NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446179868|ref|WP_000257723|]
View 

MULTISPECIES: DNA damage-inducible protein YebG [Salmonella]

Protein Classification

DNA damage-inducible protein YebG( domain architecture ID 10013415)

DNA damage-inducible protein YebG

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10061 PRK10061
DNA damage-inducible protein YebG; Provisional
 1-96 1.59e-55

DNA damage-inducible protein YebG; Provisional


:

Pssm-ID: 182216  Cd Length: 96  Bit Score: 166.85  E-value: 1.59e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446179868  1 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLWLAEHKEVLSTILKTGKLPSP 80
Cdd:PRK10061  1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSP 80

                        90
                ....*....|....*.
gi 446179868 81 QAVEKDAASKTKKQAA 96
Cdd:PRK10061 81 QVVGAESEEEDASHAA 96
 
Name Accession Description Interval E-value
PRK10061 PRK10061
DNA damage-inducible protein YebG; Provisional
 1-96 1.59e-55

DNA damage-inducible protein YebG; Provisional


Pssm-ID: 182216  Cd Length: 96  Bit Score: 166.85  E-value: 1.59e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446179868  1 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLWLAEHKEVLSTILKTGKLPSP 80
Cdd:PRK10061  1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSP 80

                        90
                ....*....|....*.
gi 446179868 81 QAVEKDAASKTKKQAA 96
Cdd:PRK10061 81 QVVGAESEEEDASHAA 96
YebG COG3141
dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, ...
 2-96 1.13e-37

dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, recombination and repair];


Pssm-ID: 442375  Cd Length: 100  Bit Score: 121.61  E-value: 1.13e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446179868   2 AVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLWLAEHKEVLSTILKTGKLPSPQ 81
Cdd:COG3141    1 AVEIKYVVDRDGEEKMTFTSKKEADAYDKMLDLAENLAELLEQSPVGLDEEQAEELALYLAENKDALAKALKGKKLPLSE 80

                         90
                 ....*....|....*
gi 446179868  82 AVEKDAASKTKKQAA 96
Cdd:COG3141   81 AEKEAEAAADKKKST 95
YebG pfam07130
YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in ...
 3-74 2.91e-32

YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.


Pssm-ID: 429308  Cd Length: 72  Bit Score: 107.27  E-value: 2.91e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446179868   3 VEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLWLAEHKEVLSTILKT 74
Cdd:pfam07130  1 VETKYVVVRDGEEKMTFTDKKEADAYDKMLDLADNLTDFLEQSVIGLDEAQLEELALYLAKNKDDLAAALKG 72
 
Name Accession Description Interval E-value
PRK10061 PRK10061
DNA damage-inducible protein YebG; Provisional
 1-96 1.59e-55

DNA damage-inducible protein YebG; Provisional


Pssm-ID: 182216  Cd Length: 96  Bit Score: 166.85  E-value: 1.59e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446179868  1 MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLWLAEHKEVLSTILKTGKLPSP 80
Cdd:PRK10061  1 MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTNSPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSP 80

                        90
                ....*....|....*.
gi 446179868 81 QAVEKDAASKTKKQAA 96
Cdd:PRK10061 81 QVVGAESEEEDASHAA 96
YebG COG3141
dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, ...
 2-96 1.13e-37

dsDNA-binding SOS-regulon protein YebG, induction by DNA damage requires cAMP [Replication, recombination and repair];


Pssm-ID: 442375  Cd Length: 100  Bit Score: 121.61  E-value: 1.13e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446179868   2 AVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLWLAEHKEVLSTILKTGKLPSPQ 81
Cdd:COG3141    1 AVEIKYVVDRDGEEKMTFTSKKEADAYDKMLDLAENLAELLEQSPVGLDEEQAEELALYLAENKDALAKALKGKKLPLSE 80

                         90
                 ....*....|....*
gi 446179868  82 AVEKDAASKTKKQAA 96
Cdd:COG3141   81 AEKEAEAAADKKKST 95
YebG pfam07130
YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in ...
 3-74 2.91e-32

YebG protein; This family consists of several bacterial YebG proteins of around 75 residues in length. The exact function of this protein is unknown but it is thought to be involved in the SOS response. The induction of the yebG gene occurs as cell enter into the stationary growth phase and is dependent on is dependent on cyclic AMP and H-NS.


Pssm-ID: 429308  Cd Length: 72  Bit Score: 107.27  E-value: 2.91e-32
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446179868   3 VEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQSPVVLEDGQREALSLWLAEHKEVLSTILKT 74
Cdd:pfam07130  1 VETKYVVVRDGEEKMTFTDKKEADAYDKMLDLADNLTDFLEQSVIGLDEAQLEELALYLAKNKDDLAAALKG 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH