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Conserved domains on  [gi|446254062|ref|WP_000331917|]
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MULTISPECIES: hypothetical protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4062 super family cl16203
Domain of unknown function (DUF4062); This presumed domain is functionally uncharacterized. ...
 10-98 1.61e-06

Domain of unknown function (DUF4062); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. There is a conserved SST sequence motif.


The actual alignment was detected with superfamily member pfam13271:

Pssm-ID: 463823  Cd Length: 78  Bit Score: 44.89  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446254062   10 VMIASP-GDVAEERQVIREMIhewndinsarSKVMLTPIGWETHTSPElgVRPQELInQRLLVDCDLLIGVFWTRLGSPT 88
Cdd:pfam13271   2 VFISSTfYDLKEEREALIEAL----------LELGHIPVGMEEFPASD--ESPLDVC-LREVDECDIYILILGGRYGSID 68

                          90
                  ....*....|
gi 446254062   89 GNEASGTVEE 98
Cdd:pfam13271  69 PDGISYTELE 78
 
Name Accession Description Interval E-value
DUF4062 pfam13271
Domain of unknown function (DUF4062); This presumed domain is functionally uncharacterized. ...
 10-98 1.61e-06

Domain of unknown function (DUF4062); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. There is a conserved SST sequence motif.


Pssm-ID: 463823  Cd Length: 78  Bit Score: 44.89  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446254062   10 VMIASP-GDVAEERQVIREMIhewndinsarSKVMLTPIGWETHTSPElgVRPQELInQRLLVDCDLLIGVFWTRLGSPT 88
Cdd:pfam13271   2 VFISSTfYDLKEEREALIEAL----------LELGHIPVGMEEFPASD--ESPLDVC-LREVDECDIYILILGGRYGSID 68

                          90
                  ....*....|
gi 446254062   89 GNEASGTVEE 98
Cdd:pfam13271  69 PDGISYTELE 78
 
Name Accession Description Interval E-value
DUF4062 pfam13271
Domain of unknown function (DUF4062); This presumed domain is functionally uncharacterized. ...
 10-98 1.61e-06

Domain of unknown function (DUF4062); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. There is a conserved SST sequence motif.


Pssm-ID: 463823  Cd Length: 78  Bit Score: 44.89  E-value: 1.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446254062   10 VMIASP-GDVAEERQVIREMIhewndinsarSKVMLTPIGWETHTSPElgVRPQELInQRLLVDCDLLIGVFWTRLGSPT 88
Cdd:pfam13271   2 VFISSTfYDLKEEREALIEAL----------LELGHIPVGMEEFPASD--ESPLDVC-LREVDECDIYILILGGRYGSID 68

                          90
                  ....*....|
gi 446254062   89 GNEASGTVEE 98
Cdd:pfam13271  69 PDGISYTELE 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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