NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446148661|ref|WP_000226516|]
View 

MULTISPECIES: PerC family transcriptional regulator [Enterobacteriaceae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PerC super family cl05552
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 2-88 1.19e-39

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


The actual alignment was detected with superfamily member pfam06069:

Pssm-ID: 310570  Cd Length: 90  Bit Score: 126.15  E-value: 1.19e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446148661   2 VAQKLEAAGCWRRASARWLFVMGNVEcTEAQREWLLLRRNYCLAQISSPPLPeKLDISEVAKAADATLRRMGIASPSGEI 81
Cdd:pfam06069  6 VAEKLEAKGFYRRAADRWAEVMVLVE-TDAERKWAAQRRAECLRKASRPPLP-PDNISEIKKAVDRTYREMGIATVSGEV 83


                 ....*..
gi 446148661  82 FRKGTPV 88
Cdd:pfam06069 84 FRNYKPV 90
 
Name Accession Description Interval E-value
PerC pfam06069
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 2-88 1.19e-39

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


Pssm-ID: 310570  Cd Length: 90  Bit Score: 126.15  E-value: 1.19e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446148661   2 VAQKLEAAGCWRRASARWLFVMGNVEcTEAQREWLLLRRNYCLAQISSPPLPeKLDISEVAKAADATLRRMGIASPSGEI 81
Cdd:pfam06069  6 VAEKLEAKGFYRRAADRWAEVMVLVE-TDAERKWAAQRRAECLRKASRPPLP-PDNISEIKKAVDRTYREMGIATVSGEV 83


                 ....*..
gi 446148661  82 FRKGTPV 88
Cdd:pfam06069 84 FRNYKPV 90
 
Name Accession Description Interval E-value
PerC pfam06069
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 2-88 1.19e-39

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


Pssm-ID: 310570  Cd Length: 90  Bit Score: 126.15  E-value: 1.19e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446148661   2 VAQKLEAAGCWRRASARWLFVMGNVEcTEAQREWLLLRRNYCLAQISSPPLPeKLDISEVAKAADATLRRMGIASPSGEI 81
Cdd:pfam06069  6 VAEKLEAKGFYRRAADRWAEVMVLVE-TDAERKWAAQRRAECLRKASRPPLP-PDNISEIKKAVDRTYREMGIATVSGEV 83


                 ....*..
gi 446148661  82 FRKGTPV 88
Cdd:pfam06069 84 FRNYKPV 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH