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Conserved domains on  [gi|446297601|ref|WP_000375456|]
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MULTISPECIES: flagellar basal body rod protein FlgF [Enterobacteriaceae]

Protein Classification

flagellar basal body rod protein FlgF( domain architecture ID 11486070)

flagellar basal body rod protein FlgF is a component of the proximal portion of the basal body central rod of flagellar organelles

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-245 1.72e-122

flagellar basal body rod protein FlgF; Reviewed


:

Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 348.00  E-value: 1.72e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  81 AIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDID 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 160 RLKLVDIPVANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGN 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAAN 240


                 ....*.
gi 446297601 240 RLLRGS 245
Cdd:PRK12640 241 QLLRMS 246
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-245 1.72e-122

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 348.00  E-value: 1.72e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  81 AIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDID 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 160 RLKLVDIPVANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGN 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAAN 240


                 ....*.
gi 446297601 240 RLLRGS 245
Cdd:PRK12640 241 QLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-245 3.88e-119

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 339.42  E-value: 3.88e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  81 AIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDID 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 160 RLKLVDIPVANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGN 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKDGGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQAAN 240


                 ....*.
gi 446297601 240 RLLRGS 245
Cdd:COG4787  241 QLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-224 1.06e-53

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 172.82  E-value: 1.06e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601    3 RLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMAT---NDKVKGGGFdTRYMAQEGASGVNDSTGVAEKTERPLD 79
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQdllSQSVSGSGQ-VGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   80 VAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVL-GDNGPIILPPNA-IASFGSDGTLSVTPDDGDvtaTM 156
Cdd:TIGR03506  80 LAISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLdWGGGPITLPPDAgSVSIGEDGTVSATYSNGQ---TV 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446297601  157 DIDRLKLVDIP-VANLEKNAEGMLVTADG------VPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQ 224
Cdd:TIGR03506 157 ELGQIALANFPnPDGLRKEGGNLYSATPGsgaalvGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-241 3.17e-17

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 73.45  E-value: 3.17e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446297601  169 ANLEKNAEGMLVTADGVP-AQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGNRL 241
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPiLGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 1-245 1.72e-122

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 348.00  E-value: 1.72e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDV 80
Cdd:PRK12640   1 MDRALYTAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVFGEGLPTRVFALASTPGADFSPGPLQTTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  81 AIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDID 159
Cdd:PRK12640  81 ALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLrTANGLPVLGDGGPIAVPPGAKITIGADGTISALPPGDPPNAVAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 160 RLKLVDIPVANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGN 239
Cdd:PRK12640 161 RLKLVNPPAAQLTRGDDGLFRTTDGAPAPADPTVRVMSGALEGSNVNAVEEMVSMIALARQFEMQVKMMKTADENAQAAN 240


                 ....*.
gi 446297601 240 RLLRGS 245
Cdd:PRK12640 241 QLLRMS 246
FlgF COG4787
Flagellar basal body rod protein FlgF [Cell motility];
1-245 3.88e-119

Flagellar basal body rod protein FlgF [Cell motility];


Pssm-ID: 443817 [Multi-domain]  Cd Length: 246  Bit Score: 339.42  E-value: 3.88e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDV 80
Cdd:COG4787    1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFRADLEAARAVPVQGEGLPTRAFAVTETPGTDFSPGPLQQTGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  81 AIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDID 159
Cdd:COG4787   81 AIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLvTGNGLPVLGDGGPITIPPGAKVTIGADGTISIVPAGGPPNALAEVG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 160 RLKLVDIPVANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGN 239
Cdd:COG4787  161 RLKLVNPDPAQLVKGDDGLFRLKDGGPLPADPNVRVVSGALEGSNVNAVEEMVSMISLARQFEMQMKMMKTADENDQAAN 240


                 ....*.
gi 446297601 240 RLLRGS 245
Cdd:COG4787  241 QLLRLS 246
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 3-224 1.06e-53

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 172.82  E-value: 1.06e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601    3 RLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMAT---NDKVKGGGFdTRYMAQEGASGVNDSTGVAEKTERPLD 79
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQdllSQSVSGSGQ-VGGGVRTSGVATDFSQGSLQSTGNSLD 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   80 VAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVL-GDNGPIILPPNA-IASFGSDGTLSVTPDDGDvtaTM 156
Cdd:TIGR03506  80 LAISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLvTSDGYPLLdWGGGPITLPPDAgSVSIGEDGTVSATYSNGQ---TV 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446297601  157 DIDRLKLVDIP-VANLEKNAEGMLVTADG------VPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQ 224
Cdd:TIGR03506 157 ELGQIALANFPnPDGLRKEGGNLYSATPGsgaalvGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-243 2.84e-51

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 167.68  E-value: 2.84e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   5 IYTALSGASQTLYEQQISANNLANVNTNGFRADMA-----MATNDKVKGGGFDTRYMAQEGA---SGV-------NDSTG 69
Cdd:COG4786    1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAvfedlLYQLIRRPGAPSSQGTQTPVGLqlgTGVrvaatqtDFTQG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  70 VAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPIILPPNAIA-SFGSDGTLSVTP 147
Cdd:COG4786   81 SLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLvTSDGYPVLPENGPITIPEDATSiTISEDGTVSVTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 148 DDGDVTatmDIDRLKLVDIP-VANLEKNAEGMLVTADGVPAQ------RDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQ 220
Cdd:COG4786  161 ADGDGQ---QVGQLGLVDFAnPAGLEKVGDNLFRETAASGAPivgtpgEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRA 237

                        250       260
                 ....*....|....*....|...
gi 446297601 221 FEAQIKMMKTAEDISDAGNRLLR 243
Cdd:COG4786  238 YEANSKVIQTADEMLGKANNLRG 260
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 1-205 4.48e-40

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 137.28  E-value: 4.48e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRYMAQEGASGVNDSTGVAEKTERPLDV 80
Cdd:PRK12643   1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPSLATRTMVTTSTPGVDISQGTMNFSGRPLDV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  81 AIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLTIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDIDR 160
Cdd:PRK12643  81 ALQQDGYLAVQLPDGSEAYTRNGNIQISANGQMTVQGYPLMGDNGPIDVPPQAAVTIAADGTISALNAGDSPNTIAQLGQ 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 446297601 161 LKLVDIPVANLEKNAEGML----VTADGVPAQRDENIKVSGGFLEGSNV 205
Cdd:PRK12643 161 IKRVQATAGEMMHGDDGLFhltpETQQARGAQLPNDPLVKPGEREHQWL 209
flgF PRK12689
flagellar basal-body rod protein FlgF;
1-234 2.33e-38

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 134.10  E-value: 2.33e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSgaSQTLYEQQIS--ANNLANVNTNGFRAD--------MAMATNDKVKGggFDTRY-MAQEGASGVNDSTG 69
Cdd:PRK12689   1 MQNALLVGLS--RQMALERQLDvvANNVANVNTNGFKARsslfqeylMPGAHEDNFQR--PDRRVsYVQDRGTPLDLSQG 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  70 VAEKTERPLDVAIQGAGYIAVQDKNGnEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPIIL-PPNAIASFGSDGTLSVTp 147
Cdd:PRK12689  77 PLEQTKNPLDVAIDGDAFLAVQTPQG-ERYTRDGALEINAQGQLvTSDGYPVLGTGGPITFqPTDTGIAISPDGTVSVN- 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 148 dDGDVTATMDIDRLKLVDIPVANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKM 227
Cdd:PRK12689 155 -EGTATTDSIRGKLRLVTFANPQALKKEGANLYAATAPARPADTKARVEQGYIERSNVNPVLEMTRMMEVNRTYTQVSSM 233


                 ....*..
gi 446297601 228 MKTAEDI 234
Cdd:PRK12689 234 LQQQSDL 240
flgF PRK12641
flagellar basal-body rod protein FlgF;
1-242 1.94e-36

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 129.29  E-value: 1.94e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATNDKVKGGGFDTRymAQEGASGVNDSTGVAEKTERPLDV 80
Cdd:PRK12641   1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFILAIQNHNVKNLYNSD--KKITKEYYNLSPGTLRYTGRNLDL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  81 AIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLTIDGNLVLGDNGPIILPPNAIASFGSDGTLSVTPDDGDVTATMDIDR 160
Cdd:PRK12641  79 FIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKLTVQNNEVIGNNGNIIIPKNINLKISSNGVITSIKNNHKHIVETKIGS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 161 LKLVDIPVANLEKNAEGMLVTADGVPAQR--------DENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAE 232
Cdd:PRK12641 159 LKLVQLPSQDLIQKENGLFYLKKNNEINKkhtknikhSSKIRVQSGMLEESNVNASKNMIEMISNARQFEMQMKIISMCD 238

                        250
                 ....*....|
gi 446297601 233 DISDAGNRLL 242
Cdd:PRK12641 239 QNTEYANQLI 248
flgF PRK12690
flagellar hook-basal body complex protein;
1-243 3.17e-32

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 117.86  E-value: 3.17e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMAMATnDKVKGGGFDTRY--MAQEGASGVNDSTGVAEKTERPL 78
Cdd:PRK12690   1 MDNAGYTTLTRQSGLMREMQVVANNIANASTTGFRREGLVFS-EYVKSLDSGEASlsMARASGRQTDLEQGGLTQTGGQF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  79 DVAIQGAGYIAVQDKNGNEVyTRNGNIQQDDQGQL-TIDGNLVLGDNG-PIILPPNAIA-SFGSDGTLSVtpdDGDVtat 155
Cdd:PRK12690  80 DFAIEGEGFFMVETPQGERL-TRAGSFTPNAEGELvDPDGNRLLDAGGaPIFIPPDARSvAVGADGTLSA---DGQP--- 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 156 mdIDRLKLVdIPVANLEKNAE-GMLVTADG--VPAqrdENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKtAE 232
Cdd:PRK12690 153 --LGQIGLY-QPTDPLGLRREgGTRFRAEGgvEPA---EGARLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFLD-RE 225

                        250
                 ....*....|...
gi 446297601 233 D--ISDAGNRLLR 243
Cdd:PRK12690 226 DerIRTTIRTLGQ 238
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 5-242 2.20e-29

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 110.91  E-value: 2.20e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601    5 IYTALSG--ASQTlyEQQISANNLANVNTNGFRADMAMATN---DKVKGGGFDTRYMAQEGASGVNDSTGV--------- 70
Cdd:TIGR02488   2 LWTAATGmnAQQT--NMDVISNNLANVNTTGFKKDRAEFEDllyQTERQPGAQSSEQQTILPVGVQVGLGVrvvatqklf 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   71 ----AEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLgdnGPIILPPNAIA-SFGSDGTLS 144
Cdd:TIGR02488  80 tqgsLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLvTSNGYPLQ---PEITIPENATSiTVGSDGEVS 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  145 VTpdDGDVTATMDIDRLKLVD-IPVANLEKNAEGMLVTAdgvPAQRDENIKVSG---------GFLEGSNVSAVSEMMSS 214
Cdd:TIGR02488 157 VR--QGGQTEPQEVGQITLATfINPAGLEAVGENLFRET---PASGPPQIGTPGldgfgklrqGFLEASNVNVVQEMVDM 231

                         250       260
                  ....*....|....*....|....*...
gi 446297601  215 IAMNRQFEAQIKMMKTAEDISDAGNRLL 242
Cdd:TIGR02488 232 ITAQRAYEMNSKAIQASDQMLQTVSQLL 259
flgF PRK12642
flagellar basal-body rod protein FlgF;
1-245 9.85e-29

