 E-value: 4.43e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 284 RLISRI----APSPSSVMVVGESGTGKEVVARAIHKLSGRRNK---PFIAINCAAIPEQLLESELFGYVKGAFTGAsANG 356
Cdd:COG4650 195 RLIEQIervaIRSRAPILLTGPTGAGKSQLARRIYELKKARHQvsgRFVEVNCATLRGDGAMSALFGHVKGAFTGA-VSD 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNV 436
Cdd:COG4650 274 RAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINL 353
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 437 IPITLPPLRERQEDIELLVHYFLHLHTRRLGS----------VYPGIA--PDVveilrkhRWPGNLRELS 494
Cdd:COG4650 354 WTFRLPGLAERREDIEPNLDYELARFAREQGRrvrfnkearaRYLAFAtsPEA-------LWSGNFRDLN 416
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
296-521 |
5.02e-30 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 125.61 E-value: 5.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 296 VMVVGESGTGKEVVARAIH---KLSGR--RNKPFIAINCA--AIPEQLLESELFGYVKGAFTGASANgKTGLIQAANTGT 368
Cdd:COG1221 133 TLILGPTGVGKSFFAELMYeyaIEIGVlpEDAPFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKD-KEGLIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 369 LFLDEIGDMPLMLQAKLLRAIEAREILPIGASSP-IQVDIRIISATNQN-----LAQFIaegkfRedlfyRlnvIP--IT 440
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEKtRKANVRIIFATTEDpesslLKTFL-----R-----R---IPmvIK 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 441 LPPLRER--QEDIElLVHYFLHLHTRRLG-SVYpgIAPDVVEILRKHRWPGNLRELSNLME------YLVNVVPSGEV-- 509
Cdd:COG1221 279 LPSLEERslEERLE-LIKHFFKEEAKRLNkPIK--VSKEVLKALLLYDCPGNIGQLKSDIQlacakaFLNYITNKKEEie 355
|
250
....*....|..
gi 446339952 510 IDSTLLPPNLLN 521
Cdd:COG1221 356 ITLSDLPENVKK 367
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
277-443 |
4.27e-25 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 101.45 E-value: 4.27e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 277 RVMRQLKRLISRiaPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKgaftgasANG 356
Cdd:cd00009 5 EAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFL-------VRL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 357 KTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIgasspIQVDIRIISATNQNLaqfiaEGKFREDLFYRLNV 436
Cdd:cd00009 76 LFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRI-----DRENVRVIGATNRPL-----LGDLDRALYDRLDI 145
|
....*..
gi 446339952 437 IpITLPP 443
Cdd:cd00009 146 R-IVIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
273-444 |
4.51e-20 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 86.63 E-value: 4.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 273 VGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESelfgyvkgaftga 352
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 353 sangktgliqaANTGTLFLDEIGDMPLMLQAKLLRAIEAREilpigasspiQVDIRIISATNQNLAQFIAEGKFREDLFY 432
Cdd:pfam14532 68 -----------AKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYF 126
|
170
....*....|..
gi 446339952 433 RLNVIPITLPPL 444
Cdd:pfam14532 127 ELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
292-414 |
1.31e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 62.78 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 292 SPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFTGAS----ANGKTGLIQAANTG 367
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrLRLALALARKLKPD 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 446339952 368 TLFLDEIGDMPLMLQAKLLRAIEAREILpigASSPIQVDIRIISATN 414
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLL---LLLKSEKNLTVILTTN 124
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
548-586 |
5.19e-10 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 54.71 E-value: 5.19e-10
10 20 30 40
....*....|....*....|....*....|....*....|
gi 446339952 548 LEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKK 586
Cdd:pfam02954 1 LEEVEKELIEAALERTGgNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
295-414 |
7.97e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 45.75 E-value: 7.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 295 SVMVVGESGTGK-EVVARAIHKLSGRrnkPFIAINCaaiPEQLLESELFG----------YVKGAFTGAsanGKTGLIqa 363
Cdd:pfam07728 1 GVLLVGPPGTGKtELAERLAAALSNR---PVFYVQL---TRDTTEEDLFGrrnidpggasWVDGPLVRA---AREGEI-- 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 446339952 364 antgtLFLDEIGDMPLMLQAKLLRAIEAREILPIGASSPIQV---DIRIISATN 414
Cdd:pfam07728 70 -----AVLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN 118
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
271-388 |
1.84e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 45.19 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 271 QLVGECRVMRQLKRLISRI-APSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINC------AAIPEQLLESELFG 343
Cdd:pfam13191 1 RLVGREEELEQLLDALDRVrSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCdenlpySPLLEALTREGLLR 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 446339952 344 YVKGA--FTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRA 388
Cdd:pfam13191 81 QLLDEleSSLLEAWRAALLEALAPVPELPGDLAERLLDLLLRLLDLL 127
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
162-205 |
3.31e-05 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 42.00 E-value: 3.31e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 446339952 162 FATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPI 205
Cdd:smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSL 46
|
|
| PAS_8 |
pfam13188 |
PAS domain; PAS domains are involved in many signalling proteins where they are used as a ... |
162-194 |
1.19e-04 |
|
PAS domain; PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Heme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. This domain recognizes oxygen and CO (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 463802 [Multi-domain] Cd Length: 65 Bit Score: 40.23 E-value: 1.19e-04
10 20 30
....*....|....*....|....*....|...
