MULTISPECIES: prepilin peptidase-dependent pilin [Enterobacteriaceae]
prepilin peptidase-dependent protein( domain architecture ID 11484806)
prepilin peptidase-dependent protein is a type IV pilin and may be involved in adhesion, DNA uptake, phage transduction, aggregation and a flagella-independent movement called "twitching motility"
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PRK10574 | PRK10574 | putative major pilin subunit; Provisional |
1-146 | 2.55e-111 | |||
putative major pilin subunit; Provisional : Pssm-ID: 236718 [Multi-domain] Cd Length: 146 Bit Score: 311.58 E-value: 2.55e-111
|
|||||||
Name | Accession | Description | Interval | E-value | |||
PRK10574 | PRK10574 | putative major pilin subunit; Provisional |
1-146 | 2.55e-111 | |||
putative major pilin subunit; Provisional Pssm-ID: 236718 [Multi-domain] Cd Length: 146 Bit Score: 311.58 E-value: 2.55e-111
|
|||||||
PilA | COG4969 | Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures]; |
3-137 | 9.82e-59 | |||
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures]; Pssm-ID: 443995 [Multi-domain] Cd Length: 134 Bit Score: 178.36 E-value: 9.82e-59
|
|||||||
N_methyl | pfam07963 | Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ... |
1-25 | 6.37e-08 | |||
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596. Pssm-ID: 429756 [Multi-domain] Cd Length: 27 Bit Score: 45.83 E-value: 6.37e-08
|
|||||||
IV_pilin_GFxxxE | TIGR02532 | prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all ... |
4-27 | 1.00e-06 | |||
prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking] Pssm-ID: 274182 [Multi-domain] Cd Length: 24 Bit Score: 42.68 E-value: 1.00e-06
|
|||||||
pilin_ComGC | NF040999 | competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major ... |
4-28 | 1.63e-04 | |||
competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major pilin of a type IV pilus involved in natural transformation of monoderm bacteria (those lacking an outer membrane) such as Bacillus subtilis and Streptococcus pneumoniae. In the seed alignment, Bacillus proteins have a pair of Cys residues likely to form a disulfide bond while Streptococcus proteins lack Cys residues. Pssm-ID: 468929 Cd Length: 84 Bit Score: 38.26 E-value: 1.63e-04
|
|||||||
T4P_ComGE | NF041013 | competence type IV pilus minor pilin ComGE; |
3-38 | 9.36e-04 | |||
competence type IV pilus minor pilin ComGE; Pssm-ID: 468942 [Multi-domain] Cd Length: 83 Bit Score: 36.02 E-value: 9.36e-04
|
|||||||
Name | Accession | Description | Interval | E-value | |||
PRK10574 | PRK10574 | putative major pilin subunit; Provisional |
1-146 | 2.55e-111 | |||
putative major pilin subunit; Provisional Pssm-ID: 236718 [Multi-domain] Cd Length: 146 Bit Score: 311.58 E-value: 2.55e-111
|
|||||||
PilA | COG4969 | Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures]; |
3-137 | 9.82e-59 | |||
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures]; Pssm-ID: 443995 [Multi-domain] Cd Length: 134 Bit Score: 178.36 E-value: 9.82e-59
|
|||||||
PilE | COG4968 | Type IV pilus assembly protein PilE [Cell motility, Extracellular structures]; |
3-123 | 4.78e-22 | |||
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures]; Pssm-ID: 443994 [Multi-domain] Cd Length: 124 Bit Score: 84.74 E-value: 4.78e-22
|
|||||||
PulG | COG2165 | Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, ... |
1-63 | 1.07e-16 | |||
Type II secretory pathway, pseudopilin PulG [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Pssm-ID: 441768 [Multi-domain] Cd Length: 99 Bit Score: 70.33 E-value: 1.07e-16
|
|||||||
FimT | COG4970 | Type IV pilus assembly protein FimT [Cell motility, Extracellular structures]; |
1-47 | 2.53e-14 | |||
Type IV pilus assembly protein FimT [Cell motility, Extracellular structures]; Pssm-ID: 443996 [Multi-domain] Cd Length: 73 Bit Score: 63.33 E-value: 2.53e-14
|
|||||||
ComGC | COG4537 | Competence protein ComGC [Mobilome: prophages, transposons]; |
1-61 | 1.73e-11 | |||
Competence protein ComGC [Mobilome: prophages, transposons]; Pssm-ID: 443603 [Multi-domain] Cd Length: 108 Bit Score: 57.24 E-value: 1.73e-11
|
|||||||
PRK10506 | PRK10506 | prepilin peptidase-dependent protein; |
1-33 | 8.73e-10 | |||
prepilin peptidase-dependent protein; Pssm-ID: 236704 [Multi-domain] Cd Length: 162 Bit Score: 53.84 E-value: 8.73e-10
|
|||||||
N_methyl | pfam07963 | Prokaryotic N-terminal methylation motif; This short motif directs methylation of the ... |
1-25 | 6.37e-08 | |||
Prokaryotic N-terminal methylation motif; This short motif directs methylation of the conserved phenylalanine residue. It is most often found at the N-terminus of pilins and other proteins involved in secretion, see pfam00114, pfam05946, pfam02501 and pfam07596. Pssm-ID: 429756 [Multi-domain] Cd Length: 27 Bit Score: 45.83 E-value: 6.37e-08
|
|||||||
IV_pilin_GFxxxE | TIGR02532 | prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all ... |
4-27 | 1.00e-06 | |||
prepilin-type N-terminal cleavage/methylation domain; This model describes many but not all examples of the N-terminal region of bacterial proteins that resemble type IV pilins at their N-terminus, with a cleavage site G^FxxxE followed by a hydrophobic stretch. The new N-terminal residue, usually Phe, is methylated. Separate domains of the prepilin peptidase appear responsible for cleavage and methylation. Proteins with this N-terminal region include type IV pilins and other components of pilus biogenesis, competence proteins, and type II secretion proteins. Typically several proteins in a single operon have this N-terminal domain. The N-terminal cleavage and methylation site is described by PROSITE motif PS00409 as [KRHEQSTAG]-G-[FYLIVM]-[ST]-[LT]-[LIVP]-E-[LIVMFWSTAG](14). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking] Pssm-ID: 274182 [Multi-domain] Cd Length: 24 Bit Score: 42.68 E-value: 1.00e-06
|
|||||||
typeII_sec_gspG | TIGR01710 | type II secretion system protein G; This model represents GspG, protein G of the main terminal ... |
5-37 | 3.65e-06 | |||
type II secretion system protein G; This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis] Pssm-ID: 130771 [Multi-domain] Cd Length: 134 Bit Score: 43.57 E-value: 3.65e-06
|
|||||||
PulJ | COG4795 | Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and ... |
1-26 | 6.83e-06 | |||
Type II secretory pathway, PulJ/GspJ component [Intracellular trafficking, secretion, and vesicular transport]; Pssm-ID: 443823 [Multi-domain] Cd Length: 118 Bit Score: 42.69 E-value: 6.83e-06
|
|||||||
PilV | COG4967 | Type IV pilus assembly protein PilV [Cell motility, Extracellular structures]; |
1-45 | 1.07e-04 | |||
Type IV pilus assembly protein PilV [Cell motility, Extracellular structures]; Pssm-ID: 443993 [Multi-domain] Cd Length: 86 Bit Score: 38.81 E-value: 1.07e-04
|
|||||||
PilW | COG4966 | Type IV pilus assembly protein PilW [Cell motility, Extracellular structures]; |
1-43 | 1.24e-04 | |||
Type IV pilus assembly protein PilW [Cell motility, Extracellular structures]; Pssm-ID: 443992 [Multi-domain] Cd Length: 158 Bit Score: 39.78 E-value: 1.24e-04
|
|||||||
pilin_ComGC | NF040999 | competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major ... |
4-28 | 1.63e-04 | |||
competence type IV pilus major pilin ComGC; ComGC, encoded in the comG operon, is the major pilin of a type IV pilus involved in natural transformation of monoderm bacteria (those lacking an outer membrane) such as Bacillus subtilis and Streptococcus pneumoniae. In the seed alignment, Bacillus proteins have a pair of Cys residues likely to form a disulfide bond while Streptococcus proteins lack Cys residues. Pssm-ID: 468929 Cd Length: 84 Bit Score: 38.26 E-value: 1.63e-04
|
|||||||
typeII_sec_gspH | TIGR01708 | type II secretion system protein H; This model represents GspH, protein H of the main terminal ... |
3-122 | 4.10e-04 | |||
type II secretion system protein H; This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis] Pssm-ID: 130769 [Multi-domain] Cd Length: 143 Bit Score: 38.32 E-value: 4.10e-04
|
|||||||
Pilin | pfam00114 | Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not ... |
50-121 | 6.80e-04 | |||
Pilin (bacterial filament); Proteins with only the short N-terminal methylation site are not separated from the noise. The Prosite pattern detects those better. Pssm-ID: 395064 Cd Length: 108 Bit Score: 36.98 E-value: 6.80e-04
|
|||||||
T4P_ComGE | NF041013 | competence type IV pilus minor pilin ComGE; |
3-38 | 9.36e-04 | |||
competence type IV pilus minor pilin ComGE; Pssm-ID: 468942 [Multi-domain] Cd Length: 83 Bit Score: 36.02 E-value: 9.36e-04
|
|||||||
TIGR02596 | TIGR02596 | Verru_Chthon cassette protein D; This model describes a nearly twenty member protein family in ... |
7-42 | 3.34e-03 | |||
Verru_Chthon cassette protein D; This model describes a nearly twenty member protein family in Verrucomicrobium spinosum and a somewhat smaller paralogous family in Chthoniobacter flavus. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). These proteins occur in the four-gene Verru_Chthon cassette, in which two other genes likewise encode a cleavage/methylation domain. Most of these cassettes occur next to an unusually large PEP-CTERM protein with an autotransporter domain. [Cell envelope, Surface structures] Pssm-ID: 274219 [Multi-domain] Cd Length: 195 Bit Score: 35.91 E-value: 3.34e-03
|
|||||||
Blast search parameters | ||||
|