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 108.60  E-value: 9.85e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSgaSQTLYEQQIS--ANNLANVNTNGFRAD-------MAMATNDKVKgggfdtryMAQEGASGVNDSTGVA 71
Cdd:PRK12642   1 MQSGLYVALS--SQMALEKRLDtiADNVANVNTVGFRATevkfdtvVSDTASKKVA--------FVSQGKSYLSTEAGPL 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  72 EKTERPLDVAIQGAGYIAVQDKNGnEVYTRNGNIQQDDQGQL-TIDGNLVLGDNG-PIILPPNAIA-SFGSDGTLSvtpd 148
Cdd:PRK12642  71 TKTGNPLDFAVKGDAWFSFDTPAG-QVYTRDGRFTMTSTGELvSVTGYPVLDAGGaPIQLNPGGGEpTIGADGAIY---- 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 149 dgdvTATMDIDRLKLVDIPV-ANLEK-NAEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIK 226
Cdd:PRK12642 146 ----QNGVQVGAIGLFEIDAdAGLLRyGNSGVIPDKPPQPVVDRNSVGVVQGYLEGSNVNAMTEMTQLISVSRAFESVSS 221

                        250
                 ....*....|....*....
gi 446297601 227 MMKTAEDISDAGNRLLRGS 245
Cdd:PRK12642 222 LMRQSESSVSEAIKTLGGS 240
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 1-233 5.45e-26

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 101.86  E-value: 5.45e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSG--ASQTlyeqQIS--ANNLANVNTNGFRADMAMatndkvkgggF-DTRY--MAQEGASGVNDS------ 67
Cdd:PRK12693   1 MIRALWIAKTGldAQQT----NIDviSNNLANVNTTGFKKSRAV----------FeDLLYqtIRQPGAQSSQNTtlpsgl 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  68 ---TGV-------------AEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLTIDGNLVLGDNgpIILPP 131
Cdd:PRK12693  67 qvgTGVrpvatqkiftqgnLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQPE--ITIPE 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 132 NAIA-SFGSDGTLSVTpdDGDVTATMDIDRLKLVD-IPVANLEKNAEGMLVTAD-------GVPAQrDENIKVSGGFLEG 202
Cdd:PRK12693 145 NATSiTIGTDGTVSVT--QAGQAAPQVVGQITLTDfINPAGLESIGENLYLETAasgapieGTPGL-NGLGTLRQGFLET 221

                        250       260       270
                 ....*....|....*....|....*....|.
gi 446297601 203 SNVSAVSEMMSSIAMNRQFEAQIKMMKTAED 233
Cdd:PRK12693 222 SNVNVVEELVNMITGQRAYEMNSKAISTADQ 252
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 1-234 1.58e-24

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 97.90  E-value: 1.58e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRA------DM-----AMATNDKVKGGGFDTRYM---AQEGASGVND 66
Cdd:PRK12636   1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTYGFKKsrvtfkDMvsqtiSGASGPTANRGGVNSKQVglgSQLGAIDTIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  67 STGVAEKTERPLDVAIQGAGYIAVQDKNgNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNG-PIILPPNAIA-SFGSDGTL 143
Cdd:PRK12636  81 TQGSLQTTGRPLDLAISGDGFFRVGDGD-NTAYTRAGNFYLDNEGNIvNADGLYLLGMNGgRIQIPTDAQSfSIGADGTV 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 144 SVTPDDGDvtaTMDIDRLKLVDIP-VANLEKNAEGMLV------TADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSIA 216
Cdd:PRK12636 160 SYVDAGGE---LQTAGQIGLATFAnPDGLEKAGDNLYRetlnsgTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIV 236

                        250
                 ....*....|....*...
gi 446297601 217 MNRQFEAQIKMMKTAEDI 234
Cdd:PRK12636 237 AQRGFQANTRIITTSDEI 254
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 1-233 1.34e-23

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 95.54  E-value: 1.34e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRA---------DMAMATNDKVKGGgfdtRYMAQ-----EGASGVND 66
Cdd:PRK12818   1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSdnlafksfeDVLIENYDKKVGN----KNVKNiigglSMGSKIDE 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  67 ST-----GVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDN------GPIILpPNAI 134
Cdd:PRK12818  77 VNtlftqGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLvNDSGYYVLGRNnatgarEPINV-GNGK 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 135 ASFGSDGTLSVtpdDGDVTatmdiDRLKLVDI-PVANLEKNAEGmLVTADGvpAQRDENIKVSGGFLEGSNVSAVSEMMS 213
Cdd:PRK12818 156 FSTDADGNISL---DGNAS-----YKFNVADFnDYNSLKKIGDN-LYTGNN--PQNINGAIVRQNSLEKSNVNVTNEMVN 224

                        250       260
                 ....*....|....*....|
gi 446297601 214 SIAMNRQFEAQIKMMKTAED 233
Cdd:PRK12818 225 MMTTMRSFETNQKIVQSIDE 244
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 1-243 2.35e-18

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 81.39  E-value: 2.35e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGF---RADM------------AMATNDKVKGGGFDTRYMAQEGASGVN 65
Cdd:PRK12816   1 MMRSLWTAASGMNAQQFNIDTIANNLANVNTTGFkkiRAEFedliyqtqrragTPATEDTVTPLGVQVGHGVKVAATQRL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  66 DSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGdngPIILPPNAIA---SFGSDG 141
Cdd:PRK12816  81 FEQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLvTSNGYRLLP---EIIFPENYILnsiTISEEG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 142 TLSV-TPDDGDVTATMDIDRLKLVDIPV-----ANLEKNAEGMLVTADGVPAQrDENIKVSGGFLEGSNVSAVSEMMSSI 215
Cdd:PRK12816 158 IVSVkVGEDNDPIELGQIELYRFVNPAGlsaigKNLFKETIASGQEIPGIPGS-EGFGRVLQGFLEMSNVSIVEEMVTMI 236

                        250       260
                 ....*....|....*....|....*...
gi 446297601 216 AMNRQFEAQIKMMKTAEDISDAGNRLLR 243
Cdd:PRK12816 237 VAQRAYEINSKAIQTSDNMLGTANNLKR 264
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 127-222 8.56e-18

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 75.74  E-value: 8.56e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  127 IILPPNAIASFGSDGTLSVtpddgdvtATMDIDRLKLVDIP-VANLEKNAEGMLVTADGVPAQRDENIKVSGGFLEGSNV 205
Cdd:TIGR02490   1 IVLPPDGDITIGADGTISQ--------DGEEVGRLGLVNFDnPNQLQREGDGLFRATGGGPAPADSNVRVVQGYLEGSNV 72

                          90
                  ....*....|....*..
gi 446297601  206 SAVSEMMSSIAMNRQFE 222
Cdd:TIGR02490  73 NAVSEMVDMIEAQRAYE 89
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 169-241 3.17e-17

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 73.45  E-value: 3.17e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446297601  169 ANLEKNAEGMLVTADGVP-AQRDENIKVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQIKMMKTAEDISDAGNRL 241
Cdd:pfam06429   1 AGLEKGGDNLFRETDGAPiLGAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 1-234 2.30e-16

