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Conserved domains on  [gi|446142728|ref|WP_000220583|]
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MULTISPECIES: type II toxin-antitoxin system RelE/ParE family toxin [Salmonella]

Protein Classification

type II toxin-antitoxin system RelE family toxin( domain architecture ID 10005193)

type II toxin-antitoxin (TA) system RelE family toxin is the RelE-like toxin component of a type II toxin-antitoxin system, its activity is attenuated by interaction with its cognate antitoxin

Gene Ontology:  GO:0110001|GO:0004521|GO:0017148
PubMed:  20487277|28279904
SCOP:  4003388

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RelE COG2026
mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense ...
 2-65 6.50e-14

mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense mechanisms];


:

Pssm-ID: 441629  Cd Length: 85  Bit Score: 60.98  E-value: 6.50e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446142728  2 TYELEFDPRALKEWHKLGDTVQAQLKKKLADVLLNPRIDSARL-NDPPDCYKIKLksSGYRLVYQ 65
Cdd:COG2026   1 MYKVEFTPRALKDLKKLDKKVQKRIKKKIEELAENPRPGGKKLkGSLKGLYRLRV--GDYRIIYE 63
 
Name Accession Description Interval E-value
RelE COG2026
mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense ...
 2-65 6.50e-14

mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense mechanisms];


Pssm-ID: 441629  Cd Length: 85  Bit Score: 60.98  E-value: 6.50e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446142728  2 TYELEFDPRALKEWHKLGDTVQAQLKKKLADVLLNPRIDSARL-NDPPDCYKIKLksSGYRLVYQ 65
Cdd:COG2026   1 MYKVEFTPRALKDLKKLDKKVQKRIKKKIEELAENPRPGGKKLkGSLKGLYRLRV--GDYRIIYE 63
ParE_toxin pfam05016
ParE toxin of type II toxin-antitoxin system, parDE; ParE is the toxin family of a type II ...
 5-65 1.88e-03

ParE toxin of type II toxin-antitoxin system, parDE; ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.


Pssm-ID: 398610 [Multi-domain]  Cd Length: 91  Bit Score: 34.33  E-value: 1.88e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446142728   5 LEFDPRALKEWHKLGD-------TVQAQLKKKLADVLLNPRIDSARLN-----DPPDCYKIKLKssGYRLVYQ 65
Cdd:pfam05016  1 VILTPKALKDLKKIADyiaqdnpDAAERFLKALEEALELLAENPALGRplpegGLKGLRRIRIG--DYRIIYR 71
 
Name Accession Description Interval E-value
RelE COG2026
mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense ...
 2-65 6.50e-14

mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense mechanisms];


Pssm-ID: 441629  Cd Length: 85  Bit Score: 60.98  E-value: 6.50e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446142728  2 TYELEFDPRALKEWHKLGDTVQAQLKKKLADVLLNPRIDSARL-NDPPDCYKIKLksSGYRLVYQ 65
Cdd:COG2026   1 MYKVEFTPRALKDLKKLDKKVQKRIKKKIEELAENPRPGGKKLkGSLKGLYRLRV--GDYRIIYE 63
ParE_toxin pfam05016
ParE toxin of type II toxin-antitoxin system, parDE; ParE is the toxin family of a type II ...
 5-65 1.88e-03

ParE toxin of type II toxin-antitoxin system, parDE; ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.


Pssm-ID: 398610 [Multi-domain]  Cd Length: 91  Bit Score: 34.33  E-value: 1.88e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446142728   5 LEFDPRALKEWHKLGD-------TVQAQLKKKLADVLLNPRIDSARLN-----DPPDCYKIKLKssGYRLVYQ 65
Cdd:pfam05016  1 VILTPKALKDLKKIADyiaqdnpDAAERFLKALEEALELLAENPALGRplpegGLKGLRRIRIG--DYRIIYR 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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