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Conserved domains on  [gi|446193100|ref|WP_000270955|]
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MULTISPECIES: putative zinc ribbon protein [Enterobacteriaceae]

Protein Classification

zinc ribbon domain-containing protein( domain architecture ID 141595)

putative zinc ribbon domain-containing protein

Gene Ontology:  GO:0008270
PubMed:  32851833

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zinc_ribbon_11 super family cl20095
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 4-121 5.93e-14

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


The actual alignment was detected with superfamily member pfam11682:

Pssm-ID: 288524  Cd Length: 127  Bit Score: 63.51  E-value: 5.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446193100    4 KSFIAFDGNGRLTGARTAQTAPYDRYTCHL-CGSALRYHPQYDTERPWFEHTDDGLTEHG-QQCPYVRPERREIQLIKRL 81
Cdd:pfam11682   4 KCYLANDAKGHFVNAKEAAKHNQGDVLCCTsCGCPLTLHNGNDCQEAWFEHDQFSIAEKIlKACAWLDPAEKEAERIKHL 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446193100   82 QQ-FVPD-ALPVVRKAsrHCRQCHHDYYGERYCTHCHTGHFS 121
Cdd:pfam11682  84 QEkIRADyALPEPNKW--FCVLCDEDYEGEKCCPACGDGIYS 123
 
Name Accession Description Interval E-value
zinc_ribbon_11 pfam11682
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 4-121 5.93e-14

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


Pssm-ID: 288524  Cd Length: 127  Bit Score: 63.51  E-value: 5.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446193100    4 KSFIAFDGNGRLTGARTAQTAPYDRYTCHL-CGSALRYHPQYDTERPWFEHTDDGLTEHG-QQCPYVRPERREIQLIKRL 81
Cdd:pfam11682   4 KCYLANDAKGHFVNAKEAAKHNQGDVLCCTsCGCPLTLHNGNDCQEAWFEHDQFSIAEKIlKACAWLDPAEKEAERIKHL 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446193100   82 QQ-FVPD-ALPVVRKAsrHCRQCHHDYYGERYCTHCHTGHFS 121
Cdd:pfam11682  84 QEkIRADyALPEPNKW--FCVLCDEDYEGEKCCPACGDGIYS 123
 
Name Accession Description Interval E-value
zinc_ribbon_11 pfam11682
Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted ...
 4-121 5.93e-14

Probable zinc-ribbon; This family of proteins with unknown function appears to be restricted to Enterobacteriaceae. It is a probably zinc-ribbon.


Pssm-ID: 288524  Cd Length: 127  Bit Score: 63.51  E-value: 5.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446193100    4 KSFIAFDGNGRLTGARTAQTAPYDRYTCHL-CGSALRYHPQYDTERPWFEHTDDGLTEHG-QQCPYVRPERREIQLIKRL 81
Cdd:pfam11682   4 KCYLANDAKGHFVNAKEAAKHNQGDVLCCTsCGCPLTLHNGNDCQEAWFEHDQFSIAEKIlKACAWLDPAEKEAERIKHL 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 446193100   82 QQ-FVPD-ALPVVRKAsrHCRQCHHDYYGERYCTHCHTGHFS 121
Cdd:pfam11682  84 QEkIRADyALPEPNKW--FCVLCDEDYEGEKCCPACGDGIYS 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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