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 75.88  E-value: 2.30e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGasqtLYEQQ-----ISaNNLANVNTNGFRA------DMAMATNDKvKGGGFDTRYMAQEGaSGV----- 64
Cdd:PRK12817   1 MLRAFWNSKSG----MNAQQekldsIS-NNLANVNTTGYKRedvsfsDLVYETLDR-KGYPTNDKPEIITG-TGVkatnw 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  65 --NDSTGVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQLTID-GNLVLGDNGPIILPPNAIASFGSDg 141
Cdd:PRK12817  74 irDNQQGNLLTTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDnGNRLEIQLEAGVGINNRNTGFDSN- 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 142 TLSVTPDDGDVTATMDIDRLKLVDIPVANLEKN------AEGMLVTADGVPAQRDENIKVSGGFLEGSNVSAVSEMMSSI 215
Cdd:PRK12817 153 NFTVDEDGGISVKNVDGQNKKVGKINIYNAVGNdafisiGDNLYVPSDGVQVFLNNDVDILQGYLENSNVDLGKEMTDMI 232

                        250
                 ....*....|....*....
gi 446297601 216 AMNRQFEAQIKMMKTAEDI 234
Cdd:PRK12817 233 ITQRAFQLSSKGIKTADEM 251
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 8-243 2.58e-15

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 72.96  E-value: 2.58e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   8 ALSGASQTLYEQQIS----ANNLANVNTNGFRADMAMATN-----DKVKGGGFDTRYMA-QEGAS---GVNDST------ 68
Cdd:PRK12692   3 ALAIAATGMSAQQLNleviANNIANLNTTGFKGARAEFTDllyqaERQQGVPNQAGQEAvPEGAMlglGVRAAAirnlhr 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  69 -GVAEKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVlgdnGPIILPPNaiasfgsdGTLSVT 146
Cdd:PRK12692  83 qGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLvTMEGYAV----DPAILIPQ--------NTTQVT 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 147 PDD-GDVTATMD-------IDRLKLVDI-------PVAN---LEKNAEGMLVTadGVPAQRDENiKVSGGFLEGSNVSAV 208
Cdd:PRK12692 151 INEsGQVFAKIDgqvapqnLGQLTLANFanesglePLGNglyRETPASGAPVV--GNPGDVGFG-KIQQGYLEGSNVDPV 227

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 446297601 209 SEMMSSIAMNRQFEAQIKMMKTAEDISDAGNRLLR 243
Cdd:PRK12692 228 KEITSLITAQRAFEMNSKVIQAADEMAGTVSKGIR 262
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
6-122 9.58e-15

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 72.90  E-value: 9.58e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   6 YTALSG--ASQTlyeqQIS--ANNLANVNTNGFR------ADM----AMATNDKVKGGGfdtrymAQEGASGVNDSTGVA 71
Cdd:COG1749    6 NTGVSGlnAAST----ALDviGNNIANSNTVGFKssraefADLvaqsLSGANPTQVGGG------VRVASVAQIFTQGSL 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446297601  72 EKTERPLDVAIQGAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLG 122
Cdd:COG1749   76 QSTGNALDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLvNSSGLYLQG 127
flgE PRK05682
flagellar hook protein FlgE; Validated
 6-114 7.70e-10

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 58.31  E-value: 7.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   6 YTALSGasqtLYEQQIS----ANNLANVNTNGFR------ADM---AMATNDKVKGGGFDTRYMAQEGASGVNDSTGvae 72
Cdd:PRK05682   4 NTAVSG----LNAASNRldviGNNIANANTTGFKssraefADLyanSAGTNPTQVGSGVKVAGVAQQFSQGSITSTG--- 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 446297601  73 kteRPLDVAIQGAGYIAVqDKNGNEVYTRNGNIQQDDQGQLT 114
Cdd:PRK05682  77 ---NSLDLAISGNGFFVV-SNGGNGFYTRAGAFKLDKNGYLV 114
flgE PRK06803
flagellar basal body protein FlaE;
8-114 9.83e-10

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 57.86  E-value: 9.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   8 ALSGASQTLYEQQISANNLANVNTNGF---RADMAMATNDKVKGGgfdtryMAQEGASGVNDSTGVAEKTERPLDVAIQG 84
Cdd:PRK06803   6 ALSGLNATTQQLNTISNNIANSSTKGFkgsRTEFSSIYNGGQPGG------VEVSSVSQNFSKDGSLTYTGRGLDLAISG 79