gi 446339952 162 FATMIDNMDQGVLVVDDESRVQFVNQTALKTLG 194
Cdd:pfam13188 3 LRALFESSPDGILVLDEGGRIIYVNPAALELLG 35
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
162-206 |
1.30e-04 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 44.45 E-value: 1.30e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 446339952 162 FATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIR 206
Cdd:COG3852 9 LRAILDSLPDAVIVLDADGRITYVNPAAERLLGLSAEELLGRPLA 53
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
548-589 |
2.14e-04 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 39.32 E-value: 2.14e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446339952 548 LEEMEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYEL 589
Cdd:pfam18024 8 VSYIERELIGAAYENYKSARKVAKALGLSHTTIANKMKRYGI 49
|
|
| GAF |
smart00065 |
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ... |
12-116 |
3.31e-04 |
|
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Pssm-ID: 214500 [Multi-domain] Cd Length: 149 Bit Score: 41.21 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 12 QIQPTIQRFARMLASVLQLE---VEIVDENLCR----VAGTGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLC 84
Cdd:smart00065 1 DLEELLQTILEELRQLLGADrvlIYLVDENDRGelvlVAADGLTLPTLGIRFPLDEGLAGRVAETGRPLNIPDVEADPLF 80
|
90 100 110
....*....|....*....|....*....|..
gi 446339952 85 EGCDSKENCREKAFLGTPVILQDRCVGVISLI 116
Cdd:smart00065 81 AEDLLGRYQGVRSFLAVPLVADGELVGVLALH 112
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
164-205 |
1.27e-03 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 41.49 E-value: 1.27e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446339952 164 TMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPI 205
Cdd:COG5000 94 TILENLPAGVIVLDADGRITLANPAAERLLGIPLEELIGKPL 135
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
169-205 |
5.86e-03 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 36.84 E-value: 5.86e-03
10 20 30
....*....|....*....|....*....|....*..
gi 446339952 169 MDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPI 205
Cdd:cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSL 37
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
265-374 |
6.81e-03 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 39.12 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446339952 265 DEPHIEQLVGECRVMRQLKRLISRI-----------APSPSSVMVVGESGTGKEVVARAIHKLSGRrnkPFIAINCAAIP 333
Cdd:COG0464 152 REAILDDLGGLEEVKEELRELVALPlkrpelreeygLPPPRGLLLYGPPGTGKTLLARALAGELGL---PLIEVDLSDLV 228
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 446339952 334 EQLL-ESElfGYVKGAFTGASANGKtgliqaantGTLFLDEI 374
Cdd:COG0464 229 SKYVgETE--KNLREVFDKARGLAP---------CVLFIDEA 259
|
|
| PRK11360 |
PRK11360 |
two-component system sensor histidine kinase AtoS; |
164-206 |
8.84e-03 |
|
two-component system sensor histidine kinase AtoS;
Pssm-ID: 236901 [Multi-domain] Cd Length: 607 Bit Score: 39.18 E-value: 8.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 446339952 164 TMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNIIGKPIR 206
Cdd:PRK11360 266 LILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYS 308
|
|
| HTH_Hin_like |
cd00569 |
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
553-582 |
9.24e-03 |
|
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.
Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 34.22 E-value: 9.24e-03
10 20 30
....*....|....*....|....*....|
gi 446339952 553 KQMIREALSRHNSKKQVADELGIGIATLYR 582
Cdd:cd00569 11 IAEARRLLAAGESVAEIARELGVSRSTLYR 40
|
|
| |
