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Conserved domains on  [gi|446255639|ref|WP_000333494|]
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MULTISPECIES: GpE family phage tail protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_P2_GpE super family cl05840
Phage P2 GpE; This family consists of several phage and bacterial proteins which are closely ...
 10-46 2.46e-09

Phage P2 GpE; This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.


The actual alignment was detected with superfamily member pfam06528:

Pssm-ID: 428990  Cd Length: 37  Bit Score: 46.58  E-value: 2.46e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 446255639  10 VADIAAIFNWSPAEIFMMTPGEVVSWRERAALRSGNA 46
Cdd:pfam06528  1 MADIATVFHWPPSEMDGMSLTELLDWRERALRRSGAE 37
 
Name Accession Description Interval E-value
Phage_P2_GpE pfam06528
Phage P2 GpE; This family consists of several phage and bacterial proteins which are closely ...
 10-46 2.46e-09

Phage P2 GpE; This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.


Pssm-ID: 428990  Cd Length: 37  Bit Score: 46.58  E-value: 2.46e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 446255639  10 VADIAAIFNWSPAEIFMMTPGEVVSWRERAALRSGNA 46
Cdd:pfam06528  1 MADIATVFHWPPSEMDGMSLTELLDWRERALRRSGAE 37
 
Name Accession Description Interval E-value
Phage_P2_GpE pfam06528
Phage P2 GpE; This family consists of several phage and bacterial proteins which are closely ...
 10-46 2.46e-09

Phage P2 GpE; This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.


Pssm-ID: 428990  Cd Length: 37  Bit Score: 46.58  E-value: 2.46e-09
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 446255639  10 VADIAAIFNWSPAEIFMMTPGEVVSWRERAALRSGNA 46
Cdd:pfam06528  1 MADIATVFHWPPSEMDGMSLTELLDWRERALRRSGAE 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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