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Conserved domains on  [gi|446336775|ref|WP_000414630|]
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MULTISPECIES: MFS transporter [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RhaT super family cl34009
Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and ...
23-134 6.40e-03

Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only];


The actual alignment was detected with superfamily member COG0697:

Pssm-ID: 440461 [Multi-domain]  Cd Length: 290  Bit Score: 36.74  E-value: 6.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446336775  23 LMAITLCGFVICYGLIF-GLFYLLSGsradyliVTIVISAIISIFVIILSIVpvivlasdLFKERISK-----------G 90
Cdd:COG0697   68 LLLRGLLGLALAFLLFFlALQYTPAA-------LAALLLALAPLFVALLAAL--------LLGERLSRrrwlglllgfaG 132
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446336775  91 VILIVL--------AIIALVLCnFVSAILWfvsAISILGRKKLVAAADTTTI 134
Cdd:COG0697  133 VLLIVGpgggggggSLLGDLLA-LLAALSW---ALYTVLTRRLSRRLDPLTL 180
 
Name Accession Description Interval E-value
RhaT COG0697
Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and ...
23-134 6.40e-03

Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only];


Pssm-ID: 440461 [Multi-domain]  Cd Length: 290  Bit Score: 36.74  E-value: 6.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446336775  23 LMAITLCGFVICYGLIF-GLFYLLSGsradyliVTIVISAIISIFVIILSIVpvivlasdLFKERISK-----------G 90
Cdd:COG0697   68 LLLRGLLGLALAFLLFFlALQYTPAA-------LAALLLALAPLFVALLAAL--------LLGERLSRrrwlglllgfaG 132
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446336775  91 VILIVL--------AIIALVLCnFVSAILWfvsAISILGRKKLVAAADTTTI 134
Cdd:COG0697  133 VLLIVGpgggggggSLLGDLLA-LLAALSW---ALYTVLTRRLSRRLDPLTL 180
 
Name Accession Description Interval E-value
RhaT COG0697
Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and ...
23-134 6.40e-03

Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only];


Pssm-ID: 440461 [Multi-domain]  Cd Length: 290  Bit Score: 36.74  E-value: 6.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446336775  23 LMAITLCGFVICYGLIF-GLFYLLSGsradyliVTIVISAIISIFVIILSIVpvivlasdLFKERISK-----------G 90
Cdd:COG0697   68 LLLRGLLGLALAFLLFFlALQYTPAA-------LAALLLALAPLFVALLAAL--------LLGERLSRrrwlglllgfaG 132
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446336775  91 VILIVL--------AIIALVLCnFVSAILWfvsAISILGRKKLVAAADTTTI 134
Cdd:COG0697  133 VLLIVGpgggggggSLLGDLLA-LLAALSW---ALYTVLTRRLSRRLDPLTL 180
UhpC COG2271
Sugar phosphate permease [Carbohydrate transport and metabolism];
18-121 7.48e-03

Sugar phosphate permease [Carbohydrate transport and metabolism];


Pssm-ID: 441872 [Multi-domain]  Cd Length: 363  Bit Score: 36.39  E-value: 7.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446336775  18 IAYIVLMAITLCGFVICYGLIFGLFYLLSgsradYLI----VTIVISAIISIFVIILSIV--PVIVLASDLFKERISKGV 91
Cdd:COG2271  177 LALLRFWLLALAYFLVYFALYGFLTWLPT-----YLVevrgLSLAQAGLLLSLPFLAGIVgsLLGGWLSDRLGRRRKLVL 251
                         90       100       110
                 ....*....|....*....|....*....|.
gi 446336775  92 IL-IVLAIIALVLCNFVSAILWFVSAISILG 121
Cdd:COG2271  252 AIgLLLAALALLLLALLPSPALAIALLFLAG 282
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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