                         90       100       110
                 ....*....|....*....|....*....|
gi 446297601  85 AGYIAVQDKNGNEVYTRNGNIQQDDQGQLT 114
Cdd:PRK06803  80 GGFFVLKESDGDTAYTRAGMFRSDVDGYLT 109
flgG PRK12819
flagellar basal-body rod protein FlgG;
5-243 9.30e-07

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 48.72  E-value: 9.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   5 IYTALSGASQTLYEQQISANNLANVNTNGFRADM----AMATNDKVKGGGFDTR------YMAQEGASGVNDSTGVAEKT 74
Cdd:PRK12819   4 LYIGSMGMMNYMQRINVHSNNVANAQTTGFKAENmtskVFDVQDTYRRGDGAVTnigsvdYAVVPAATHVNLVQGNIQMT 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  75 ERPLDVAIQ----GAGYIAVQDKNGNEVYTRNGNIQQDDQGQL-TIDGNLVLGDNGPII-LPPNAIASFGSDGTLSvtpd 148
Cdd:PRK12819  84 NSDTDFFLDdgpaGTSSFFVTSKNGETFLTRDGSFTLNSDRYLqTASGAFVMGENNERIrIPEGAKVAVQADGTLY---- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601 149 dgDVTATMDIDRL--KLVDIPVAN-LEKNAEGMLVTADGVPAQRDENI-KVSGGFLEGSNVSAVSEMMSSIAMNRQFEAQ 224
Cdd:PRK12819 160 --DAVTQNNIARLqtKTVSAEQNDrLVQRENKSFTLAEGNIANLPNGQgIVKNGMLENSNVDMTKEMADLMTDQRMIQAS 237

                        250       260
                 ....*....|....*....|
gi 446297601 225 IKMMKTAEDISDA-GNRLLR 243
Cdd:PRK12819 238 QRVMTSFDKIYEKeANEILR 257
flgE PRK08425
flagellar hook protein FlgE; Validated
 1-113 3.05e-04

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 41.61  E-value: 3.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGF---RADMA--------MATNDKVKGGGFDTrymAQEG-ASGVNDST 68
Cdd:PRK08425   1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFkysRASFVdmlsqtklIATAPKGGLGGQND---MQIGlGVGVSSTT 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446297601  69 -----GVAEKTERPLDVAIQGAGYIAVQDKNGN-EVYTRNGNIQQDDQGQL 113
Cdd:PRK08425  78 kifsqGSIQNTDKNTDLAIQGDGFFIVSPDGGTtRNYTRDGDFKFDAQGNF 128
Flg_bb_rod pfam00460
Flagella basal body rod protein;
5-34 5.11e-03

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 33.69  E-value: 5.11e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 446297601    5 IYTALSGASQTLYEQQISANNLANVNTNGF 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
flgE PRK05841
flagellar hook protein FlgE; Validated
 1-149 9.00e-03

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 37.13  E-value: 9.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601   1 MDRLIYTALSGASQTLYEQQISANNLANVNTNGFRADMA-----MATN-DKVKGGGF---DTRYMAQEGASGVNDSTGVA 71
Cdd:PRK05841   1 MNDTLLNAYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPefktlFSSHlDALNAKSVvanDRNYGVTGSSNAISNKDGEY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446297601  72 EKTERPLDVAIQGAGYIAV-QDKNGN-------------EVYTRNGNIQQDDQGQL-TIDGNLVLG-DNGPIilppnaia 135
Cdd:PRK05841  81 KPSDGEFHMAYQGKGWFVVgPNKNGSmtinkdgfskkqdNYFTRDGSFARDADGYLvNPEGYYVYGiDLGKI-------- 152

                        170
                 ....*....|....
gi 446297601 136 sfgSDGTLSVTPDD 149
Cdd:PRK05841 153 ---KDGTLNSTARD 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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