|
Name |
Accession |
Description |
Interval |
E-value |
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
5-252 |
4.93e-160 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 443.35 E-value: 4.93e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIqtgdsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLPTDER 84
Cdd:COG0396 1 LEIKNLHVSV------EGKEILKGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKYEVTSGSILLDGEDILELSPDER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 ARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNEILQM 164
Cdd:COG0396 75 ARAGIFLAFQYPVEIPGVSVSNFLRTALNARRGEELSAREFLKLLKEKMKELGLDEDFLDRYVNEGFSGGEKKRNEILQM 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 165 SLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALELEEK 244
Cdd:COG0396 155 LLLEPKLAILDETDSGLDIDALRIVAEGVNKLRSPDRGILIITHYQRILDYIKPDFVHVLVDGRIVKSGGKELALELEEE 234
|
....*...
gi 446058202 245 GYDWILAE 252
Cdd:COG0396 235 GYDWLKEE 242
|
|
| sufC |
TIGR01978 |
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six ... |
5-249 |
2.38e-133 |
|
FeS assembly ATPase SufC; SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 273907 [Multi-domain] Cd Length: 243 Bit Score: 375.83 E-value: 2.38e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIqtgdsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLPTDER 84
Cdd:TIGR01978 1 LKIKDLHVSV------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 ARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRG----KELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNE 160
Cdd:TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSargeEPLDLLDFEKLLKEKLALLDMDEEFLNRSVNEGFSGGEKKRNE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 161 ILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALE 240
Cdd:TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKE 234
|
....*....
gi 446058202 241 LEEKGYDWI 249
Cdd:TIGR01978 235 LEAKGYDWV 243
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
4-249 |
2.95e-130 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 368.59 E-value: 2.95e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTgdsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLPTDE 83
Cdd:CHL00131 7 ILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRG----KELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRN 159
Cdd:CHL00131 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKfqglPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 160 EILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELAL 239
Cdd:CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAK 240
|
250
....*....|
gi 446058202 240 ELEEKGYDWI 249
Cdd:CHL00131 241 ELEKKGYDWL 250
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
5-246 |
2.96e-109 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 313.31 E-value: 2.96e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIqtgdsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLPTDER 84
Cdd:cd03217 1 LEIKDLHVSV------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 ARLGIFLCFQYPTSIPGVTIGNFLktivksvrgkelpvkefrkelkesmaaldmpesfiaRYVNDGFSGGEKKRNEILQM 164
Cdd:cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL------------------------------------RYVNEGFSGGEKKRNEILQL 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 165 SLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELALELEEK 244
Cdd:cd03217 119 LLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKK 198
|
..
gi 446058202 245 GY 246
Cdd:cd03217 199 GY 200
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
4-249 |
9.06e-98 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 285.92 E-value: 9.06e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIqtgdsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLPTDE 83
Cdd:PRK09580 1 MLSIKDLHVSV------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRG----KELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRN 159
Cdd:PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSyrgqEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 160 EILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTGTRELAL 239
Cdd:PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 234
|
250
....*....|
gi 446058202 240 ELEEKGYDWI 249
Cdd:PRK09580 235 QLEEQGYGWL 244
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-240 |
5.44e-36 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 133.49 E-value: 5.44e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYQVLSGDILFEGKSILNL 79
Cdd:COG1123 1 MTPLLEVRDLSVRYPGGD----VPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGlLPHGGRISGEVLLDGRDLLEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 80 PTDERARLgIFLCFQYP-TSIPGVTIGNFlktIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKR 158
Cdd:COG1123 77 SEALRGRR-IGMVFQDPmTQLNPVTVGDQ---IAEALENLGLSRAEARARVLELLEAVGL-ERRLDRYPHQ-LSGGQRQR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 159 NEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHYQRMLNYItPDFVHVFAKGKILKTGTREL 237
Cdd:COG1123 151 VAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRElQRERGTTVLLITHDLGVVAEI-ADRVVVMDDGRIVEDGPPEE 229
|
...
gi 446058202 238 ALE 240
Cdd:COG1123 230 ILA 232
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-233 |
3.02e-32 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 117.61 E-value: 3.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTGdsGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSILNLPTDE 83
Cdd:cd03257 1 LLEVKNLSVSFPTG--GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLG--IFLCFQYP-TSI-PGVTIGNFLKTIVKsVRGKELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRN 159
Cdd:cd03257 77 RKIRRkeIQMVFQDPmSSLnPRMTIGEQIAEPLR-IHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHE-LSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 160 EIlQMSL-LKPKLSVLDETDSGLDIDA----LRIVSEGINRNKTperSILLITHYQRMLNYITpDFVHVFAKGKILKTG 233
Cdd:cd03257 155 AI-ARALaLNPKLLIADEPTSALDVSVqaqiLDLLKKLQEELGL---TLLFITHDLGVVAKIA-DRVAVMYAGKIVEEG 228
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
23-243 |
7.30e-31 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 114.39 E-value: 7.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERARLGIflCFQYPTSIP 100
Cdd:COG1131 13 KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGllRPT----SGEVRVLGEDVARDPAEVRRRIGY--VPQEPALYP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 101 GVTIGNFLKtIVKSVRGkeLPVKEFRKELKESMAALDMPEsFIARYVnDGFSGGEKKRNEILQmSLL-KPKLSVLDETDS 179
Cdd:COG1131 87 DLTVRENLR-FFARLYG--LPRKEARERIDELLELFGLTD-AADRKV-GTLSGGMKQRLGLAL-ALLhDPELLILDEPTS 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 180 GLDIDALRIVSEGINRNKTPERSILLITHY----QRMLNYITpdfvhVFAKGKILKTGTRE--LALELEE 243
Cdd:COG1131 161 GLDPEARRELWELLRELAAEGKTVLLSTHYleeaERLCDRVA-----IIDKGRIVADGTPDelKARLLED 225
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
26-176 |
1.26e-29 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 108.50 E-value: 1.26e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSIlNLPTDERARLGIFLCFQYPTSIPGVTIG 105
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPT--EGTILLDGQDL-TDDERKSLRKEIGYVFQDPQLFPRLTVR 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 106 NflkTIVKSVRGKELPVKEFRKELKESMAALDMPE--SFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:pfam00005 78 E---NLRLGLLLKGLSKREKDARAEEALEKLGLGDlaDRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDE 147
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-236 |
2.44e-29 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 115.00 E-value: 2.44e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTGDSGEIKeIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPT 81
Cdd:COG1123 260 LLEVRNLSKRYPVRGKGGVR-AVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGllRPT----SGSILFDGKDLTKLSR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 82 DERARLG--IFLCFQYPTS--IPGVTIGnflKTIVKSVR-GKELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEK 156
Cdd:COG1123 335 RSLRELRrrVQMVFQDPYSslNPRMTVG---DIIAEPLRlHGLLSRAERRERVAELLERVGLPPDLADRYPHE-LSGGQR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 157 KRNEILQMSLLKPKLSVLDETDSGLD-------IDALRivsegiNRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKI 229
Cdd:COG1123 411 QRVAIARALALEPKLLILDEPTSALDvsvqaqiLNLLR------DLQRELGLTYLFISHDLAVVRYIA-DRVAVMYDGRI 483
|
....*..
gi 446058202 230 LKTGTRE 236
Cdd:COG1123 484 VEDGPTE 490
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
26-234 |
6.05e-29 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 109.45 E-value: 6.05e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGVTIG 105
Cdd:cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG--FLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 NFLKTIVKSVRGKELPVKEFRKELKESMA-ALDMPESF----IARYVNDGFSGGEKKRNEIlQMSL-LKPKLSVLDETDS 179
Cdd:cd03219 94 ENVMVAAQARTGSGLLLARARREEREARErAEELLERVgladLADRPAGELSYGQQRRLEI-ARALaTDPKLLLLDEPAA 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 180 GLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGT 234
Cdd:cd03219 173 GLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA-DRVTVLDQGRVIAEGT 226
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
5-208 |
2.04e-27 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 104.51 E-value: 2.04e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLkaGIQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYqvlSGDILFEGKSILNLPTDE 83
Cdd:COG4619 1 LELEGL--SFRVGG----KPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADlDPPT---SGEIYLDGKPLSAMPPPE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 -RARlgIFLCFQYPTSIPGvTIGNFLKTiVKSVRGKELPvkefRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEIL 162
Cdd:COG4619 72 wRRQ--VAYVPQEPALWGG-TVRDNLPF-PFQLRERKFD----RERALELLERLGLPPDILDKPVER-LSGGERQRLALI 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446058202 163 QMSLLKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITH 208
Cdd:COG4619 143 RALLLQPDVLLLDEPTSALDPENTRRVEELLREyLAEEGRAVLWVSH 189
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
23-228 |
1.36e-26 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 100.78 E-value: 1.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPtDERARLGIFLCFQyptsipgv 102
Cdd:cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEILIDGKDIAKLP-LEELRRRIGYVPQ-------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tignflktivksvrgkelpvkefrkelkesmaaldmpesfiaryvndgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:cd00267 81 ------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446058202 183 IDALRIVSEGINRNKTPERSILLITHYQRMLNYItPDFVHVFAKGK 228
Cdd:cd00267 113 PASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVLKDGK 157
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-234 |
1.64e-26 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 103.58 E-value: 1.64e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNL-KA--GIQtgdsgeikeIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSIL 77
Cdd:COG0411 1 SDPLLEVRGLtKRfgGLV---------AVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGF--YRPTSGRILFDGRDIT 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 78 NLPTDERARLGIFLCFQYPTSIPG------VTIGNFLKT---IVKSVRGKELPVKEFRKELKESMAALDMPEsfIARYVN 148
Cdd:COG0411 70 GLPPHRIARLGIARTFQNPRLFPEltvlenVLVAAHARLgrgLLAALLRLPRARREEREARERAEELLERVG--LADRAD 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 149 D---GFSGGEKKRNEILqMSL-LKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHYQRMLNYITpDFVHV 223
Cdd:COG0411 148 EpagNLSYGQQRRLEIA-RALaTEPKLLLLDEPAAGLNPEETEELAELIRRlRDERGITILLIEHDMDLVMGLA-DRIVV 225
|
250
....*....|.
gi 446058202 224 FAKGKILKTGT 234
Cdd:COG0411 226 LDFGRVIAEGT 236
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-208 |
3.19e-26 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 103.98 E-value: 3.19e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTGDsGEIKeIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYQVLSGDILFEGKSILNLPTD 82
Cdd:COG0444 1 LLEVRNLKVYFPTRR-GVVK-AVDGVSFDVRRGETLGLVGESGSGKSTLARAILGlLPPPGITSGEILFDGEDLLKLSEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 83 ERARL---GIFLCFQYP-TSI-PGVTIGNFLKTIVKSVRGkeLPVKEFRKELKESMAA--LDMPESFIARYVNDgFSGGE 155
Cdd:COG0444 79 ELRKIrgrEIQMIFQDPmTSLnPVMTVGDQIAEPLRIHGG--LSKAEARERAIELLERvgLPDPERRLDRYPHE-LSGGM 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 156 KKRNEILqMSL-LKPKLSVLDETDSGLD-------IDALR-IVSE-GInrnktperSILLITH 208
Cdd:COG0444 156 RQRVMIA-RALaLEPKLLIADEPTTALDvtiqaqiLNLLKdLQRElGL--------AILFITH 209
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
23-228 |
3.80e-26 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 101.39 E-value: 3.80e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERARLgIFLCFQYPTSipgv 102
Cdd:cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT--SGEVLVDGKDLTKLSLKELRRK-VGLVFQNPDD---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tigNFLKTIVK-----SVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDET 177
Cdd:cd03225 87 ---QFFGPTVEeevafGLENLGLPEEEIEERVEEALELVGL-EGLRDRSPFT-LSGGQKQRVAIAGVLAMDPDILLLDEP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446058202 178 DSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGK 228
Cdd:cd03225 162 TAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA-DRVIVLEDGK 211
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
23-244 |
2.20e-25 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 99.93 E-value: 2.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERARLGIFlcfqyPTSIPGV 102
Cdd:COG4555 14 VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPD--SGSILIDGEDVRKEPREARRQIGVL-----PDERGLY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPEsFIARYVNdGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:COG4555 87 DRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEE-FLDRRVG-ELSTGMKKKVALARALVHDPKVLLLDEPTNGLD 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446058202 183 IDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGTRELALELEEK 244
Cdd:COG4555 165 VMARRLLREILRALKKEGKTVLFSSHIMQEVEALC-DRVVILHKGKVVAQGSLDELREEIGE 225
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-236 |
1.15e-24 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 98.34 E-value: 1.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIQTGDSGeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYqvlSGDILFEGKSIlnlptdE 83
Cdd:COG1124 2 LEVRNLSVSYGQGGRR--VPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGlERPW---SGEVTFDGRPV------T 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLGIFLC-----FQYPTSI--PGVTIGNFLKTIVKSVRgkelpVKEFRKELKESMAALDMPESFIARYVNDgFSGGEK 156
Cdd:COG1124 71 RRRRKAFRRrvqmvFQDPYASlhPRHTVDRILAEPLRIHG-----LPDREERIAELLEQVGLPPSFLDRYPHQ-LSGGQR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 157 KRNEILQMSLLKPKLSVLDETDSGLD----------IDALRiVSEGInrnktperSILLITHYQRMLNYITpDFVHVFAK 226
Cdd:COG1124 145 QRVAIARALILEPELLLLDEPTSALDvsvqaeilnlLKDLR-EERGL--------TYLFVSHDLAVVAHLC-DRVAVMQN 214
|
250
....*....|
gi 446058202 227 GKILKTGTRE 236
Cdd:COG1124 215 GRIVEELTVA 224
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
2-92 |
2.11e-24 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 97.36 E-value: 2.11e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 2 TEILKIQNLKAGIqtgdsGEIkEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSILNLPT 81
Cdd:COG0410 1 MPMLEVENLHAGY-----GGI-HVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLP--PRSGSIRFDGEDITGLPP 72
|
90
....*....|.
gi 446058202 82 DERARLGIFLC 92
Cdd:COG0410 73 HRIARLGIGYV 83
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-236 |
7.07e-24 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 96.27 E-value: 7.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTgdsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPT 81
Cdd:COG1120 1 MLEAENLSVGYGG------RPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGllKPS----SGEVLLDGRDLASLSR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 82 DERARLgIFLCFQYPTSIPGVTignflktiVKSV---------RGKELPVKEFRKELKESMAALDMpESFIARYVNDgFS 152
Cdd:COG1120 71 RELARR-IAYVPQEPPAPFGLT--------VRELvalgryphlGLFGRPSAEDREAVEEALERTGL-EHLADRPVDE-LS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 153 GGEKkrneilQMSLL------KPKLSVLDETDSGLDI----DALRIVSEginRNKTPERSILLITHYqrmLN----YItp 218
Cdd:COG1120 140 GGER------QRVLIaralaqEPPLLLLDEPTSHLDLahqlEVLELLRR---LARERGRTVVMVLHD---LNlaarYA-- 205
|
250
....*....|....*...
gi 446058202 219 DFVHVFAKGKILKTGTRE 236
Cdd:COG1120 206 DRLVLLKDGRIVAQGPPE 223
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
23-244 |
7.32e-24 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 95.86 E-value: 7.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDE-RARLGifLCFQYPTS- 98
Cdd:COG1122 14 TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGllKPT----SGEVLVDGKDITKKNLRElRRKVG--LVFQNPDDq 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 IpgvtignFLKTIVKSV------RGkeLPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEIlqMSLL--KPK 170
Cdd:COG1122 88 L-------FAPTVEEDVafgpenLG--LPREEIRERVEEALELVGL-EHLADRPPHE-LSGGQKQRVAI--AGVLamEPE 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446058202 171 LSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGTRELALELEEK 244
Cdd:COG1122 155 VLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELA-DRVIVLDDGRIVADGTPREVFSDYEL 227
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
5-236 |
9.30e-24 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 95.19 E-value: 9.30e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIqtgdsGEIkEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDER 84
Cdd:cd03224 1 LEVENLNAGY-----GKS-QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGSIRFDGRDITGLPPHER 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 ARLGIFLCFQYPTSIPGVTIG-NFL---KTIVKSVRGKEL-------PV-KEFRKELKESMaaldmpesfiaryvndgfS 152
Cdd:cd03224 73 ARAGIGYVPEGRRIFPELTVEeNLLlgaYARRRAKRKARLervyelfPRlKERRKQLAGTL------------------S 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 153 GGEKkrneilQM-----SLL-KPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAK 226
Cdd:cd03224 135 GGEQ------QMlaiarALMsRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIA-DRAYVLER 207
|
250
....*....|
gi 446058202 227 GKILKTGTRE 236
Cdd:cd03224 208 GRVVLEGTAA 217
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
5-187 |
3.83e-22 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 90.62 E-value: 3.83e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLkaGIQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGH--PKYQVlSGDILFEGKSILNLPTD 82
Cdd:COG4136 2 LSLENL--TITLGG----RPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTlsPAFSA-SGEVLLNGRRLTALPAE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 83 ERaRLGIFlcFQYPTSIPGVTIG-NFLKTIVKSVRGKElpvkefRKElkESMAALDMPE--SFIARYVnDGFSGGEKKRN 159
Cdd:COG4136 75 QR-RIGIL--FQDDLLFPHLSVGeNLAFALPPTIGRAQ------RRA--RVEQALEEAGlaGFADRDP-ATLSGGQRARV 142
|
170 180
....*....|....*....|....*...
gi 446058202 160 EILQMSLLKPKLSVLDETDSGLDiDALR 187
Cdd:COG4136 143 ALLRALLAEPRALLLDEPFSKLD-AALR 169
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
19-254 |
6.81e-22 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 94.52 E-value: 6.81e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 19 SGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDE-RARLGIFL--CFQY 95
Cdd:COG2274 484 PGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGL--YEPTSGRILIDGIDLRQIDPASlRRQIGVVLqdVFLF 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 96 PTSI--------PGVTignfLKTIVKSVRgkelpvkefrkelkesMAALDmpeSFIAR-------YVNDG---FSGGEKK 157
Cdd:COG2274 562 SGTIrenitlgdPDAT----DEEIIEAAR----------------LAGLH---DFIEAlpmgydtVVGEGgsnLSGGQRQ 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 158 RNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKtPERSILLITHYQRMLNYItpDFVHVFAKGKILKTGTREl 237
Cdd:COG2274 619 RLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAHRLSTIRLA--DRIIVLDKGRIVEDGTHE- 694
|
250
....*....|....*..
gi 446058202 238 ALeLEEKGYDWILAESK 254
Cdd:COG2274 695 EL-LARKGLYAELVQQQ 710
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
24-236 |
8.19e-22 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 90.12 E-value: 8.19e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERARLGIflCFQYPTSIPGVT 103
Cdd:cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT--SGRATVAGHDVVREPREVRRRIGI--VFQDLSVDDELT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 104 IGNFLkTIVKSVRGkeLPVKEFRKELKESMAALDMPEsFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDI 183
Cdd:cd03265 90 GWENL-YIHARLYG--VPGAERRERIDELLDFVGLLE-AADRLVKT-YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDP 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446058202 184 DALRIVSEGINR-NKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGTRE 236
Cdd:cd03265 165 QTRAHVWEYIEKlKEEFGMTILLTTHYMEEAEQLC-DRVAIIDHGRIIAEGTPE 217
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
25-234 |
9.51e-22 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 90.37 E-value: 9.51e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSILNLPTDERarlGIFLCFQYPTSIPGVTI 104
Cdd:cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKR---PVNTVFQNYALFPHLTV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 GnflKTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDID 184
Cdd:cd03300 90 F---ENIAFGLRLKKLPKAEIKERVAEALDLVQL-EGYANRKPSQ-LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 185 aLR--IVSEGINRNKTPERSILLITHYQR----MLNYITpdfvhVFAKGKILKTGT 234
Cdd:cd03300 165 -LRkdMQLELKRLQKELGITFVFVTHDQEealtMSDRIA-----VMNKGKIQQIGT 214
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
19-228 |
9.59e-22 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 88.59 E-value: 9.59e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 19 SGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERARLgIFLCFQYPts 98
Cdd:cd03228 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGEILIDGVDLRDLDLESLRKN-IAYVPQDP-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 ipgvtignFLktivksvrgkelpvkeFRKELKESMaaldmpesfiaryvndgFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:cd03228 86 --------FL----------------FSGTIRENI-----------------LSGGQRQRIAIARALLRDPPILILDEAT 124
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446058202 179 SGLDIDALRIVSEGINRNkTPERSILLITHyqRMLNYITPDFVHVFAKGK 228
Cdd:cd03228 125 SALDPETEALILEALRAL-AKGKTVIVIAH--RLSTIRDADRIIVLDDGR 171
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
23-236 |
1.39e-21 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 89.91 E-value: 1.39e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGV 102
Cdd:cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNFLKTIvksVRGKELPVKEFRKELKESMAALDMpeSFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:cd03218 91 TVEENILAV---LEIRGLSKKEREEKLEELLEEFHI--THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 183 IDALRIVSEGINRNKtpERSI-LLIT-HYQRMLNYITpDFVHVFAKGKILKTGTRE 236
Cdd:cd03218 166 PIAVQDIQKIIKILK--DRGIgVLITdHNVRETLSIT-DRAYIIYEGKVLAEGTPE 218
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
21-208 |
1.44e-21 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 93.17 E-value: 1.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 21 EIKEIVK---------GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGK--SILNlPTDERArLGI 89
Cdd:COG3845 7 ELRGITKrfggvvandDVSLTVRPGEIHALLGENGAGKSTLMKILYGL--YQPDSGEILIDGKpvRIRS-PRDAIA-LGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 90 FLCFQYPTSIPGVTIgnfLKTIV---KSVRGKELPVKEFRKELKESMAALDM---PEsfiaRYVNDgFSGGEKKRNEILQ 163
Cdd:COG3845 83 GMVHQHFMLVPNLTV---AENIVlglEPTKGGRLDRKAARARIRELSERYGLdvdPD----AKVED-LSVGEQQRVEILK 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446058202 164 MSLLKPKLSVLDETDSGL---DIDAL-----RIVSEGinrnktpeRSILLITH 208
Cdd:COG3845 155 ALYRGARILILDEPTAVLtpqEADELfeilrRLAAEG--------KSIIFITH 199
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-244 |
4.63e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 88.82 E-value: 4.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKagIQTGDSgeikEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNV----IMGHPKYQVlSGDILFEGKSILNLP 80
Cdd:PRK14247 4 IEIRDLK--VSFGQV----EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVfnrlIELYPEARV-SGEVYLDGQDIFKMD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 81 TDErARLGIFLCFQYPTSIPGVTI------GNFLKTIVKSVRGKELPVKEFRKELK---ESMAALDMPESfiaryvndGF 151
Cdd:PRK14247 77 VIE-LRRRVQMVFQIPNPIPNLSIfenvalGLKLNRLVKSKKELQERVRWALEKAQlwdEVKDRLDAPAG--------KL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 152 SGGEKKRNEILQMSLLKPKLSVLDETDSGLD-IDALRIVSEGINRNKtpERSILLITHYQRMLNYITpDFVHVFAKGKIL 230
Cdd:PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDpENTAKIESLFLELKK--DMTIVLVTHFPQQAARIS-DYVAFLYKGQIV 224
|
250
....*....|....*....
gi 446058202 231 KTG-TRELAL----ELEEK 244
Cdd:PRK14247 225 EWGpTREVFTnprhELTEK 243
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
23-229 |
5.73e-21 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 86.68 E-value: 5.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERARLGIflCFQYPTSIPGV 102
Cdd:cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD--SGEIKVLGKDIKKEPEEVKRRIGY--LPEEPSLYENL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNFLKtivksvrgkelpvkefrkelkesmaaldmpesfiaryvndgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:cd03230 89 TVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446058202 183 IDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKI 229
Cdd:cd03230 128 PESRREFWELLRELKKEGKTILLSSHILEEAERLC-DRVAILNNGRI 173
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-208 |
9.02e-21 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 87.46 E-value: 9.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 2 TEILKIQNLkaGIQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNL 79
Cdd:PRK10247 5 SPLLQLQNV--GYLAGD----AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASliSPT----SGTLLFEGEDISTL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 80 PTdERARLGIFLCFQYPtSIPGVTIGNFLKtIVKSVRGKELPVKEFRKELkesmAALDMPESFIARYVNDgFSGGEKKRN 159
Cdd:PRK10247 75 KP-EIYRQQVSYCAQTP-TLFGDTVYDNLI-FPWQIRNQQPDPAIFLDDL----ERFALPDTILTKNIAE-LSGGEKQRI 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446058202 160 EILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITH 208
Cdd:PRK10247 147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRyVREQNIAVLWVTH 196
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
5-233 |
4.49e-20 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 85.26 E-value: 4.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLkagiqTGDSGEiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTD 82
Cdd:cd03259 1 LELKGL-----SKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGleRPD----SGEILIDGRDVTGVPPE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 83 ERarlGIFLCFQYPTSIPGVTIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDMPEsFIARYVnDGFSGGEKKRNEIL 162
Cdd:cd03259 71 RR---NIGMVFQDYALFPHLTV---AENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYP-HELSGGQQQRVALA 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 163 QMSLLKPKLSVLDETDSGLDI---DALRI-VSEGINRNKTPersILLITHYQRMLNYITpDFVHVFAKGKILKTG 233
Cdd:cd03259 143 RALAREPSLLLLDEPLSALDAklrEELREeLKELQRELGIT---TIYVTHDQEEALALA-DRIAVMNEGRIVQVG 213
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
23-233 |
6.59e-20 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 84.94 E-value: 6.59e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGeVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERARLGifLCFQYPTSIP 100
Cdd:cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATltPPS----SGTIRIDGQDVLKQPQKLRRRIG--YLPQEFGVYP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 101 GVTIGNFLKTIvksVRGKELPVKEFRKELKESMAALDMPEsFIARYVNdGFSGGEKKRNEILQMSLLKPKLSVLDETDSG 180
Cdd:cd03264 86 NFTVREFLDYI---AWLKGIPSKEVKARVDEVLELVNLGD-RAKKKIG-SLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 181 LDIdALRIVSEGINRNKTPERSILLITHyqrmlnyITPDF------VHVFAKGKILKTG 233
Cdd:cd03264 161 LDP-EERIRFRNLLSELGEDRIVILSTH-------IVEDVeslcnqVAVLNKGKLVFEG 211
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
23-236 |
1.05e-19 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 84.54 E-value: 1.05e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG---HPKYQVLSGDILFEGKSILNLPTDE---RARLGifLCFQYP 96
Cdd:cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndLIPGAPDEGEVLLDGKDIYDLDVDVlelRRRVG--MVFQKP 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIPGvtignflkTIVKSVR-----GKELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNEILQMSLLKPKL 171
Cdd:cd03260 91 NPFPG--------SIYDNVAyglrlHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 172 SVLDETDSGLDIDALRIVSEGINRNKTpERSILLITH----YQRMlnyitPDFVHVFAKGKILKTGTRE 236
Cdd:cd03260 163 LLLDEPTSALDPISTAKIEELIAELKK-EYTIVIVTHnmqqAARV-----ADRTAFLLNGRLVEFGPTE 225
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
20-208 |
6.14e-19 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 81.92 E-value: 6.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKsilNLPTDERARlGIFLCFQYPTS- 98
Cdd:cd03226 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES--SGSILLNGK---PIKAKERRK-SIGYVMQDVDYq 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 IPGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPESfiaryvndgFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:cd03226 84 LFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPT 154
|
170 180 190
....*....|....*....|....*....|
gi 446058202 179 SGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITH 184
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
23-208 |
8.01e-19 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 80.94 E-value: 8.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERARLgifLCFqyptsipgv 102
Cdd:cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS--SGEILLDGKDLASLSPKELARK---IAY--------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tignflktivksvrgkelpvkefrkeLKESMAALDMpESFIARYVNDgFSGGEKKRnEILQMSLL-KPKLSVLDETDSGL 181
Cdd:cd03214 78 --------------------------VPQALELLGL-AHLADRPFNE-LSGGERQR-VLLARALAqEPPILLLDEPTSHL 128
|
170 180 190
....*....|....*....|....*....|.
gi 446058202 182 DI----DALRIVSEginRNKTPERSILLITH 208
Cdd:cd03214 129 DIahqiELLELLRR---LARERGKTVVMVLH 156
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
25-234 |
9.34e-19 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 81.78 E-value: 9.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERARLGIflCFQYPTSIPGVTI 104
Cdd:cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG--ELRPTSGTAYINGYSIRTDRKAARQSLGY--CPQFDALFDELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 GNFLKtIVKSVRGkeLPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRneiLQ--MSLL-KPKLSVLDETDSGL 181
Cdd:cd03263 93 REHLR-FYARLKG--LPKSEIKEEVELLLRVLGL-TDKANKRART-LSGGMKRK---LSlaIALIgGPSVLLLDEPTSGL 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446058202 182 DIDALRIVSEGINRNKtPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGT 234
Cdd:cd03263 165 DPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALC-DRIAIMSDGKLRCIGS 215
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
5-215 |
2.67e-18 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 80.61 E-value: 2.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIQTGDsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDER 84
Cdd:cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT--SGEVRVDGTDISKLSEKEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 ARL-----GIFlcFQYPTSIPGVTIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDMPESfIARYVNDgFSGGEKKRN 159
Cdd:cd03255 77 AAFrrrhiGFV--FQSFNLLPDLTA---LENVELPLLLAGVPKKERRERAEELLERVGLGDR-LNHYPSE-LSGGQQQRV 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 160 EILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHYQRMLNY 215
Cdd:cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRElNKEAGTTIVVVTHDPELAEY 206
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
2-236 |
3.57e-18 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 80.90 E-value: 3.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 2 TEILKIQNlkAGIQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYqvlSGDI-LFeGK---- 74
Cdd:COG1119 1 DPLLELRN--VTVRRGG----KTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGdlPPTY---GNDVrLF-GErrgg 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 75 -SILNLptdeRARLGIF---LCFQYPTSIPG--VTIGNFLKTIVksvRGKELPVKEfRKELKESMAALDMpESFIARYVN 148
Cdd:COG1119 71 eDVWEL----RKRIGLVspaLQLRFPRDETVldVVLSGFFDSIG---LYREPTDEQ-RERARELLELLGL-AHLADRPFG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 149 DgFSGGEKKRNEILQmSLLK-PKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHYqrmLNYITPDFVHV--F 224
Cdd:COG1119 142 T-LSQGEQRRVLIAR-ALVKdPELLILDEPTAGLDLGARELLLALLDKlAAEGAPTLVLVTHH---VEEIPPGITHVllL 216
|
250
....*....|..
gi 446058202 225 AKGKILKTGTRE 236
Cdd:COG1119 217 KDGRVVAAGPKE 228
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
20-246 |
7.77e-18 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 82.51 E-value: 7.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDE-RARLGifLCFQYP-- 96
Cdd:COG4987 345 GAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRF--LDPQSGSITLGGVDLRDLDEDDlRRRIA--VVPQRPhl 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 --TSI--------PGVTignflktivksvrgkelpvkefRKELKESM--AALDmpeSFIARyVNDG-----------FSG 153
Cdd:COG4987 421 fdTTLrenlrlarPDAT----------------------DEELWAALerVGLG---DWLAA-LPDGldtwlgeggrrLSG 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 154 GEKKRneI-LQMSLLKPK-LSVLDETDSGLDIDALRIVSEGInRNKTPERSILLITHYQRMLNYItpDFVHVFAKGKILK 231
Cdd:COG4987 475 GERRR--LaLARALLRDApILLLDEPTEGLDAATEQALLADL-LEALAGRTVLLITHRLAGLERM--DRILVLEDGRIVE 549
|
250
....*....|....*.
gi 446058202 232 TGT-RELaleLEEKGY 246
Cdd:COG4987 550 QGThEEL---LAQNGR 562
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-236 |
1.11e-17 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 81.65 E-value: 1.11e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYQVLSGDILFEGKSILN 78
Cdd:COG4172 3 SMPLLSVEDLSVAFGQGG--GTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRllPDPAAHPSGSILFDGQDLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 79 LPTDERARL---GIFLCFQYP-TSI-PGVTIGNFLKTIVKSVRGkeLPVKEFRKElkesmaALDM--------PESFIAR 145
Cdd:COG4172 81 LSERELRRIrgnRIAMIFQEPmTSLnPLHTIGKQIAEVLRLHRG--LSGAAARAR------ALELlervgipdPERRLDA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 146 YVNDgFSGGEKKRNEIlQMSLL-KPKLSVLDETDSGLD------IDAL--RIVSE-GInrnktperSILLITH----YQR 211
Cdd:COG4172 153 YPHQ-LSGGQRQRVMI-AMALAnEPDLLIADEPTTALDvtvqaqILDLlkDLQRElGM--------ALLLITHdlgvVRR 222
|
250 260
....*....|....*....|....*
gi 446058202 212 MlnyitPDFVHVFAKGKILKTGTRE 236
Cdd:COG4172 223 F-----ADRVAVMRQGEIVEQGPTA 242
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-208 |
1.31e-17 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 79.36 E-value: 1.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTgdsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSilnlP 80
Cdd:COG1121 3 MMPAIELENLTVSYGG------RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILG--LLPPTSGTVRLFGKP----P 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 81 TDERARLGiflcfqY-------PTSIPgVTIGNFLKT-IVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFS 152
Cdd:COG1121 71 RRARRRIG------YvpqraevDWDFP-ITVRDVVLMgRYGRRGLFRRPSRADREAVDEALERVGL-EDLADRPIGE-LS 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 153 GGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:COG1121 142 GGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTH 197
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
27-212 |
1.39e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 81.60 E-value: 1.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 27 KGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYqvlSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGVTI- 104
Cdd:COG1129 21 DGVSLELRPGEVHALLGENGAGKSTLMKILSGvYQPD---SGEILLDGEPVRFRSPRDAQAAGIAIIHQELNLVPNLSVa 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 -----GNFLKtivksvRGKELPVKEFRKELKESMAALDMPESFIARyVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:COG1129 98 eniflGREPR------RGGLIDWRAMRRRARELLARLGLDIDPDTP-VGD-LSVAQQQLVEIARALSRDARVLILDEPTA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 446058202 180 GL---DIDAL-RIV----SEGInrnktperSILLITHyqRM 212
Cdd:COG1129 170 SLterEVERLfRIIrrlkAQGV--------AIIYISH--RL 200
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
25-208 |
1.59e-17 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 78.29 E-value: 1.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERARLGIflCFQYPTSIPGVTI 104
Cdd:COG4133 17 LFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGL--LPPSAGEVLWNGEPIRDAREDYRRRLAY--LGHADGLKPELTV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 GNFLkTIVKSVRGKELPvkefRKELKESMAALDMP--ESFIARYvndgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:COG4133 93 RENL-RFWAALYGLRAD----REAIDEALEAVGLAglADLPVRQ----LSAGQKRRVALARLLLSPAPLWLLDEPFTALD 163
|
170 180
....*....|....*....|....*.
gi 446058202 183 IDALRIVSEGINRNKTPERSILLITH 208
Cdd:COG4133 164 AAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
23-233 |
1.65e-17 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 78.47 E-value: 1.65e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGH-PKYQVLSGDILFEGKsilnlptdERARLGIFLCF----QYPT 97
Cdd:cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRvEGGGTTSGQILFNGQ--------PRKPDQFQKCVayvrQDDI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 98 SIPGVTIGNFLKTIVKSvRGKELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDET 177
Cdd:cd03234 92 LLPGLTVRETLTYTAIL-RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEP 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 178 DSGLD----IDALRIVSEGINRNKTpersILLITHYQRMLNYITPDFVHVFAKGKILKTG 233
Cdd:cd03234 171 TSGLDsftaLNLVSTLSQLARRNRI----VILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-87 |
1.76e-17 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 78.55 E-value: 1.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILN 78
Cdd:COG1136 1 MSPLLELRNLTKSYGTGE--GEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGldRPT----SGEVLIDGQDISS 74
|
....*....
gi 446058202 79 LPTDERARL 87
Cdd:COG1136 75 LSERELARL 83
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
23-245 |
2.58e-17 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 80.96 E-value: 2.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERARLgIFLCFQYPTSIPG- 101
Cdd:COG4988 350 RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGF--LPPYSGSILINGVDLSDLDPASWRRQ-IAWVPQNPYLFAGt 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 ----VTIGNF------LKTIVKSVRgkelpVKEFRKELKESmaaLDMPesfiaryVND---GFSGGEKKRNEILQMSLLK 168
Cdd:COG4988 427 irenLRLGRPdasdeeLEAALEAAG-----LDEFVAALPDG---LDTP-------LGEggrGLSGGQAQRLALARALLRD 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 169 PKLSVLDETDSGLDIDALRIVSEGINRNKtPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRElalELEEKG 245
Cdd:COG4988 492 APLLLLDEPTAHLDAETEAEILQALRRLA-KGRTVILITH--RLALLAQADRILVLDDGRIVEQGTHE---ELLAKN 562
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
17-208 |
2.64e-17 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 77.90 E-value: 2.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 17 GDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSIlnlpTDERARLGIFlcFQYP 96
Cdd:cd03293 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT--SGEVLVDGEPV----TGPGPDRGYV--FQQD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIPGVTIgnfLKTIVKSVRGKELPVKEfRKElkESMAALDMP--ESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVL 174
Cdd:cd03293 83 ALLPWLTV---LDNVALGLELQGVPKAE-ARE--RAEELLELVglSGFENAYPHQ-LSGGMRQRVALARALAVDPDVLLL 155
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446058202 175 DETDSGLDI--------DALRIVSEginRNKTpersILLITH 208
Cdd:cd03293 156 DEPFSALDAltreqlqeELLDIWRE---TGKT----VLLVTH 190
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-243 |
3.27e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 78.98 E-value: 3.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNvimgHPKYQVL--SGDILFEGKSILN 78
Cdd:PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAK----HMNALLIpsEGKVYVDGLDTSD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 79 LPT--DERARLGifLCFQYPTSipgvtigNFLKTIVKS--VRGKE---LPVKEFRKELKESMAALDMPEsfIARYVNDGF 151
Cdd:PRK13633 77 EENlwDIRNKAG--MVFQNPDN-------QIVATIVEEdvAFGPEnlgIPPEEIRERVDESLKKVGMYE--YRRHAPHLL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 152 SGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHYqrMLNYITPDFVHVFAKGKIL 230
Cdd:PRK13633 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKElNKKYGITIILITHY--MEEAVEADRIIVMDSGKVV 223
|
250
....*....|....
gi 446058202 231 KTGT-RELALELEE 243
Cdd:PRK13633 224 MEGTpKEIFKEVEM 237
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
23-236 |
3.29e-17 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 77.93 E-value: 3.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPkyqvLSGDILFEGKSILNLPTDE----RARLGIflCFQYP 96
Cdd:cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGllRP----DSGEVLIDGEDISGLSEAElyrlRRRMGM--LFQSG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 ---TSIpgvtignflkTIVKSVrgkELPVKEFRKelkesmaaldMPESFIARYVNDGF----------------SGGEKK 157
Cdd:cd03261 87 alfDSL----------TVFENV---AFPLREHTR----------LSEEEIREIVLEKLeavglrgaedlypaelSGGMKK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 158 RNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHyqrMLN--YITPDFVHVFAKGKILKTGT 234
Cdd:cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSlKKELGLTSIMVTH---DLDtaFAIADRIAVLYDGKIVAEGT 220
|
..
gi 446058202 235 RE 236
Cdd:cd03261 221 PE 222
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
26-96 |
4.59e-17 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 75.93 E-value: 4.59e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYP 96
Cdd:cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLS 84
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-236 |
4.80e-17 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 77.71 E-value: 4.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIqtGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILN 78
Cdd:COG1127 2 SEPMIEVRNLTKSF--GD----RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGllRPD----SGEILVDGQDITG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 79 LPTDE----RARLGiFLcFQYP---TSIpgvtignflkTIVKSVrgkELPVKEFRkelkesmaalDMPESFIARYVN--- 148
Cdd:COG1127 72 LSEKElyelRRRIG-ML-FQGGalfDSL----------TVFENV---AFPLREHT----------DLSEAEIRELVLekl 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 149 -----DGF--------SGGEKKRneilqMSL-----LKPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHy 209
Cdd:COG1127 127 elvglPGAadkmpselSGGMRKR-----VALaralaLDPEILLYDEPTAGLDPITSAVIDELIRElRDELGLTSVVVTH- 200
|
250 260
....*....|....*....|....*....
gi 446058202 210 qrMLNYI--TPDFVHVFAKGKILKTGTRE 236
Cdd:COG1127 201 --DLDSAfaIADRVAVLADGKIIAEGTPE 227
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
26-236 |
1.09e-16 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 76.95 E-value: 1.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGVT-I 104
Cdd:PRK11300 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--YKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTvI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 GNFLKTIVKSVRGKELP----VKEFRKELKESM--AALDMPESFIARYVN---DGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:PRK11300 99 ENLLVAQHQQLKTGLFSgllkTPAFRRAESEALdrAATWLERVGLLEHANrqaGNLAYGQQRRLEIARCMVTQPEILMLD 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446058202 176 ETDSGLD----------IDALRiVSEGInrnktperSILLITHYQRMLNYITpDFVHVFAKGKILKTGTRE 236
Cdd:PRK11300 179 EPAAGLNpketkeldelIAELR-NEHNV--------TVLLIEHDMKLVMGIS-DRIYVVNQGTPLANGTPE 239
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
6-236 |
1.18e-16 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 77.82 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 6 KIQNLKAgiqtgdsgeikeiVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSILNLPTDER- 84
Cdd:PRK15079 30 PPKTLKA-------------VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDLLGMKDDEWr 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 -ARLGIFLCFQYP-TSI-PGVTIGNFLKTIVKSVRgKELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEI 161
Cdd:PRK15079 95 aVRSDIQMIFQDPlASLnPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE-FSGGQCQRIGI 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 162 LQMSLLKPKLSVLDETDSGLDIDalrIVSEGINRNKTPER----SILLITHYQRMLNYITpDFVHVFAKGKILKTGTRE 236
Cdd:PRK15079 173 ARALILEPKLIICDEPVSALDVS---IQAQVVNLLQQLQRemglSLIFIAHDLAVVKHIS-DRVLVMYLGHAVELGTYD 247
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
24-208 |
1.20e-16 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 75.54 E-value: 1.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKsilnlPTD------ERARLGIFLCFQYP- 96
Cdd:TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGE-----PLDysrkglLERRQRVGLVFQDPd 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIPGVTIGnflKTIVKSVRGKELPVKEFRKELKESMAALDMpeSFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:TIGR01166 79 DQLFAADVD---QDVAFGPLNLGLSEAEVERRVREALTAVGA--SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153
|
170 180 190
....*....|....*....|....*....|..
gi 446058202 177 TDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
23-208 |
1.57e-16 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 75.65 E-value: 1.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYQvlsGDILFEGKSilnlPTDERARLGiFL--CFQYPTSI 99
Cdd:cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGlLKPTS---GSIRVFGKP----LEKERKRIG-YVpqRRSIDRDF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PgVTIGNFLKT-IVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVnDGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:cd03235 84 P-ISVRDVVLMgLYGHKGLFRRLSKADKAKVDEALERVGL-SELADRQI-GELSGGQQQRVLLARALVQDPDLLLLDEPF 160
|
170 180 190
....*....|....*....|....*....|
gi 446058202 179 SGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:cd03235 161 AGVDPKTQEDIYELLRELRREGMTILVVTH 190
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
29-234 |
2.01e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 76.33 E-value: 2.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSIL--NLpTDERARLGIflCFQYPTSipgvtigN 106
Cdd:PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAITddNF-EKLRKHIGI--VFQNPDN-------Q 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 107 FLKTIVK-----SVRGKELPVKEFRKELKESMAALDMPESfiARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGL 181
Cdd:PRK13648 96 FVGSIVKydvafGLENHAVPYDEMHRRVSEALKQVDMLER--ADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446058202 182 DIDALRIVSEGINR-NKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT 234
Cdd:PRK13648 174 DPDARQNLLDLVRKvKSEHNITIISITH--DLSEAMEADHVIVMNKGTVYKEGT 225
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
20-234 |
3.39e-16 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 75.93 E-value: 3.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPT--DERARLGIFlcFQYPT 97
Cdd:TIGR04520 12 ESEKPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPT--SGKVTVDGLDTLDEENlwEIRKKVGMV--FQNPD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 98 SipgvtigNFLKTIVKS--VRGKE---LPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLS 172
Cdd:TIGR04520 88 N-------QFVGATVEDdvAFGLEnlgVPREEMRKRVDEALKLVGM-EDFRDREPHL-LSGGQKQRVAIAGVLAMRPDII 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 173 VLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHYqrMLNYITPDFVHVFAKGKILKTGT 234
Cdd:TIGR04520 159 ILDEATSMLDPKGRKEVLETIRKlNKEEGITVISITHD--MEEAVLADRVIVMNKGKIVAEGT 219
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
29-233 |
6.11e-16 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 74.25 E-value: 6.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 29 VDLTIrPGEVHAIMGPNGSGKSTLSNVIMGHPK----YQVLSGDILFEGKSILNLPTDERarlGIFLCFQYPTSIPGVTI 104
Cdd:cd03297 17 IDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKpdggTIVLNGTVLFDSRKKINLPPQQR---KIGLVFQQYALFPHLNV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 gnfLKTIVKSVRGKELPVKEFRKElkESMAALDMpESFIARYVnDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDiD 184
Cdd:cd03297 93 ---RENLAFGLKRKRNREDRISVD--ELLDLLGL-DHLLNRYP-AQLSGGEKQRVALARALAAQPELLLLDEPFSALD-R 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446058202 185 ALR--IVSEGINRNKTPERSILLITHYQRMLNYITPDFVhVFAKGKILKTG 233
Cdd:cd03297 165 ALRlqLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIV-VMEDGRLQYIG 214
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
23-232 |
9.37e-16 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 74.46 E-value: 9.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNL-PTDERA-RLGIFLCFQ-YPTSI 99
Cdd:TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLdRKQRRAfRRDVQLVFQdSPSAV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 -PGVTIGNFLKTIVKSVrgkeLPVKEFRKELK--ESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:TIGR02769 102 nPRMTVRQIIGEPLRHL----TSLDESEQKARiaELLDMVGLRSEDADKLPRQ-LSGGQLQRINIARALAVKPKLIVLDE 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 177 TDSGLDI----DALRIVSEGINRNKTperSILLITHYQRMLNYITpDFVHVFAKGKILKT 232
Cdd:TIGR02769 177 AVSNLDMvlqaVILELLRKLQQAFGT---AYLFITHDLRLVQSFC-QRVAVMDKGQIVEE 232
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-182 |
1.11e-15 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 75.88 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 2 TEILKIQNL------KAGIQTGDSGEIKeIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqvL---SGDILFE 72
Cdd:COG4172 273 PPLLEARDLkvwfpiKRGLFRRTVGHVK-AVDGVSLTLRRGETLGLVGESGSGKSTLGLALLR------LipsEGEIRFD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 73 GKSILNLPTDE----RARLGIFlcFQYPTSI--PGVTIGnflkTIVK---SVRGKELPVKEFRKELKESMAALDMPESFI 143
Cdd:COG4172 346 GQDLDGLSRRAlrplRRRMQVV--FQDPFGSlsPRMTVG----QIIAeglRVHGPGLSAAERRARVAEALEEVGLDPAAR 419
|
170 180 190
....*....|....*....|....*....|....*....
gi 446058202 144 ARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:COG4172 420 HRYPHE-FSGGQRQRIAIARALILEPKLLVLDEPTSALD 457
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-208 |
1.44e-15 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 74.76 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDsGEIKEiVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYQVLSGDILFEGKSILNL 79
Cdd:PRK09473 9 ADALLDVKDLRVTFSTPD-GDVTA-VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGlLAANGRIGGSATFNGREILNL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 80 PTDERARL---GIFLCFQYP-TSI-PGVTIGNFLKTIV---KSVRGKElpvkefrkELKESMAALD---MPESF--IARY 146
Cdd:PRK09473 87 PEKELNKLraeQISMIFQDPmTSLnPYMRVGEQLMEVLmlhKGMSKAE--------AFEESVRMLDavkMPEARkrMKMY 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446058202 147 VNDgFSGGEKKRNEIlQMSLL-KPKLSVLDETDSGLDIDALRIVSEGINRNKTP-ERSILLITH 208
Cdd:PRK09473 159 PHE-FSGGMRQRVMI-AMALLcRPKLLIADEPTTALDVTVQAQIMTLLNELKREfNTAIIMITH 220
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
26-233 |
1.54e-15 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 73.01 E-value: 1.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNL-PTDERARLGIFLcfQYPTSIPG--- 101
Cdd:cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG--LYKPTSGSVLLDGTDIRQLdPADLRRNIGYVP--QDVTLFYGtlr 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 --VTIGNFLKTIVKSVRGKELP-VKEFRKELKESMaALDMPESfiaryvNDGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:cd03245 96 dnITLGAPLADDERILRAAELAgVTDFVNKHPNGL-DLQIGER------GRGLSGGQRQAVALARALLNDPPILLLDEPT 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 179 SGLDIDALRIVSEGInRNKTPERSILLITHYQRMLNYItpDFVHVFAKGKILKTG 233
Cdd:cd03245 169 SAMDMNSEERLKERL-RQLLGDKTLIIITHRPSLLDLV--DRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
3-234 |
1.57e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 74.50 E-value: 1.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAGIQTGDSGEIKEIvKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYQVLS-------GDILFEG 73
Cdd:PRK13631 20 IILRVKNLYCVFDEKQENELVAL-NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGliKSKYGTIQvgdiyigDKKNNHE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 74 KSILNLPTD----ERARLGIFLCFQYPTsipgvtIGNFLKTIVKSVR----GKELPVKEFRKELKESMAALDMPESFIAR 145
Cdd:PRK13631 99 LITNPYSKKiknfKELRRRVSMVFQFPE------YQLFKDTIEKDIMfgpvALGVKKSEAKKLAKFYLNKMGLDDSYLER 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 146 YVNdGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHyqRMLNYI-TPDFVHVF 224
Cdd:PRK13631 173 SPF-GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITH--TMEHVLeVADEVIVM 249
|
250
....*....|
gi 446058202 225 AKGKILKTGT 234
Cdd:PRK13631 250 DKGKILKTGT 259
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
5-236 |
1.86e-15 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 73.14 E-value: 1.86e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAgiqtgDSGEIKeiVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDER 84
Cdd:cd03299 1 LKVENLSK-----DWKEFK--LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--IKPDSGKILLNGKDITNLPPEKR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 arlGIFLCFQYPTSIPGVTIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQM 164
Cdd:cd03299 72 ---DISYVPQNYALFPHMTV---YKNIAYGLKKRKVDKKEIERKVLEIAEMLGI-DHLLNRKPET-LSGGEQQRVAIARA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 165 SLLKPKLSVLDETDSGLDI----DALRIVSEGINRNKTPersILLITHYQ---RMLNyitpDFVHVFAKGKILKTGTRE 236
Cdd:cd03299 144 LVVNPKILLLDEPFSALDVrtkeKLREELKKIRKEFGVT---VLHVTHDFeeaWALA----DKVAIMLNGKLIQVGKPE 215
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
23-86 |
1.92e-15 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 73.61 E-value: 1.92e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERAR 86
Cdd:COG4559 14 RTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLTGelTPS----SGEVRLNGRPLAAWSPWELAR 75
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
23-245 |
4.58e-15 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 72.26 E-value: 4.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDE-RARLGIflcfqyptsIPG 101
Cdd:cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--YDVSSGSILIDGQDIREVTLDSlRRAIGV---------VPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 VTIgNFLKTIVKSVR-GKELPVKEfrkELKESMAALDMPESFIAryVNDGF-----------SGGEKKRNEILQMSLLKP 169
Cdd:cd03253 83 DTV-LFNDTIGYNIRyGRPDATDE---EVIEAAKAAQIHDKIMR--FPDGYdtivgerglklSGGEKQRVAIARAILKNP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 170 KLSVLDETDSGLDIDALRIVSEGINRNKTpERSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRElalELEEKG 245
Cdd:cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAH--RLSTIVNADKIIVLKDGRIVERGTHE---ELLAKG 226
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
24-246 |
5.39e-15 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 71.80 E-value: 5.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSI--LNLPtDERARLGIFLcfQYPTSipg 101
Cdd:cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--YDPTSGEILLDGVDIrdLNLR-WLRSQIGLVS--QEPVL--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 vtignFLKTIVKSVR-GKELPVKEFRKELKESMAALDMPESFIARY---VNDG---FSGGEKKRNEILQMSLLKPKLSVL 174
Cdd:cd03249 89 -----FDGTIAENIRyGKPDATDEEVEEAAKKANIHDFIMSLPDGYdtlVGERgsqLSGGQKQRIAIARALLRNPKILLL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 175 DETDSGLDIDALRIVSEGINRNKTpERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT-RELaleLEEKGY 246
Cdd:cd03249 164 DEATSALDAESEKLVQEALDRAMK-GRTTIVIAH--RLSTIRNADLIAVLQNGQVVEQGThDEL---MAQKGV 230
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
19-243 |
6.34e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 72.33 E-value: 6.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 19 SGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSI--LNLpTDERARLGIFlcFQYP 96
Cdd:PRK13632 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ--SGEIKIDGITIskENL-KEIRKKIGII--FQNP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TS-IPGVTIGNflkTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:PRK13632 93 DNqFIGATVED---DIAFGLENKKVPPKKMKDIIDDLAKKVGM-EDYLDKEPQN-LSGGQKQRVAIASVLALNPEIIIFD 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 176 ETDSGLDIDALRIVSEGINR-NKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRELALELEE 243
Cdd:PRK13632 168 ESTSMLDPKGKREIKKIMVDlRKTRKKTLISITH--DMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
26-244 |
7.35e-15 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 72.42 E-value: 7.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVL---SGDILFEGKSILNLPTDERARLGIflCFQYPTSIPGV 102
Cdd:TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT-----LLrptSGTARVAGYDVVREPRKVRRSIGI--VPQYASVDEDL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNFLKTIVksvRGKELPVKEFRKELKESMAALDMPEsFIARYVNdGFSGGEKKRNEIlQMSLL-KPKLSVLDETDSGL 181
Cdd:TIGR01188 82 TGRENLEMMG---RLYGLPKDEAEERAEELLELFELGE-AADRPVG-TYSGGMRRRLDI-AASLIhQPDVLFLDEPTTGL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 182 DIDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGTRElalELEEK 244
Cdd:TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLC-DRIAIIDHGRIIAEGTPE---ELKRR 214
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
20-241 |
1.11e-14 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 71.10 E-value: 1.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDE-RARLGIFLcfQYPTS 98
Cdd:cd03254 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDISRKSlRSMIGVVL--QDTFL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 IPGvtignflkTIVKSVR-GKELPVKEFRKELKESMAALDmpesFIAR-------YVNDG---FSGGEKKRNEILQMSLL 167
Cdd:cd03254 89 FSG--------TIMENIRlGRPNATDEEVIEAAKEAGAHD----FIMKlpngydtVLGENggnLSQGERQLLAIARAMLR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446058202 168 KPKLSVLDETDSGLDIDALRIVSEGInRNKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRELALEL 241
Cdd:cd03254 157 DPKILILDEATSNIDTETEKLIQEAL-EKLMKGRTSIIIAH--RLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-182 |
1.76e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 70.89 E-value: 1.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTGDSGEiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDE 83
Cdd:COG1101 1 MLELKNLSKTFNPGTVNE-KRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNAIAG--SLPPDSGSILIDGKDVTKLPEYK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLgIFLCFQYP---TSiPGVTIG-NFLktiVKSVRGKELPV-----KEFRKELKESMAALDMpesfiaryvndGF--- 151
Cdd:COG1101 78 RAKY-IGRVFQDPmmgTA-PSMTIEeNLA---LAYRRGKRRGLrrgltKKRRELFRELLATLGL-----------GLenr 141
|
170 180 190
....*....|....*....|....*....|....*....
gi 446058202 152 --------SGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:COG1101 142 ldtkvgllSGGQRQALSLLMATLTKPKLLLLDEHTAALD 180
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
23-236 |
2.00e-14 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 70.44 E-value: 2.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERARLGI-FLCfQYPtSI 99
Cdd:COG1137 16 RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGlvKPD----SGRIFLDGEDITHLPMHKRARLGIgYLP-QEA-SI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 -PGVTIGNFLKTIVKSVrgkELPVKEFRKELKESMAALDMpeSFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:COG1137 90 fRKLTVEDNILAVLELR---KLSKKEREERLEELLEEFGI--THLRKSKAYSLSGGERRRVEIARALATNPKFILLDEPF 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 179 SGLD----IDALRIVSEGINRNktpersI-LLIT--HYQRMLNyITpDFVHVFAKGKILKTGTRE 236
Cdd:COG1137 165 AGVDpiavADIQKIIRHLKERG------IgVLITdhNVRETLG-IC-DRAYIISEGKVLAEGTPE 221
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
24-234 |
2.00e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 70.88 E-value: 2.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLS---NVIMGHPKYQVL--SGDILFEGKSILNLptdeRARLGIflCFQYPTS 98
Cdd:PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFlhfNGILKPTSGEVLikGEPIKYDKKSLLEV----RKTVGI--VFQNPDD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 ipgvtiGNFLKTIVKSVR----GKELPVKEFRKELKESMAALDMpESFiARYVNDGFSGGEKKRNEILQMSLLKPKLSVL 174
Cdd:PRK13639 90 ------QLFAPTVEEDVAfgplNLGLSKEEVEKRVKEALKAVGM-EGF-ENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446058202 175 DETDSGLD-IDALRIVSEGINRNKtpERSILLITHYQRMLNYITPDFVHVFAKGKILKTGT 234
Cdd:PRK13639 162 DEPTSGLDpMGASQIMKLLYDLNK--EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
3-241 |
2.75e-14 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 71.76 E-value: 2.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAGIQTGDSGEIKEiVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HP---KYQVLSGDilfEGKSIL 77
Cdd:TIGR03269 278 PIIKVRNVSKRYISVDRGVVKA-VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGvlEPtsgEVNVRVGD---EWVDMT 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 78 NLPTDERAR----LGIFlcFQYPTSIPGVTI-GNFLKTIvksvrGKELPvKEFRKE-----LKESMAALDMPESFIARYv 147
Cdd:TIGR03269 354 KPGPDGRGRakryIGIL--HQEYDLYPHRTVlDNLTEAI-----GLELP-DELARMkavitLKMVGFDEEKAEEILDKY- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 148 NDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGI-NRNKTPERSILLITHYQRMLNYITpDFVHVFAK 226
Cdd:TIGR03269 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIlKAREEMEQTFIIVSHDMDFVLDVC-DRAALMRD 503
|
250
....*....|....*
gi 446058202 227 GKILKTGTRELALEL 241
Cdd:TIGR03269 504 GKIVKIGDPEEIVEE 518
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
23-233 |
3.04e-14 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 69.17 E-value: 3.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLpTDERARLGIFLcfQYPTSIP 100
Cdd:cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGliKPD----SGEITFDGKSYQKN-IEALRRIGALI--EAPGFYP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 101 GVTIGNFLKTIVKSVRGKElpvkefrkelKESMAALDM-PESFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:cd03268 86 NLTARENLRLLARLLGIRK----------KRIDEVLDVvGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 180 GLDIDALRIVSEGINRNKTPERSILLITHyqrMLNYI--TPDFVHVFAKGKILKTG 233
Cdd:cd03268 156 GLDPDGIKELRELILSLRDQGITVLISSH---LLSEIqkVADRIGIINKGKLIEEG 208
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
21-234 |
3.79e-14 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 70.90 E-value: 3.79e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 21 EIKEIVK---------GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERarlGIFL 91
Cdd:PRK11432 8 VLKNITKrfgsntvidNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGEDVTHRSIQQR---DICM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 92 CFQYPTSIPGVTIGNflkTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVnDGFSGGEKKRNEILQMSLLKPKL 171
Cdd:PRK11432 83 VFQSYALFPHMSLGE---NVGYGLKMLGVPKEERKQRVKEALELVDL-AGFEDRYV-DQISGGQQQRVALARALILKPKV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 172 SVLDETDSGLDIDALRIVSEGInRNKTPERSI--LLITHYQRMLnYITPDFVHVFAKGKILKTGT 234
Cdd:PRK11432 158 LLFDEPLSNLDANLRRSMREKI-RELQQQFNItsLYVTHDQSEA-FAVSDTVIVMNKGKIMQIGS 220
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
26-234 |
3.92e-14 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 71.53 E-value: 3.92e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVImgHPKYQVLSGDILFEGKSILNLpTDERARLGIFLCFQYPtsipgvtiG 105
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTV-TRASLRRNIAVVFQDA--------G 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 NFLKTIVKSVR-GKELPVKEFRKELKESMAALDmpesFIARYvNDGF-----------SGGEKKRNEILQMSLLKPKLSV 173
Cdd:PRK13657 420 LFNRSIEDNIRvGRPDATDEEMRAAAERAQAHD----FIERK-PDGYdtvvgergrqlSGGERQRLAIARALLKDPPILI 494
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 174 LDETDSGLDI-------DALRIVSEGinrnktpeRSILLITHyqRMLNYITPDFVHVFAKGKILKTGT 234
Cdd:PRK13657 495 LDEATSALDVeteakvkAALDELMKG--------RTTFIIAH--RLSTVRNADRILVFDNGRVVESGS 552
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
24-237 |
5.11e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 69.49 E-value: 5.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTL----SNVIMGHPKYQVlSGDILFEGKSILNL---PTDERARLGifLCFQYP 96
Cdd:PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLlrtfNRLLELNEEARV-EGEVRLFGRNIYSPdvdPIEVRREVG--MVFQYP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIP------GVTIGNFLKTIVKSvrGKELPvKEFRKELKESmAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPK 170
Cdd:PRK14267 95 NPFPhltiydNVAIGVKLNGLVKS--KKELD-ERVEWALKKA-ALWDEVKDRLNDYPSN-LSGGQRQRLVIARALAMKPK 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 171 LSVLDETDSGLDIDALRIVSEGINRNKTpERSILLITHYQRMLNYITpDFVHVFAKGKILKTG-TREL 237
Cdd:PRK14267 170 ILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVS-DYVAFLYLGKLIEVGpTRKV 235
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
9-230 |
5.39e-14 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 68.35 E-value: 5.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 9 NLKAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSIlnlpTDERARLG 88
Cdd:cd03213 8 NLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL----DKRSFRKI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 89 IFLCFQYPTSIPGVTIGNFLktivksvrgkelpvkEFRKELKesmaaldmpesfiaryvndGFSGGEKKRNEI-LQMsLL 167
Cdd:cd03213 84 IGYVPQDDILHPTLTVRETL---------------MFAAKLR-------------------GLSGGERKRVSIaLEL-VS 128
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 168 KPKLSVLDETDSGLD-------IDALRIVSEGinrnktpERSILLITHYQRMLNYITPDFVHVFAKGKIL 230
Cdd:cd03213 129 NPSLLFLDEPTSGLDsssalqvMSLLRRLADT-------GRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
25-94 |
6.14e-14 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 70.13 E-value: 6.14e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERarlGIFLCFQ 94
Cdd:COG3842 20 ALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGF--ETPDSGRILLDGRDVTGLPPEKR---NVGMVFQ 84
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
24-208 |
9.05e-14 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 70.47 E-value: 9.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPkyqvLSGDILFEGKSILNLPTDERARLgIFLCFQYPtSIPG 101
Cdd:TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGllDP----LQGEVTLDGVPVSSLDQDEVRRR-VSVCAQDA-HLFD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 VTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALdmPESFIARYVNDG--FSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:TIGR02868 423 TTVRENLRLARPDATDEELWAALERVGLADWLRAL--PDGLDTVLGEGGarLSGGERQRLALARALLADAPILLLDEPTE 500
|
170 180
....*....|....*....|....*....
gi 446058202 180 GLDIDALRIVSEGInRNKTPERSILLITH 208
Cdd:TIGR02868 501 HLDAETADELLEDL-LAALSGRTVVLITH 528
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
23-245 |
1.11e-13 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 70.19 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDE-RARLGI-----FLcfqYP 96
Cdd:COG1132 353 RPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRF--YDPTSGRILIDGVDIRDLTLESlRRQIGVvpqdtFL---FS 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSI--------PGVTignflktivksvrgkelpvkefRKELKE--SMAALDmpeSFIAR-------YVNDG---FSGGEK 156
Cdd:COG1132 428 GTIrenirygrPDAT----------------------DEEVEEaaKAAQAH---EFIEAlpdgydtVVGERgvnLSGGQR 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 157 KRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNkTPERSILLITH----YQRMlnyitpDFVHVFAKGKILKT 232
Cdd:COG1132 483 QRIAIARALLKDPPILILDEATSALDTETEALIQEALERL-MKGRTTIVIAHrlstIRNA------DRILVLDDGRIVEQ 555
|
250
....*....|...
gi 446058202 233 GTRElalELEEKG 245
Cdd:COG1132 556 GTHE---ELLARG 565
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
24-182 |
1.20e-13 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 68.20 E-value: 1.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVImgHPKYQVLSGDILFEGKSILNLPTDERA-RLGIFLCFQ----YP-- 96
Cdd:PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI--NKLEEITSGDLIVDGLKVNDPKVDERLiRQEAGMVFQqfylFPhl 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIPGVTIGNflktivKSVRGkeLPVKEFRKELKESMAALDMPESfiARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:PRK09493 93 TALENVMFGP------LRVRG--ASKEEAEKQARELLAKVGLAER--AHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
|
....*.
gi 446058202 177 TDSGLD 182
Cdd:PRK09493 163 PTSALD 168
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
16-239 |
1.41e-13 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 69.91 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 16 TGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSilnlPTDERARLGIFLCfQY 95
Cdd:PLN03211 74 ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRK----PTKQILKRTGFVT-QD 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 96 PTSIPGVTIGNFLkTIVKSVRgkeLPvKEFRKELKESMAALDMPESFIARYVND--------GFSGGEKKRNEILQMSLL 167
Cdd:PLN03211 149 DILYPHLTVRETL-VFCSLLR---LP-KSLTKQEKILVAESVISELGLTKCENTiignsfirGISGGERKRVSIAHEMLI 223
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 168 KPKLSVLDETDSGLD-IDALRIVSEGI---NRNKTPERSIllitHYQRMLNYITPDFVHVFAKGKILKTGTRELAL 239
Cdd:PLN03211 224 NPSLLILDEPTSGLDaTAAYRLVLTLGslaQKGKTIVTSM----HQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
23-182 |
2.05e-13 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 67.17 E-value: 2.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTD---ERARLGifLCFQYPTSI 99
Cdd:cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDGLKLTDDKKNineLRQKVG--MVFQQFNLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PGVTI-GNFLKTIVKsVRGKelPVKEFRKELKESMAALDMPESfiARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:cd03262 89 PHLTVlENITLAPIK-VKGM--SKAEAEERALELLEKVGLADK--ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163
|
....
gi 446058202 179 SGLD 182
Cdd:cd03262 164 SALD 167
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
24-246 |
2.31e-13 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 69.36 E-value: 2.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVImghPK-YQVLSGDILFEGKSILNLPTDErARLGIFLCFQYptsipgV 102
Cdd:TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLI---PRfYEPDSGQILLDGHDLADYTLAS-LRRQVALVSQD------V 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIgnFLKTIVKSV---RGKELPVKEFRKELkESMAALD----MPESFIARYVNDG--FSGGEKKRNEILQmSLLK--PKL 171
Cdd:TIGR02203 416 VL--FNDTIANNIaygRTEQADRAEIERAL-AAAYAQDfvdkLPLGLDTPIGENGvlLSGGQRQRLAIAR-ALLKdaPIL 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 172 sVLDETDSGLDIDALRIVSEGINRnKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT-RELaleLEEKGY 246
Cdd:TIGR02203 492 -ILDEATSALDNESERLVQAALER-LMQGRTTLVIAH--RLSTIEKADRIVVMDDGRIVERGThNEL---LARNGL 560
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
25-229 |
2.33e-13 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 67.11 E-value: 2.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSIlNLPTDERARLGIFLCFQYPTSIPGVTI 104
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--YQPQGGQVLLDGKPI-SQYEHKYLHSKVSLVGQEPVLFARSLQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 GNflktIVKSVRGKELpvkEFRKELKESMAALDMPESFIARYVNDG------FSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:cd03248 106 DN----IAYGLQSCSF---ECVKEAAQKAHAHSFISELASGYDTEVgekgsqLSGGQKQRVAIARALIRNPQVLILDEAT 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446058202 179 SGLDIDALRIVSEGINRNKTpERSILLITHyqRMLNYITPDFVHVFAKGKI 229
Cdd:cd03248 179 SALDAESEQQVQQALYDWPE-RRTVLVIAH--RLSTVERADQILVLDGGRI 226
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
26-233 |
2.53e-13 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 67.01 E-value: 2.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERARLGIFlcfqyptsiPGVTig 105
Cdd:cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG--LLEPDAGFATVDGFDVVKEPAEARRRLGFV---------SDST-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 nflkTIVKSVRGKE----------LPVKEFRKELKESMAALDMPEsFIARYVnDGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:cd03266 88 ----GLYDRLTAREnleyfaglygLKGDELTARLEELADRLGMEE-LLDRRV-GGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 176 ETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTG 233
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLC-DRVVVLHRGRVVYEG 218
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-208 |
5.56e-13 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 68.19 E-value: 5.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 2 TEILKIQNLKAGIQTGdsGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG---HPKYQVLSGDILFEGKSILN 78
Cdd:PRK15134 3 QPLLAIENLSVAFRQQ--QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRllpSPPVVYPSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 79 lpTDERARLG-----IFLCFQYPTsipgVTIgNFLKTIVKSV-------RGkelpvkeFRKELK--ESMAALDmpESFI- 143
Cdd:PRK15134 81 --ASEQTLRGvrgnkIAMIFQEPM----VSL-NPLHTLEKQLyevlslhRG-------MRREAArgEILNCLD--RVGIr 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 144 --ARYVND---GFSGGEKKRNEIlQMSLL-KPKLSVLDETDSGLDI-------DALRIVSEGINrnktpeRSILLITH 208
Cdd:PRK15134 145 qaAKRLTDyphQLSGGERQRVMI-AMALLtRPELLIADEPTTALDVsvqaqilQLLRELQQELN------MGLLFITH 215
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
30-84 |
9.69e-13 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 65.55 E-value: 9.69e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 30 DLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDER 84
Cdd:COG3840 19 DLTIAAGERVAILGPSGAGKSTLLNLIAGflPPD----SGRILWNGQDLTALPPAER 71
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
24-236 |
1.14e-12 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 65.59 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSI-LNLPTDERARLGIFLcfQYPTSIPGV 102
Cdd:cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGHDLaLADPAWLRRQVGVVL--QENVLFNRS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNFlktivksVRGKELPVKEfRKELKESMAA-----LDMPESF--IARYVNDGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:cd03252 92 IRDNI-------ALADPGMSME-RVIEAAKLAGahdfiSELPEGYdtIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446058202 176 ETDSGLDIDALRIVSEGInRNKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRE 236
Cdd:cd03252 164 EATSALDYESEHAIMRNM-HDICAGRTVIIIAH--RLSTVKNADRIIVMEKGRIVEQGSHD 221
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
23-209 |
1.64e-12 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 65.05 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGksilNLPTDER----ARLGIFLC--FQ 94
Cdd:cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGllQPT----SGEVRVAG----LVPWKRRkkflRRIGVVFGqkTQ 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 95 YPTSIPGVTIGNFLKTIVKsvrgkeLPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVL 174
Cdd:cd03267 106 LWWDLPVIDSFYLLAAIYD------LPPARFKKRLDELSELLDL-EELLDTPVRQ-LSLGQRMRAEIAAALLHEPEILFL 177
|
170 180 190
....*....|....*....|....*....|....*.
gi 446058202 175 DETDSGLDIDALRIVSEGINR-NKTPERSILLITHY 209
Cdd:cd03267 178 DEPTIGLDVVAQENIRNFLKEyNRERGTTVLLTSHY 213
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
26-208 |
1.84e-12 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 64.79 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPkyQVLSGDILFEGKSILNlPTDERarlgiFLCFQYPTSIPGVTIG 105
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA--QPTSGGVILEGKQITE-PGPDR-----MVVFQNYSLLPWLTVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 NFLKTIVKSVRgKELPVKEFRKELKESMAALDMPESfiARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDE--------T 177
Cdd:TIGR01184 73 ENIALAVDRVL-PDLSKSERRAIVEEHIALVGLTEA--ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEpfgaldalT 149
|
170 180 190
....*....|....*....|....*....|.
gi 446058202 178 DSGLDIDALRIVSEGinrnktpERSILLITH 208
Cdd:TIGR01184 150 RGNLQEELMQIWEEH-------RVTVLMVTH 173
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
2-208 |
2.08e-12 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 66.58 E-value: 2.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 2 TEILKIQNLKAGIQTGDSGEIKEIVKGVdltiRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSILNLPT 81
Cdd:TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGV----RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNIS 2008
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 82 DERARLGifLCFQYpTSIPGVTIGNFLKTIVKSVRGkeLPVKEFRKELKESMAALDMpeSFIARYVNDGFSGGEKKRNEI 161
Cdd:TIGR01257 2009 DVHQNMG--YCPQF-DAIDDLLTGREHLYLYARLRG--VPAEEIEKVANWSIQSLGL--SLYADRLAGTYSGGNKRKLST 2081
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446058202 162 LQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
5-189 |
2.15e-12 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 64.90 E-value: 2.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIQTGdsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqvL----SGDILFEGKSILNLP 80
Cdd:cd03256 1 IEVENLSKTYPNG-----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG------LveptSGSVLIDGTDINKLK 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 81 TDE----RARLGifLCFQYPTSIPGVT-IGNFL------KTIVKSVRGkeLPVKEFRKELKESMAALDMPESFIARyvND 149
Cdd:cd03256 70 GKAlrqlRRQIG--MIFQQFNLIERLSvLENVLsgrlgrRSTWRSLFG--LFPKEEKQRALAALERVGLLDKAYQR--AD 143
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446058202 150 GFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIV 189
Cdd:cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQV 183
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
24-246 |
2.46e-12 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 66.30 E-value: 2.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERARLGIFLCfQYPTSIPGVT 103
Cdd:TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--FQARSGEILLNGFSLKDIDRHTLRQFINYLP-QEPYIFSGSI 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 104 IGNFLKTIVKSVRGKEL----PVKEFRKELKEsmaaldMPESFIARYVNDGF--SGGEKKRNEILQMSLLKPKLSVLDET 177
Cdd:TIGR01193 565 LENLLLGAKENVSQDEIwaacEIAEIKDDIEN------MPLGYQTELSEEGSsiSGGQKQRIALARALLTDSKVLILDES 638
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446058202 178 DSGLD-IDALRIVSEGINRNktpERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT-RELaleLEEKGY 246
Cdd:TIGR01193 639 TSNLDtITEKKIVNNLLNLQ---DKTIIFVAH--RLSVAKQSDKIIVLDHGKIIEQGShDEL---LDRNGF 701
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-234 |
2.72e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 64.68 E-value: 2.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI-----MGHPKYQVlSGDILFEGKSILNLPTDeRARLGIFLCFQYPT 97
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLnrlieIYDSKIKV-DGKVLYFGKDIFQIDAI-KLRKEVGMVFQQPN 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 98 SIPGVTIGNFLKTIVKSVRGKElpVKEFRKELKESMAALDMPESFIARYVNDG--FSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:PRK14246 101 PFPHLSIYDNIAYPLKSHGIKE--KREIKKIVEECLRKVGLWKEVYDRLNSPAsqLSGGQQQRLTIARALALKPKVLLMD 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 176 ETDSGLDIDALRIVSEGINRNKTpERSILLITHYQRMLNYITpDFVHVFAKGKILKTGT 234
Cdd:PRK14246 179 EPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVA-DYVAFLYNGELVEWGS 235
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
24-245 |
3.07e-12 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 66.00 E-value: 3.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDE-RARLGIFlcfqyP------ 96
Cdd:COG5265 372 PILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRF--YDVTSGRILIDGQDIRDVTQASlRAAIGIV-----Pqdtvlf 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 -TSI--------PGVTignflktivksvrgkelpvkefRKELKES--MAALDmpeSFIARyVNDGF-----------SGG 154
Cdd:COG5265 445 nDTIayniaygrPDAS----------------------EEEVEAAarAAQIH---DFIES-LPDGYdtrvgerglklSGG 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 155 EKKRNEILQMSLLKPKLSVLDETDSGLD------I-DALRIVSEGinrnktpeRSILLITHyqRMLNYITPDFVHVFAKG 227
Cdd:COG5265 499 EKQRVAIARTLLKNPPILIFDEATSALDsrteraIqAALREVARG--------RTTLVIAH--RLSTIVDADEILVLEAG 568
|
250
....*....|....*....
gi 446058202 228 KILKTGT-RELaleLEEKG 245
Cdd:COG5265 569 RIVERGThAEL---LAQGG 584
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-87 |
3.41e-12 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 63.99 E-value: 3.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTGDsGEIkEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPT 81
Cdd:COG4181 8 IIELRGLTKTVGTGA-GEL-TILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGldRPT----SGTVRLAGQDLFALDE 81
|
....*.
gi 446058202 82 DERARL 87
Cdd:COG4181 82 DARARL 87
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
23-227 |
3.59e-12 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 63.82 E-value: 3.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDIlfegksilnlptderarlgiflcfqyptSIPGV 102
Cdd:COG2401 43 RYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVAGCV----------------------------DVPDN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNfLKTIVKSVrGKELPVKEFRKELkeSMAALDMPESFIARYvnDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:COG2401 95 QFGR-EASLIDAI-GRKGDFKDAVELL--NAVGLSDAVLWLRRF--KELSTGQKFRFRLALLLAERPKLLVIDEFCSHLD 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446058202 183 IDALRIVSEGINR-NKTPERSILLITHYQRMLNYITPDFVHVFAKG 227
Cdd:COG2401 169 RQTAKRVARNLQKlARRAGITLVVATHHYDVIDDLQPDLLIFVGYG 214
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
24-104 |
3.91e-12 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 65.46 E-value: 3.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVL---SGDILFEGKSILNLPTDERARLGIFLCFQYPTSIP 100
Cdd:PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG-----IVppdSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99
|
....
gi 446058202 101 GVTI 104
Cdd:PRK15439 100 NLSV 103
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-182 |
3.91e-12 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 65.24 E-value: 3.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKagiqtgDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPkyQVLSGDILFEGKSILNLP 80
Cdd:PRK11607 16 LTPLLEIRNLT------KSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE--QPTAGQIMLDGVDLSHVP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 81 TDERArlgIFLCFQYPTSIPGVTIGnflKTIVKSVRGKELPVKEFRKELKESMAALDMPEsFIARYVNDgFSGGEKKRNE 160
Cdd:PRK11607 88 PYQRP---INMMFQSYALFPHMTVE---QNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQ-LSGGQRQRVA 159
|
170 180
....*....|....*....|...
gi 446058202 161 iLQMSLLK-PKLSVLDETDSGLD 182
Cdd:PRK11607 160 -LARSLAKrPKLLLLDEPMGALD 181
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
23-86 |
3.98e-12 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 64.41 E-value: 3.98e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERAR 86
Cdd:PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGelSPD----SGEVRLNGRPLADWSPAELAR 76
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-244 |
4.34e-12 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 64.03 E-value: 4.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTE-ILKIQNLKagIQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MGHPKYQV-LSGDILFEGKSI 76
Cdd:PRK14239 1 MTEpILQVSDLS--VYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSInrMNDLNPEVtITGSIVYNGHNI 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 77 LNLPTDE-RARLGIFLCFQYPTSIPGVTIGNFLKTI-VKSVRGKELPVKEFRKELKESMaaldmpesfIARYVND----- 149
Cdd:PRK14239 75 YSPRTDTvDLRKEIGMVFQQPNPFPMSIYENVVYGLrLKGIKDKQVLDEAVEKSLKGAS---------IWDEVKDrlhds 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 150 --GFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD-IDALRIvsEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAK 226
Cdd:PRK14239 146 alGLSGGQQQRVCIARVLATSPKIILLDEPTSALDpISAGKI--EETLLGLKDDYTMLLVTRSMQQASRIS-DRTGFFLD 222
|
250
....*....|....*....
gi 446058202 227 GKILKTG-TRELALELEEK 244
Cdd:PRK14239 223 GDLIEYNdTKQMFMNPKHK 241
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
17-234 |
5.66e-12 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 63.37 E-value: 5.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 17 GDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDE----RARLG-IFL 91
Cdd:cd03258 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT--SGSVLVDGTDLTLLSGKElrkaRRRIGmIFQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 92 CFQYPTSipgvtignflKTIVKSVrgkELPVK---EFRKELKESMAAL-------DMPESFIARyvndgFSGGEKKRNEI 161
Cdd:cd03258 90 HFNLLSS----------RTVFENV---ALPLEiagVPKAEIEERVLELlelvgleDKADAYPAQ-----LSGGQKQRVGI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 162 LQMSLLKPKLSVLDETDSGLD-------IDALRivseGINRNKTPerSILLITHYQRMLNYITpDFVHVFAKGKILKTGT 234
Cdd:cd03258 152 ARALANNPKVLLCDEATSALDpettqsiLALLR----DINRELGL--TIVLITHEMEVVKRIC-DRVAVMEKGEVVEEGT 224
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
23-189 |
5.95e-12 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 63.76 E-value: 5.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGV 102
Cdd:PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG--IVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNFLKTIVKsVRgkelpvKEFRKELKESMAALDMPESFIARYVND---GFSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:PRK10895 94 SVYDNLMAVLQ-IR------DDLSAEQREDRANELMEEFHIEHLRDSmgqSLSGGERRRVEIARALAANPKFILLDEPFA 166
|
170
....*....|....
gi 446058202 180 GLD----IDALRIV 189
Cdd:PRK10895 167 GVDpisvIDIKRII 180
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-236 |
6.19e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 63.96 E-value: 6.19e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKST-------LSNVIMGHpKYqvlSGDILFEGKSILNLPTDERARLGIFLCFQY 95
Cdd:PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTflrtlnrMNDKVSGY-RY---SGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 96 PTSIPGVTIGNflktIVKSVRGKEL-PVKEFRKELKESMAALDMPESFIARYVNDGF--SGGEKKRNEILQMSLLKPKLS 172
Cdd:PRK14271 110 PNPFPMSIMDN----VLAGVRAHKLvPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFrlSGGQQQLLCLARTLAVNPEVL 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446058202 173 VLDETDSGLDIDALRIVSEGInRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGTRE 236
Cdd:PRK14271 186 LLDEPTSALDPTTTEKIEEFI-RSLADRLTVIIVTHNLAQAARIS-DRAALFFDGRLVEEGPTE 247
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
13-247 |
9.74e-12 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 64.74 E-value: 9.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 13 GIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYQVLSGDILFEGksilnLPTDE---RARL 87
Cdd:TIGR00956 64 KLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASntDGFHIGVEGVITYDG-----ITPEEikkHYRG 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 88 GIFLCFQYPTSIPGVTIGNFLKTIVK----SVRGKELPVKEFRKELKE-SMAALDMPESFIARYVND---GFSGGEKKRN 159
Cdd:TIGR00956 139 DVVYNAETDVHFPHLTVGETLDFAARcktpQNRPDGVSREEYAKHIADvYMATYGLSHTRNTKVGNDfvrGVSGGERKRV 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 160 EILQMSLLKPKLSVLDETDSGLD-------IDALRIVSEGInrNKTPersilLITHYQRMLN-YITPDFVHVFAKGKILK 231
Cdd:TIGR00956 219 SIAEASLGGAKIQCWDNATRGLDsatalefIRALKTSANIL--DTTP-----LVAIYQCSQDaYELFDKVIVLYEGYQIY 291
|
250
....*....|....*..
gi 446058202 232 TGTRELALELEEK-GYD 247
Cdd:TIGR00956 292 FGPADKAKQYFEKmGFK 308
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
23-228 |
1.00e-11 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 61.82 E-value: 1.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqvL----SGDILFEGKSILNL---PTDERARLGifLCFQY 95
Cdd:cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG------LeepdSGSILIDGEDLTDLedeLPPLRRRIG--MVFQD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 96 PTSIPGVTIGNFLktivksvrgkelpvkefrkelkesmaALdmpesfiaryvndGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:cd03229 85 FALFPHLTVLENI--------------------------AL-------------GLSGGQQQRVALARALAMDPDVLLLD 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446058202 176 ETDSGLDIDALRIVSEGINR-NKTPERSILLITHYQRMLNYITpDFVHVFAKGK 228
Cdd:cd03229 126 EPTSALDPITRREVRALLKSlQAQLGITVVLVTHDLDEAARLA-DRVVVLRDGK 178
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
26-208 |
1.11e-11 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 61.87 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVL---SGDILFE-GKSILNLPtdERARLgiflcfqyPTSIP- 100
Cdd:NF040873 8 LHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAG-----VLrptSGTVRRAgGARVAYVP--QRSEV--------PDSLPl 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 101 ----GVTIGNFLKtivksvRGK-ELPVKEFRKELKESMAALDMpESFIARYVnDGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:NF040873 73 tvrdLVAMGRWAR------RGLwRRLTRDDRAAVDDALERVGL-ADLAGRQL-GELSGGQRQRALLAQGLAQEADLLLLD 144
|
170 180 190
....*....|....*....|....*....|...
gi 446058202 176 ETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:NF040873 145 EPTTGLDAESRERIIALLAEEHARGATVVVVTH 177
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
20-242 |
1.73e-11 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 62.25 E-value: 1.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVImghPK-YQVLSGDILFEGKSILNLP-TDERARLGI-----FLc 92
Cdd:cd03251 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI---PRfYDVDSGRILIDGHDVRDYTlASLRRQIGLvsqdvFL- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 93 fqyptsipgvtignFLKTIVKSVR-GK-ELPVKEFRKELKESMA---ALDMPESFIARYVNDG--FSGGEKKRNEILQMS 165
Cdd:cd03251 88 --------------FNDTVAENIAyGRpGATREEVEEAARAANAhefIMELPEGYDTVIGERGvkLSGGQRQRIAIARAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 166 LLKPKLSVLDETDSGLDIDALRIVSEGINRnKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRELALELE 242
Cdd:cd03251 154 LKDPPILILDEATSALDTESERLVQAALER-LMKNRTTFVIAH--RLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
4-194 |
1.84e-11 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 63.55 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIqtGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDIlfegksilnlptde 83
Cdd:COG0488 315 VLELEGLSKSY--GD----KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAG--ELEPDSGTV-------------- 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 raRLGiflcfqyptsiPGVTIGNF------L---KTIVKSVRgkelpvkEFRKELKEsMAALDMPESF------IARYVN 148
Cdd:COG0488 373 --KLG-----------ETVKIGYFdqhqeeLdpdKTVLDELR-------DGAPGGTE-QEVRGYLGRFlfsgddAFKPVG 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446058202 149 DgFSGGEKKRneiLQMSLL---KPKLSVLDE-T-DsgLDIDALRIVSEGIN 194
Cdd:COG0488 432 V-LSGGEKAR---LALAKLllsPPNVLLLDEpTnH--LDIETLEALEEALD 476
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
26-208 |
1.89e-11 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 63.26 E-value: 1.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERARLGIFLCFQYPTSIPGVTIG 105
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG--IHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 NFL---KTIVKSVRGkeLPV---KEFRKELKESMAALDM---PESFIARyvndgFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:PRK09700 99 ENLyigRHLTKKVCG--VNIidwREMRVRAAMMLLRVGLkvdLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDE 171
|
170 180 190
....*....|....*....|....*....|....*
gi 446058202 177 TDSGL---DIDALRIVsegINRNKTPERSILLITH 208
Cdd:PRK09700 172 PTSSLtnkEVDYLFLI---MNQLRKEGTAIVYISH 203
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
23-209 |
2.01e-11 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 62.93 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVLSGDilfEGK-SILNLPTDERARL---GIFLCFQYPTS 98
Cdd:PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG-----MTSPD---AGKiTVLGVPVPARARLaraRIGVVPQFDNL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 IPGVTIGNFLKTIVKSVRGKELPVKEFRKELKEsMAALdmpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK13536 126 DLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE-FARL---ESKADARVSD-LSGGMKRRLTLARALINDPQLLILDEPT 200
|
170 180 190
....*....|....*....|....*....|.
gi 446058202 179 SGLDIDALRIVSEGINRNKTPERSILLITHY 209
Cdd:PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHF 231
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
26-182 |
2.02e-11 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 61.97 E-value: 2.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERarlGIFLCFQYPTSIPGVT 103
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGleRPD----SGTILFGGEDATDVPVQER---NVGFVFQHYALFRHMT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 104 IGN---F-LKTIVKSVRGKELPVKEFRKELKEsMAALDmpeSFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:cd03296 91 VFDnvaFgLRVKPRSERPPEAEIRAKVHELLK-LVQLD---WLADRYPAQ-LSGGQRQRVALARALAVEPKVLLLDEPFG 165
|
...
gi 446058202 180 GLD 182
Cdd:cd03296 166 ALD 168
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
23-234 |
2.52e-11 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 63.20 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLptDERA-RLGIFLCFQYPTSIPG 101
Cdd:TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--YQPTGGQVLLDGVPLVQY--DHHYlHRQVALVGQEPVLFSG 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 VTIGNFLKTIVKSvrgkelPVKEFRKELKESMAaldmpESFIARYVNDG----------FSGGEKKRNEILQMSLLKPKL 171
Cdd:TIGR00958 570 SVRENIAYGLTDT------PDEEIMAAAKAANA-----HDFIMEFPNGYdtevgekgsqLSGGQKQRIAIARALVRKPRV 638
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 172 SVLDETDSGLDIDALRIVSEGINRNktpERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT 234
Cdd:TIGR00958 639 LILDEATSALDAECEQLLQESRSRA---SRTVLLIAH--RLSTVERADQILVLKKGSVVEMGT 696
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
21-181 |
2.87e-11 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.92 E-value: 2.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 21 EIKEIVK---------GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSILNLPTDERARLGIFL 91
Cdd:TIGR02633 3 EMKGIVKtfggvkaldGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 92 CFQYPTSIPGVTIGN--FLKTIVkSVRGKELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKP 169
Cdd:TIGR02633 83 IHQELTLVPELSVAEniFLGNEI-TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD-YGGGQQQLVEIAKALNKQA 160
|
170
....*....|..
gi 446058202 170 KLSVLDETDSGL 181
Cdd:TIGR02633 161 RLLILDEPSSSL 172
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
23-208 |
2.89e-11 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 61.14 E-value: 2.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSilnLPTDERARLGiflcfqYPTSIPGV 102
Cdd:cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG--IILPDSGEVLFDGKP---LDIAARNRIG------YLPEERGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tignFLKTIVKSV-----RGKELPVKEFRKELKESMAALDmpesfIARYVN---DGFSGGEKKRNEILQMSLLKPKLSVL 174
Cdd:cd03269 82 ----YPKMKVIDQlvylaQLKGLKKEEARRRIDEWLERLE-----LSEYANkrvEELSKGNQQKVQFIAAVIHDPELLIL 152
|
170 180 190
....*....|....*....|....*....|....
gi 446058202 175 DETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
20-236 |
4.15e-11 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 62.37 E-value: 4.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYqvLSGDILFEGKSILNLptdERARLGIFLCFqyptsI 99
Cdd:TIGR01842 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADLKQW---DRETFGKHIGY-----L 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 P-GVTIgnFLKTIVKSV-RGKELPVKEFRKELKESMAALDMPESFIARYVND------GFSGGEKKRNEILQMSLLKPKL 171
Cdd:TIGR01842 398 PqDVEL--FPGTVAENIaRFGENADPEKIIEAAKLAGVHELILRLPDGYDTVigpggaTLSGGQRQRIALARALYGDPKL 475
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 172 SVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNYItpDFVHVFAKGKILKTGTRE 236
Cdd:TIGR01842 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV--DKILVLQDGRIARFGERD 538
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
26-247 |
5.04e-11 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 61.18 E-value: 5.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKsILNLPT--DERARLGIFlcFQYPTSipg 101
Cdd:PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGllLPE----AGTITVGGM-VLSEETvwDVRRQVGMV--FQNPDN--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 vtigNFLKTIVKS--VRGKE---LPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:PRK13635 93 ----QFVGATVQDdvAFGLEnigVPREEMVERVDQALRQVGM-EDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDE 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 177 TDSGLDIDALRIVSEGINRNKTPER-SILLITHyqRMLNYITPDFVHVFAKGKILKTGTRE----LALELEEKGYD 247
Cdd:PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGiTVLSITH--DLDEAAQADRVIVMNKGEILEEGTPEeifkSGHMLQEIGLD 240
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
19-229 |
5.83e-11 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 59.54 E-value: 5.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 19 SGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqvlsgdilfegksiLNLPTDERARLGiflcfqypts 98
Cdd:cd03246 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG------------------LLRPTSGRVRLD---------- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 ipGVTIGNFLktivksvrgkelpvkefRKELKESMAALDMPESFIARYVNDG-FSGGEKKRnEILQMSLLK-PKLSVLDE 176
Cdd:cd03246 63 --GADISQWD-----------------PNELGDHVGYLPQDDELFSGSIAENiLSGGQRQR-LGLARALYGnPRILVLDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446058202 177 TDSGLDIDALRIVSEGINRNKTPERSILLITHYQRMLNyiTPDFVHVFAKGKI 229
Cdd:cd03246 123 PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA--SADRILVLEDGRV 173
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
23-182 |
6.70e-11 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 61.99 E-value: 6.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGH-PKYQVLSGDILFEGKSIlnlptdERARLGIFLCF--QYPTSI 99
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRsPKGVKGSGSVLLNGMPI------DAKEMRAISAYvqQDDLFI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PGVTIGNFLkTIVKSVR-GKELPVKEFR---KELKESMAALDMPESFI-ARYVNDGFSGGEKKR----NEILQmsllKPK 170
Cdd:TIGR00955 112 PTLTVREHL-MFQAHLRmPRRVTKKEKRervDEVLQALGLRKCANTRIgVPGRVKGLSGGERKRlafaSELLT----DPP 186
|
170
....*....|..
gi 446058202 171 LSVLDETDSGLD 182
Cdd:TIGR00955 187 LLFCDEPTSGLD 198
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
21-105 |
9.11e-11 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 61.48 E-value: 9.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 21 EIKEIVK---------GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKSIL--NLPTDERArlGI 89
Cdd:PRK13549 7 EMKNITKtfggvkaldNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQasNIRDTERA--GI 84
|
90
....*....|....*.
gi 446058202 90 FLCFQYPTSIPGVTIG 105
Cdd:PRK13549 85 AIIHQELALVKELSVL 100
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
26-236 |
9.25e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 60.39 E-value: 9.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERARLGIFLCFQYP-TSIPGVTI 104
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPeTQFVGRTV 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 GNFLKTivksvrGKE---LPVKEFRKELKESMAALDMPESfiaRYVN-DGFSGGEKKRNEILQMSLLKPKLSVLDETDSG 180
Cdd:PRK13644 96 EEDLAF------GPEnlcLPPIEIRKRVDRALAEIGLEKY---RHRSpKTLSGGQGQCVALAGILTMEPECLIFDEVTSM 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 181 LDIDALRIVSEGINRNKTPERSILLITHYQRMLNyiTPDFVHVFAKGKILKTGTRE 236
Cdd:PRK13644 167 LDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH--DADRIIVMDRGKIVLEGEPE 220
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
26-208 |
9.41e-11 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 61.53 E-value: 9.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDERaRLGIFLCFQYPTSIPGvtig 105
Cdd:TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF--VDPTEGSIAVNGVPLADADADSW-RDQIAWVPQHPFLFAG---- 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 nflkTIVKSVR-----GKELPVKEF--RKELKESMAALdmPESfIARYVND---GFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:TIGR02857 411 ----TIAENIRlarpdASDAEIREAleRAGLDEFVAAL--PQG-LDTPIGEggaGLSGGQAQRLALARAFLRDAPLLLLD 483
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446058202 176 ETDSGLD-------IDALRIVSEGinrnktpeRSILLITH 208
Cdd:TIGR02857 484 EPTAHLDaeteaevLEALRALAQG--------RTVLLVTH 515
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
23-242 |
1.02e-10 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 60.47 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERA--RLGIFLCFQYPTSI- 99
Cdd:PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNRAQRKafRRDIQMVFQDSISAv 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 -PGVTIGNFLKTIVKSVRGkeLPVKEFRKELKESMAALDMPESfIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK10419 103 nPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDS-VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446058202 179 SGLDI----DALRIVSEGINRNKTperSILLITHYQRMLNYitpdFVH---VFAKGKILKTGTRELALELE 242
Cdd:PRK10419 180 SNLDLvlqaGVIRLLKKLQQQFGT---ACLFITHDLRLVER----FCQrvmVMDNGQIVETQPVGDKLTFS 243
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
20-208 |
1.27e-10 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 59.62 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MGHPKyqvlSGDILFEGKSILNL-PTDERARLGifLCFQYP 96
Cdd:cd03295 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMInrLIEPT----SGEIFIDGEDIREQdPVELRRKIG--YVIQQI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIPGVTIGNFLKTIVKSVRGKElpvKEFRKELKESMAALDM-PESFIARYvNDGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:cd03295 85 GLFPHMTVEENIALVPKLLKWPK---EKIRERADELLALVGLdPAEFADRY-PHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190
....*....|....*....|....*....|....
gi 446058202 176 ETDSGLD-IDALRIVSEGINRNKTPERSILLITH 208
Cdd:cd03295 161 EPFGALDpITRDQLQEEFKRLQQELGKTIVFVTH 194
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
23-182 |
1.45e-10 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 60.35 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPkyQVLSGDILFEGKSILNLPTDERArlgIFLCFQYPTSIPGV 102
Cdd:PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE--TPDSGRIMLDGQDITHVPAENRH---VNTVFQSYALFPHM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIgnfLKTIVKSVRGKELPVKEFRKELKEsmaALDMP--ESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSG 180
Cdd:PRK09452 102 TV---FENVAFGLRMQKTPAAEITPRVME---ALRMVqlEEFAQRKPHQ-LSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
|
..
gi 446058202 181 LD 182
Cdd:PRK09452 175 LD 176
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
5-223 |
1.47e-10 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 57.84 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKagIQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkyqvlsgDILFEGKsilnlptder 84
Cdd:cd03221 1 IELENLS--KTYGG----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--------LEPDEGI---------- 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 85 arlgiflcfqyPTSIPGVTIGNFLKtivksvrgkelpvkefrkelkesmaaldmpesfiaryvndgFSGGEKKRNEILQM 164
Cdd:cd03221 57 -----------VTWGSTVKIGYFEQ-----------------------------------------LSGGEKMRLALAKL 84
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 165 SLLKPKLSVLDETDSGLDIDALRIVSEGInrnKTPERSILLITHYQRMLNYITPDFVHV 223
Cdd:cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEAL---KEYPGTVILVSHDRYFLDQVATKIIEL 140
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
20-233 |
1.67e-10 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 58.48 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKsilnlptderarlgiflcfqyptsi 99
Cdd:cd03247 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG--DLKPQQGEITLDGV------------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 pgvtignflktivksvrgkelPVKEFRKELKESMAALDM-PESF---IARYVNDGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:cd03247 65 ---------------------PVSDLEKALSSLISVLNQrPYLFdttLRNNLGRRFSGGERQRLALARILLQDAPIVLLD 123
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446058202 176 ETDSGLD----IDALRIVSEGInRNKTpersILLITHYQRMLNYItpDFVHVFAKGKILKTG 233
Cdd:cd03247 124 EPTVGLDpiteRQLLSLIFEVL-KDKT----LIWITHHLTGIEHM--DKILFLENGKIIMQG 178
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
4-109 |
1.69e-10 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 60.30 E-value: 1.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTgDSGEIKeIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYQVLSGDILFEGKSILNLPT 81
Cdd:COG4170 3 LLDIRNLTIEIDT-PQGRVK-AVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGitKDNWHVTADRFRWNGIDLLKLSP 80
|
90 100 110
....*....|....*....|....*....|...
gi 446058202 82 DERARL---GIFLCFQYPTSI--PGVTIGNFLK 109
Cdd:COG4170 81 RERRKIigrEIAMIFQEPSSCldPSAKIGDQLI 113
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
3-91 |
2.00e-10 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 58.21 E-value: 2.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAGIQtgdsgeikeiVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTD 82
Cdd:cd03215 3 PVLEVRGLSVKGA----------VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG--LRPPASGEITLDGKPVTRRSPR 70
|
....*....
gi 446058202 83 ERARLGIFL 91
Cdd:cd03215 71 DAIRAGIAY 79
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
22-233 |
2.45e-10 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 58.43 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 22 IKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGH-PKYQVLSGDILFEGKSilNLPTDERARLGIFLCFQYPTSIP 100
Cdd:cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRtEGNVSVEGDIHYNGIP--YKEFAEKYPGEIIYVSEEDVHFP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 101 GVTIGNFLktivksvrgkelpvkEFRKELKESmaaldmpesfiaRYVNdGFSGGEKKRNEILQMSLLKPKLSVLDETDSG 180
Cdd:cd03233 97 TLTVRETL---------------DFALRCKGN------------EFVR-GISGGERKRVSIAEALVSRASVLCWDNSTRG 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 181 LD-IDALRIVSeginrnktperSILLITHYQRMLNYIT-----PDFVHVFAKGKILKTG 233
Cdd:cd03233 149 LDsSTALEILK-----------CIRTMADVLKTTTFVSlyqasDEIYDLFDKVLVLYEG 196
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
5-247 |
3.04e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 59.29 E-value: 3.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIQTGDSGEiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSI----LNLp 80
Cdd:PRK13637 3 IKIENLTHIYMEGTPFE-KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT--SGKIIIDGVDItdkkVKL- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 81 TDERARLGifLCFQYPTSipgvtiGNFLKTIVKSV----RGKELPVKEFRKELKESMAALDMPESFIARYVNDGFSGGEK 156
Cdd:PRK13637 79 SDIRKKVG--LVFQYPEY------QLFEETIEKDIafgpINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 157 KRNEILQMSLLKPKLSVLDETDSGLDIDAL-RIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGT- 234
Cdd:PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRdEILNKIKELHKEYNMTIILVSHSMEDVAKLA-DRIIVMNKGKCELQGTp 229
|
250 260 270
....*....|....*....|....*....|...
gi 446058202 235 RE--------------------LALELEEKGYD 247
Cdd:PRK13637 230 REvfkevetlesiglavpqvtyLVRKLRKKGFN 262
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
4-183 |
3.07e-10 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 58.87 E-value: 3.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTgdsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDE 83
Cdd:PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ--SGTVFLGDKPISMLSSRQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLGIFLCfQYPTSIPGVTIgnflKTIVKSVRGKELPV-----KEFRKELKESMAALDMPEsFIARYVNDgFSGGEKKR 158
Cdd:PRK11231 74 LARRLALLP-QHHLTPEGITV----RELVAYGRSPWLSLwgrlsAEDNARVNQAMEQTRINH-LADRRLTD-LSGGQRQR 146
|
170 180
....*....|....*....|....*.
gi 446058202 159 nEILQMSLLK-PKLSVLDETDSGLDI 183
Cdd:PRK11231 147 -AFLAMVLAQdTPVVLLDEPTTYLDI 171
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
23-86 |
3.31e-10 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 58.56 E-value: 3.31e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERAR 86
Cdd:COG4604 14 KVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPD--SGEVLVDGLDVATTPSRELAK 75
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
23-234 |
3.34e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 59.04 E-value: 3.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG------HPKYQVLSGDILFEGKSILNLptdeRARLGIflCFQYP 96
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlllpddNPNSKITVDGITLTAKTVWDI----REKVGI--VFQNP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 -TSIPGVTIGNflkTIVKSVRGKELPVKEFRKELKESMAALDMPESFIARYVNdgFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:PRK13640 94 dNQFVGATVGD---DVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPAN--LSGGQKQRVAIAGILAVEPKIIILD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 176 ETDSGLDIDA----LRIVSEGINRNktpERSILLITHYQRMLNYitPDFVHVFAKGKILKTGT 234
Cdd:PRK13640 169 ESTSMLDPAGkeqiLKLIRKLKKKN---NLTVISITHDIDEANM--ADQVLVLDDGKLLAQGS 226
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-182 |
3.73e-10 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 59.72 E-value: 3.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNL------KAGIQTGDSGEiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlsGDILFEGKSIL 77
Cdd:PRK15134 275 LLDVEQLqvafpiRKGILKRTVDH-NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ---GEIWFDGQPLH 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 78 N------LPTDERarlgIFLCFQYPTSI--PGVtigNFLKTIVKSVR--GKELPVKEFRKELKESMA--ALDmPESFiAR 145
Cdd:PRK15134 351 NlnrrqlLPVRHR----IQVVFQDPNSSlnPRL---NVLQIIEEGLRvhQPTLSAAQREQQVIAVMEevGLD-PETR-HR 421
|
170 180 190
....*....|....*....|....*....|....*..
gi 446058202 146 YVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:PRK15134 422 YPAE-FSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
19-94 |
3.82e-10 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 59.00 E-value: 3.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 19 SGEIKEIVK---------GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSIL-NLPTDERar 86
Cdd:COG1118 2 SIEVRNISKrfgsftlldDVSLEIASGELVALLGPSGSGKTTLLRIIAGleTPD----SGRIVLNGRDLFtNLPPRER-- 75
|
....*...
gi 446058202 87 lGIFLCFQ 94
Cdd:COG1118 76 -RVGFVFQ 82
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
21-74 |
3.86e-10 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 59.42 E-value: 3.86e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446058202 21 EIKEIVK---------GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPkYQVLSGDILFEGK 74
Cdd:NF040905 3 EMRGITKtfpgvkaldDVNLSVREGEIHALCGENGAGKSTLMKVLSGvYP-HGSYEGEILFDGE 65
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
23-210 |
4.16e-10 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 58.04 E-value: 4.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERarlGIFLCFQYPTSIPGV 102
Cdd:cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG--LEEPTSGRIYIGGRDVTDLPPKDR---DIAMVFQNYALYPHM 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:cd03301 88 TV---YDNIAFGLKLRKVPKDEIDERVREVAELLQI-EHLLDRKPKQ-LSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
170 180 190
....*....|....*....|....*....|
gi 446058202 183 IdALRIV--SEGINRNKTPERSILLITHYQ 210
Cdd:cd03301 163 A-KLRVQmrAELKRLQQRLGTTTIYVTHDQ 191
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
23-214 |
5.74e-10 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 57.75 E-value: 5.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDE----RARLGIflCFQYP 96
Cdd:COG2884 15 REALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGeeRPT----SGQVLVNGQDLSRLKRREipylRRRIGV--VFQDF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIPGVTIGNFLKtIVKSVRGKElpvkefRKELKE-SMAALDMP--ESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSV 173
Cdd:COG2884 89 RLLPDRTVYENVA-LPLRVTGKS------RKEIRRrVREVLDLVglSDKAKALPHE-LSGGEQQRVAIARALVNRPELLL 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446058202 174 LDETDSGLDID-ALRIVS--EGINRNKTperSILLITHYQRMLN 214
Cdd:COG2884 161 ADEPTGNLDPEtSWEIMEllEEINRRGT---TVLIATHDLELVD 201
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
3-89 |
6.76e-10 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 58.88 E-value: 6.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAgiqTGDSGeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSILNLPTD 82
Cdd:COG3845 256 VVLEVENLSV---RDDRG--VPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRP--PASGSIRLDGEDITGLSPR 328
|
....*..
gi 446058202 83 ERARLGI 89
Cdd:COG3845 329 ERRRLGV 335
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
29-247 |
6.81e-10 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 58.11 E-value: 6.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLS---NVIMGHPKYQVLSGD-ILFEGKSILNLpTDERARLGIflCFQYPTSipgvti 104
Cdd:PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLqhlNGLLQPTSGTVTIGErVITAGKKNKKL-KPLRKKVGI--VFQFPEH------ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 GNFLKTIVKSV----RGKELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSG 180
Cdd:PRK13634 97 QLFEETVEKDIcfgpMNFGVSEEDAKQKAREMIELVGLPEELLARSPFE-LSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 181 LDIDALRIVSEGINR-NKTPERSILLITH-YQRMLNYitPDFVHVFAKGKILKTGT-REL---ALELEEKGYD 247
Cdd:PRK13634 176 LDPKGRKEMMEMFYKlHKEKGLTTVLVTHsMEDAARY--ADQIVVMHKGTVFLQGTpREIfadPDELEAIGLD 246
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
29-234 |
7.02e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 58.21 E-value: 7.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLS---NVIMGHPKYQVLSGDILFEGKSILNLPTDERARLGIflCFQYPTSipgvtiG 105
Cdd:PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLqhlNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV--VFQFPES------Q 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 NFLKTIVKSV----RGKELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGL 181
Cdd:PRK13643 97 LFEETVLKDVafgpQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 182 D----IDALRIVsEGINRNKtpeRSILLITH-YQRMLNYitPDFVHVFAKGKILKTGT 234
Cdd:PRK13643 176 DpkarIEMMQLF-ESIHQSG---QTVVLVTHlMDDVADY--ADYVYLLEKGHIISCGT 227
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
23-247 |
7.60e-10 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 58.54 E-value: 7.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDIlfegksilNLPTDER-ARLGiflcfQYPTSIPG 101
Cdd:COG0488 11 RPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAG--ELEPDSGEV--------SIPKGLRiGYLP-----QEPPLDDD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 VTIgnfLKTIVKSVRgkelPVKEFRKELKESMAALDMPESFIARY--------VNDG----------------------- 150
Cdd:COG0488 76 LTV---LDTVLDGDA----ELRALEAELEELEAKLAEPDEDLERLaelqeefeALGGweaearaeeilsglgfpeedldr 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 151 ----FSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDA-------LRivsegiNRNKTpersILLITHYQRMLNYITPD 219
Cdd:COG0488 149 pvseLSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESiewleefLK------NYPGT----VLVVSHDRYFLDRVATR 218
|
250 260 270
....*....|....*....|....*....|....*
gi 446058202 220 FVHV-FAKGKILKTG------TRELALELEEKGYD 247
Cdd:COG0488 219 ILELdRGKLTLYPGNysayleQRAERLEQEAAAYA 253
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-99 |
8.46e-10 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 57.35 E-value: 8.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIqtGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MgH---PKYQVlSGDILFEGKS 75
Cdd:COG1117 8 LEPKIEVRNLNVYY--GD----KQALKDINLDIPENKVTALIGPSGCGKSTLLRCLnrM-NdliPGARV-EGEILLDGED 79
|
90 100 110
....*....|....*....|....*....|.
gi 446058202 76 ILNL---PTDERARLGifLCFQ----YPTSI 99
Cdd:COG1117 80 IYDPdvdVVELRRRVG--MVFQkpnpFPKSI 108
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
24-182 |
1.00e-09 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 57.55 E-value: 1.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEG-------KSILNLptderaRLGIFLCFQYP 96
Cdd:PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGkpidysrKGLMKL------RESVGMVFQDP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSipGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMpeSFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:PRK13636 92 DN--QLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167
|
....*.
gi 446058202 177 TDSGLD 182
Cdd:PRK13636 168 PTAGLD 173
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-209 |
1.16e-09 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 57.51 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAgiQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILN 78
Cdd:PRK13537 4 SVAPIDFRNVEK--RYGD----KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGltHPD----AGSISLCGEPVPS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 79 LPTDERARLGIFLcfQYPTSIPGVTI-------GNFLKTIVKSVRGKELPVKEFRKelKESMAALDMPEsfiaryvndgF 151
Cdd:PRK13537 74 RARHARQRVGVVP--QFDNLDPDFTVrenllvfGRYFGLSAAAARALVPPLLEFAK--LENKADAKVGE----------L 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 152 SGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHY 209
Cdd:PRK13537 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHF 197
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
21-209 |
2.26e-09 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 56.63 E-value: 2.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 21 EIKEIVKGVDLTIRPGEVHAIMGPNGSGKST----LSNVImgHPKyqvlSGDILFEGKSilnlPTDERARlgiflcfqYP 96
Cdd:COG4586 33 REVEAVDDISFTIEPGEIVGFIGPNGAGKSTtikmLTGIL--VPT----SGEVRVLGYV----PFKRRKE--------FA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 97 TSIpGVTIGN---------------FLKTIVksvrgkELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEI 161
Cdd:COG4586 95 RRI-GVVFGQrsqlwwdlpaidsfrLLKAIY------RIPDAEYKKRLDELVELLDL-GELLDTPVRQ-LSLGQRMRCEL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446058202 162 LqMSLL-KPKLSVLDETDSGLDIDALRIVSEGINR-NKTPERSILLITHY 209
Cdd:COG4586 166 A-AALLhRPKILFLDEPTIGLDVVSKEAIREFLKEyNRERGTTILLTSHD 214
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-247 |
2.31e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 56.66 E-value: 2.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIqtgDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSIlnlp 80
Cdd:PRK13650 1 MSNIIEVKNLTFKY---KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE--SGQIIIDGDLL---- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 81 TDERA---RLGIFLCFQYP-TSIPGVTIGNflkTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEK 156
Cdd:PRK13650 72 TEENVwdiRHKIGMVFQNPdNQFVGATVED---DVAFGLENKGIPHEEMKERVNEALELVGM-QDFKEREPAR-LSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 157 KRNEILQMSLLKPKLSVLDETDSGLD----IDALRIVSEGINRNKTperSILLITHyqrMLNYIT-PDFVHVFAKGKILK 231
Cdd:PRK13650 147 QRVAIAGAVAMRPKIIILDEATSMLDpegrLELIKTIKGIRDDYQM---TVISITH---DLDEVAlSDRVLVMKNGQVES 220
|
250 260
....*....|....*....|
gi 446058202 232 TGT-REL---ALELEEKGYD 247
Cdd:PRK13650 221 TSTpRELfsrGNDLLQLGLD 240
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-224 |
2.38e-09 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 56.20 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIQTgdsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MGHPKYQV-LSGDILFEGKSILNLPT 81
Cdd:PRK14258 8 IKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLnrMNELESEVrVEGRVEFFNQNIYERRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 82 D-ERARLGIFLCFQYPTSIP---------GVT-IGNFLKTIVKSVRGKELPVKEFRKELKESM--AALDMpesfiaryvn 148
Cdd:PRK14258 82 NlNRLRRQVSMVHPKPNLFPmsvydnvayGVKiVGWRPKLEIDDIVESALKDADLWDEIKHKIhkSALDL---------- 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 149 dgfSGGEKKRNEILQMSLLKPKLSVLDETDSGLD-IDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVF 224
Cdd:PRK14258 152 ---SGGQQQRLCIARALAVKPKVLLMDEPCFGLDpIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS-DFTAFF 224
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-87 |
2.63e-09 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 57.04 E-value: 2.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNvIMGHPKyQVLSGDILFEGKSILNLP 80
Cdd:PRK10535 1 MTALLELKDIRRSYPSGE--EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCLD-KPTSGTYRVAGQDVATLD 76
|
....*..
gi 446058202 81 TDERARL 87
Cdd:PRK10535 77 ADALAQL 83
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
15-182 |
2.64e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 57.43 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 15 QTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVL-SGDILFEGKsilnlPTDERARLGIFLCF 93
Cdd:TIGR00956 768 EVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVItGGDRLVNGR-----PLDSSFQRSIGYVQ 842
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 94 QYPTSIPGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMpESF---IARYVNDGFSGGEKKRNEILQMSLLKPK 170
Cdd:TIGR00956 843 QQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-ESYadaVVGVPGEGLNVEQRKRLTIGVELVAKPK 921
|
170
....*....|...
gi 446058202 171 LSV-LDETDSGLD 182
Cdd:TIGR00956 922 LLLfLDEPTSGLD 934
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-231 |
3.19e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 56.25 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKagIQTGDSGEIKEIvKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSiLNLP 80
Cdd:PRK13642 1 MNKILEVENLV--FKYEKESDVNQL-NGVSFSITKGEWVSIIGQNGSGKSTTARLIDG--LFEEFEGKVKIDGEL-LTAE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 81 TDERARLGIFLCFQYP-TSIPGVTIGNflkTIVKSVRGKELPVKEFRKELKESMAALDMPEsFIARYVNDgFSGGEKKRN 159
Cdd:PRK13642 75 NVWNLRRKIGMVFQNPdNQFVGATVED---DVAFGMENQGIPREEMIKRVDEALLAVNMLD-FKTREPAR-LSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 160 EILQMSLLKPKLSVLDETDSGLD----IDALRIVSEGINRNKTperSILLITHyqRMLNYITPDFVHVFAKGKILK 231
Cdd:PRK13642 150 AVAGIIALRPEIIILDESTSMLDptgrQEIMRVIHEIKEKYQL---TVLSITH--DLDEAASSDRILVMKAGEIIK 220
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
30-233 |
3.73e-09 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 55.19 E-value: 3.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 30 DLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERArlgIFLCFQYPTSIPGVTIgnflK 109
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRP---VSMLFQENNLFAHLTV----E 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 110 TIVKSVRGKELPVKEFRKELKESMAALDMPESFIARyVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDiDALR-- 187
Cdd:cd03298 89 QNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-LPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD-PALRae 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 446058202 188 ---IVSEGINRNKTperSILLITHYQRMLNYITPDFVHVfAKGKILKTG 233
Cdd:cd03298 167 mldLVLDLHAETKM---TVLMVTHQPEDAKRLAQRVVFL-DNGRIAAQG 211
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
28-234 |
5.13e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 55.52 E-value: 5.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDE-----RARLGifLCFQYPTSipgv 102
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG--LHVPTQGSVRVDDTLITSTSKNKdikqiRKKVG--LVFQFPES---- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tiGNFLKTIVKSVR-GKE---LPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK13649 97 --QLFEETVLKDVAfGPQnfgVSQEEAEALAREKLALVGISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPT 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 179 SGLDIDALRIVSEGINRNKTPERSILLITH-YQRMLNYitPDFVHVFAKGKILKTGT 234
Cdd:PRK13649 174 AGLDPKGRKELMTLFKKLHQSGMTIVLVTHlMDDVANY--ADFVYVLEKGKLVLSGK 228
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
30-234 |
5.67e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 55.40 E-value: 5.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 30 DLTIRPGEVHAIMGPNGSGKST---LSNVIMGHPKYQVLSGDILFEGkSILNLPTDERARLGIFLCFQYPTsipgvtIGN 106
Cdd:PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTmiqLTNGLIISETGQTIVGDYAIPA-NLKKIKEVKRLRKEIGLVFQFPE------YQL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 107 FLKTIVKSVRGKELPV----KEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:PRK13645 104 FQETIEKDIAFGPVNLgenkQEAYKKVPELLKLVQLPEDYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446058202 183 IDALRIVSEGINR-NKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGT 234
Cdd:PRK13645 183 PKGEEDFINLFERlNKEYKKRIIMVTHNMDQVLRIA-DEVIVMHEGKVISIGS 234
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
4-208 |
6.47e-09 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 55.52 E-value: 6.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKagIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKY--QVLSGDILFEGKSILNLPT 81
Cdd:PRK11022 3 LLNVDKLS--VHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYpgRVMAEKLEFNGQDLQRISE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 82 DERARL---GIFLCFQYP-TSI-PGVTIGNFLKTIVKSVRGKElpvkefRKELKE------SMAALDMPESFIARYVNDg 150
Cdd:PRK11022 81 KERRNLvgaEVAMIFQDPmTSLnPCYTVGFQIMEAIKVHQGGN------KKTRRQraidllNQVGIPDPASRLDVYPHQ- 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 151 FSGGEKKRNEILQMSLLKPKLSVLDETDSGLD--IDAlRIVSEGINRNKTPERSILLITH 208
Cdd:PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDvtIQA-QIIELLLELQQKENMALVLITH 212
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
26-212 |
6.79e-09 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 55.11 E-value: 6.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVL---SGDILFEGKSI----LN----LPtDERarlGIFlcfq 94
Cdd:COG4152 17 VDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILG-----ILapdSGEVLWDGEPLdpedRRrigyLP-EER---GLY---- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 95 yptsiPGVTIGNflkTIVKSVRGKELPVKEFRKELKESMAALDMPEsfiarYVNDG---FSGGEKKRneiLQM--SLL-K 168
Cdd:COG4152 84 -----PKMKVGE---QLVYLARLKGLSKAEAKRRADEWLERLGLGD-----RANKKveeLSKGNQQK---VQLiaALLhD 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446058202 169 PKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITHyqRM 212
Cdd:COG4152 148 PELLILDEPFSGLDPVNVELLKDVIRELAAKGTTVIFSSH--QM 189
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-58 |
8.11e-09 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 54.70 E-value: 8.11e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446058202 1 MTEILKIQNL----------------KAGIQTGDSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG 58
Cdd:COG1134 1 MSSMIEVENVsksyrlyhepsrslkeLLLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAG 74
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
23-208 |
8.41e-09 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 54.71 E-value: 8.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSIlNLPTDERArlgifLCFQYPTSIPgv 102
Cdd:PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPV-EGPGAERG-----VVFQNEGLLP-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tignfLKTIVKSVR-GKELP--VKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:PRK11248 84 -----WRNVQDNVAfGLQLAgvEKMQRLEIAHQMLKKVGLEGAEKRYIWQ-LSGGQRQRVGIARALAANPQLLLLDEPFG 157
|
170 180 190
....*....|....*....|....*....|....*....
gi 446058202 180 GLDidalrivseGINRNKTPE----------RSILLITH 208
Cdd:PRK11248 158 ALD---------AFTREQMQTlllklwqetgKQVLLITH 187
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
4-240 |
9.18e-09 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 55.63 E-value: 9.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNL------KAGIQTGDSGEIkEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSIL 77
Cdd:PRK10261 313 ILQVRNLvtrfplRSGLLNRVTREV-HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ--GGEIIFNGQRID 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 78 NLPTD--ERARLGIFLCFQ--YPTSIPGVTIGNflkTIVKSVRGKEL-PVKEFRKELKESMAALDMPESFIARYVNDgFS 152
Cdd:PRK10261 390 TLSPGklQALRRDIQFIFQdpYASLDPRQTVGD---SIMEPLRVHGLlPGKAAAARVAWLLERVGLLPEHAWRYPHE-FS 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 153 GGEKKRNEILQMSLLKPKLSVLDETDSGLDIDalrIVSEGINRNKTPER----SILLITHYQRMLNYITPDfVHVFAKGK 228
Cdd:PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVS---IRGQIINLLLDLQRdfgiAYLFISHDMAVVERISHR-VAVMYLGQ 541
|
250
....*....|..
gi 446058202 229 ILKTGTRELALE 240
Cdd:PRK10261 542 IVEIGPRRAVFE 553
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
29-76 |
9.82e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 55.19 E-value: 9.82e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSI 76
Cdd:COG4615 351 IDLTIRRGELVFIVGGNGSGKSTLAKLLTGL--YRPESGEILLDGQPV 396
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
26-94 |
1.36e-08 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 54.31 E-value: 1.36e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqvL----SGDILFEGKSILNLPTDE--RARLGIFLCFQ 94
Cdd:COG1135 21 LDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINL------LerptSGSVLVDGVDLTALSERElrAARRKIGMIFQ 89
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
32-183 |
1.55e-08 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 53.78 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 32 TIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYqvlSGDILFEGKSILNLPTDERARLGIFLC-----------FQYPT-SI 99
Cdd:PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELARHRAYLSqqqtppfampvFQYLTlHQ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PGVTignflktivksvrgkelPVKEFRKELKEsMAALDMPESFIARYVNDgFSGGEKKR----NEILQM-SLLKP--KLS 172
Cdd:PRK03695 95 PDKT-----------------RTEAVASALNE-VAEALGLDDKLGRSVNQ-LSGGEWQRvrlaAVVLQVwPDINPagQLL 155
|
170
....*....|.
gi 446058202 173 VLDETDSGLDI 183
Cdd:PRK03695 156 LLDEPMNSLDV 166
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
23-233 |
1.56e-08 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 53.86 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSilnLPTDERARLG----IFLCFQYPTS 98
Cdd:PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQGKP---LDYSKRGLLAlrqqVATVFQDPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 ipGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDmPESFIARYVNdGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK13638 89 --QIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD-AQHFRHQPIQ-CLSHGQKKRVAIAGALVLQARYLLLDEPT 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 179 SGLDiDALRIVSEGINRNKTPERSILLITHYQRMLNYITPDFVHVFAKGKILKTG 233
Cdd:PRK13638 165 AGLD-PAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
26-208 |
1.59e-08 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 54.02 E-value: 1.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTL-------SNVImghPKYQVlSGDILFEGKSILNL---PTDERARLGifLCFQY 95
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTIlrcfnrlNDLI---PGFRV-EGKVTFHGKNLYAPdvdPVEVRRRIG--MVFQK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 96 PTSIP---------GVTI----GNFLKTIVKSVRGKELpVKEFRKELKESMAALdmpesfiaryvndgfSGGEKKRNEIL 162
Cdd:PRK14243 100 PNPFPksiydniayGARIngykGDMDELVERSLRQAAL-WDEVKDKLKQSGLSL---------------SGGQQQRLCIA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446058202 163 QMSLLKPKLSVLDETDSGLD-IDALRIvsEGINRNKTPERSILLITH 208
Cdd:PRK14243 164 RAIAVQPEVILMDEPCSALDpISTLRI--EELMHELKEQYTIIIVTH 208
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
23-197 |
1.91e-08 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 53.84 E-value: 1.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MGHPkyqvLSGDILFEGKSILNLPTDERARLgIFLCFQYPTSIP 100
Cdd:PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLsrLMTP----AHGHVWLDGEHIQHYASKEVARR-IGLLAQNATTPG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 101 GVTIgnflKTIVKSVRGKELPV-KEFRKELKESMAALdMPESFIARYVN---DGFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:PRK10253 95 DITV----QELVARGRYPHQPLfTRWRKEDEEAVTKA-MQATGITHLADqsvDTLSGGQRQRAWIAMVLAQETAIMLLDE 169
|
170 180
....*....|....*....|....*
gi 446058202 177 TDSGLD----IDALRIVSEgINRNK 197
Cdd:PRK10253 170 PTTWLDishqIDLLELLSE-LNREK 193
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
28-214 |
2.27e-08 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 52.80 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERA--RLGIFLCFQYPTSIPGVTIg 105
Cdd:cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT--SGTIRVNGQDVSDLRGRAIPylRRKIGVVFQDFRLLPDRNV- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 nfLKTIVKSVRGKELPVKEFRKELKESMAALDMpeSFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDID- 184
Cdd:cd03292 96 --YENVAFALEVTGVPPREIRKRVPAALELVGL--SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDt 171
|
170 180 190
....*....|....*....|....*....|..
gi 446058202 185 ALRIVS--EGINRNKTperSILLITHYQRMLN 214
Cdd:cd03292 172 TWEIMNllKKINKAGT---TVVVATHAKELVD 200
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
24-234 |
2.51e-08 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 53.25 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERARLgIFLCFQYP-TSI- 99
Cdd:PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGmiEPT----SGELLIDDHPLHFGDYSYRSQR-IRMIFQDPsTSLn 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PGVTIGNFLKTIVKsvRGKELPVKEFRKELKESMAALDM-PESfiARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK15112 102 PRQRISQILDFPLR--LNTDLEPEQREKQIIETLRQVGLlPDH--ASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 179 SGLDIdALRivSEGIN----RNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGT 234
Cdd:PRK15112 178 ASLDM-SMR--SQLINlmleLQEKQGISYIYVTQHLGMMKHIS-DQVLVMHQGEVVERGS 233
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
24-182 |
2.56e-08 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 52.90 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDERARL---GIFLCFQYPTS 98
Cdd:PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGldTPT----SGDVIFNGQPMSKLSSAAKAELrnqKLGFIYQFHHL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 IPGVTIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDMPESfiARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK11629 99 LPDFTA---LENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR--ANHRPSELSGGERQRVAIARALVNNPRLVLADEPT 173
|
....
gi 446058202 179 SGLD 182
Cdd:PRK11629 174 GNLD 177
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
29-76 |
3.50e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 53.58 E-value: 3.50e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSI 76
Cdd:PRK10982 17 VNLKVRPHSIHALMGENGAGKSTLLKCLFG--IYQKDSGSILFQGKEI 62
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1-233 |
3.90e-08 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 52.78 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKagIQTGdsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYQVLSGDILFEGKSIln 78
Cdd:PRK10418 1 MPQQIELRNIA--LQAA-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGilPAGVRQTAGRVLLDGKPV-- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 79 LPTDERARLgIFLCFQYPTSI--PGVTIGNFLKTIVKsVRGKELPVKEFRKELKEsmAALDMPESFIARYVNDgFSGGEK 156
Cdd:PRK10418 72 APCALRGRK-IATIMQNPRSAfnPLHTMHTHARETCL-ALGKPADDATLTAALEA--VGLENAARVLKLYPFE-MSGGML 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 157 KRNEIlQMSLL--KPKLsVLDETDSGLDIDA-LRIVS--EGINRNKTPerSILLITHYQRMLNYITPDfVHVFAKGKILK 231
Cdd:PRK10418 147 QRMMI-ALALLceAPFI-IADEPTTDLDVVAqARILDllESIVQKRAL--GMLLVTHDMGVVARLADD-VAVMSHGRIVE 221
|
..
gi 446058202 232 TG 233
Cdd:PRK10418 222 QG 223
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
32-224 |
4.76e-08 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 52.41 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 32 TIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVlsGDILFEGKSILNLPtderarlgiflcfQYPTSIPGVTIGNFLKTI 111
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDE--GDIEIELDTVSYKP-------------QYIKADYEGTVRDLLSSI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 112 VKSVrgkeLPVKEFRKELkesMAALDMpESFIARYVNDgFSGGEKKRNEILqMSLLKP-KLSVLDETDSGLDIDALRIVS 190
Cdd:cd03237 86 TKDF----YTHPYFKTEI---AKPLQI-EQILDREVPE-LSGGELQRVAIA-ACLSKDaDIYLLDEPSAYLDVEQRLMAS 155
|
170 180 190
....*....|....*....|....*....|....*..
gi 446058202 191 EGINR---NKtpERSILLITHYQRMLNYITpDFVHVF 224
Cdd:cd03237 156 KVIRRfaeNN--EKTAFVVEHDIIMIDYLA-DRLIVF 189
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
23-89 |
6.10e-08 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 52.79 E-value: 6.10e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLPTDE-RARLGI 89
Cdd:PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH--FDVSEGDIRFHDIPLTKLQLDSwRSRLAV 393
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
4-208 |
6.28e-08 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 51.70 E-value: 6.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTGDSgEIkEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDE 83
Cdd:PRK10584 6 IVEVHHLKKSVGQGEH-EL-SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPLHQMDEEA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARL---GIFLCFQYPTSIPGVtigNFLKTIvksvrgkELPV-------KEFRKELKESMAALDMPESFiaRYVNDGFSG 153
Cdd:PRK10584 82 RAKLrakHVGFVFQSFMLIPTL---NALENV-------ELPAllrgessRQSRNGAKALLEQLGLGKRL--DHLPAQLSG 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 154 GEKKRNEILQMSLLKPKLSVLDETDSGLDID-ALRIVSEGINRNKTPERSILLITH 208
Cdd:PRK10584 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQtGDKIADLLFSLNREHGTTLILVTH 205
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
21-234 |
6.60e-08 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 51.64 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 21 EIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLP-TDERARLGIFLcfQYPTSI 99
Cdd:cd03369 19 DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--LEAEEGKIEIDGIDISTIPlEDLRSSLTIIP--QDPTLF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PGvtignflktivkSVRGKELPVKEFRKElkESMAALDMPESfiaryvNDGFSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:cd03369 95 SG------------TIRSNLDPFDEYSDE--EIYGALRVSEG------GLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 180 GLDIDALRIVSEGInRNKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT 234
Cdd:cd03369 155 SIDYATDALIQKTI-REEFTNSTILTIAH--RLRTIIDYDKILVMDAGEVKEYDH 206
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
23-208 |
9.51e-08 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 51.67 E-value: 9.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MGHPKY-QVLSGDILFEGKSILN----LPTDERARLGI----FL 91
Cdd:PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCInlLEQPEAgTIRVGDITIDTARSLSqqkgLIRQLRQHVGFvfqnFN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 92 CFQYPTSIPGVTIGnflKTIVKSV-------RGKELPVKefrkelkesmAALDMPESFIARYVndgfSGGEKKRNEILQM 164
Cdd:PRK11264 96 LFPHRTVLENIIEG---PVIVKGEpkeeataRARELLAK----------VGLAGKETSYPRRL----SGGQQQRVAIARA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446058202 165 SLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
25-184 |
9.81e-08 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 52.15 E-value: 9.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVLS---GDILFEGKSILNLPTDERARLgiflcfqyPTSIPG 101
Cdd:PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING-----TLTptaGTVLVAGDDVEALSARAASRR--------VASVPQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 VTIGNF---LKTIVKSVR----GKELPVKEF-RKELKESMAALDMpESFIARYVnDGFSGGEKKRnEILQMSLLK--PKL 171
Cdd:PRK09536 85 DTSLSFefdVRQVVEMGRtphrSRFDTWTETdRAAVERAMERTGV-AQFADRPV-TSLSGGERQR-VLLARALAQatPVL 161
|
170
....*....|...
gi 446058202 172 sVLDETDSGLDID 184
Cdd:PRK09536 162 -LLDEPTASLDIN 173
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
19-234 |
1.07e-07 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 50.96 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 19 SGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDE-RARLGIFLcfQYPT 97
Cdd:cd03244 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFR--LVELSSGSILIDGVDISKIGLHDlRSRISIIP--QDPV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 98 SIPGvTI-------GNF----LKTIVKSVRGKELpvkefrkeLKESMAALDMPESfiaryvNDG--FSGGEKkrneilQM 164
Cdd:cd03244 89 LFSG-TIrsnldpfGEYsdeeLWQALERVGLKEF--------VESLPGGLDTVVE------EGGenLSVGQR------QL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 165 -----SLL-KPKLSVLDETDSGLDIDALRIVSEGInRNKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT 234
Cdd:cd03244 148 lclarALLrKSKILVLDEATASVDPETDALIQKTI-REAFKDCTVLTIAH--RLDTIIDSDRILVLDKGRVVEFDS 220
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
28-94 |
1.71e-07 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 50.61 E-value: 1.71e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlsGDILFEGKSILNLPTDERARLGIFLCFQ 94
Cdd:COG4138 14 PISAQVNAGELIHLIGPNGAGKSTLLARMAGLLPGQ---GEILLNGRPLSDWSAAELARHRAYLSQQ 77
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
4-208 |
1.87e-07 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 49.93 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTgdSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGKsilnlPTDE 83
Cdd:cd03232 3 VLTWKNLNYTVPV--KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR-----PLDK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLGIFLCFQYPTSIPGVTIgnflktivksvrgkelpvkefRKELKESmAALdmpesfiaRyvndGFSGGEKKRNEILQ 163
Cdd:cd03232 76 NFQRSTGYVEQQDVHSPNLTV---------------------REALRFS-ALL--------R----GLSVEQRKRLTIGV 121
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 446058202 164 MSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
26-208 |
1.91e-07 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 50.72 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDE-----RARLGifLCFQYPTSIP 100
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR--LIEPTSGKVLIDGQDIAAMSRKElrelrRKKIS--MVFQSFALLP 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 101 GVTIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSG 180
Cdd:cd03294 116 HRTV---LENVAFGLEVQGVPRAEREERAAEALELVGL-EGWEHKYPDE-LSGGMQQRVGLARALAVDPDILLMDEAFSA 190
|
170 180 190
....*....|....*....|....*....|....*.
gi 446058202 181 LD--IDA------LRIVSEginrnktPERSILLITH 208
Cdd:cd03294 191 LDplIRRemqdelLRLQAE-------LQKTIVFITH 219
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
28-74 |
2.21e-07 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 51.07 E-value: 2.21e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGK 74
Cdd:PRK11288 22 DISFDCRAGQVHALMGENGAGKSTLLKILSG--NYQPDAGSILIDGQ 66
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
23-234 |
2.42e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 51.00 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlsGDILFEGKSILNL-PTDERARL---GiflcfQYPTS 98
Cdd:PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ---GSLKINGIELRELdPESWRKHLswvG-----QNPQL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 IPG-----VTIGNF------LKTIVKSVRgkelpVKEFRKELKEsmaALDMPesfiaryVND---GFSGGEKKRneI-LQ 163
Cdd:PRK11174 435 PHGtlrdnVLLGNPdasdeqLQQALENAW-----VSEFLPLLPQ---GLDTP-------IGDqaaGLSVGQAQR--LaLA 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 164 MSLLKP-KLSVLDETDSGLDIDALRIVSEGINRNkTPERSILLITH-YQRMLNYitpDFVHVFAKGKILKTGT 234
Cdd:PRK11174 498 RALLQPcQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHqLEDLAQW---DQIWVMQDGQIVQQGD 566
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
20-181 |
3.29e-07 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 49.88 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 20 GEIkEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSILNLPTDERARLGIFLC------F 93
Cdd:PRK11614 16 GKI-QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREAVAIVpegrrvF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 94 QYPTSIPGVTIGNFLKTivksvrgkelpvKEFRKELKESMAALdMPESFIARYVNDG-FSGGEKKRNEILQMSLLKPKLS 172
Cdd:PRK11614 93 SRMTVEENLAMGGFFAE------------RDQFQERIKWVYEL-FPRLHERRIQRAGtMSGGEQQMLAIGRALMSQPRLL 159
|
....*....
gi 446058202 173 VLDETDSGL 181
Cdd:PRK11614 160 LLDEPSLGL 168
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
23-87 |
4.44e-07 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 49.76 E-value: 4.44e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKsilNLPTDERARL 87
Cdd:PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG--QIAPDHGEILFDGE---NIPAMSRSRL 79
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
19-74 |
5.89e-07 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 49.07 E-value: 5.89e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 19 SGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGK 74
Cdd:cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG--IYPPDSGTVTVRGR 84
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
23-195 |
6.09e-07 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 48.72 E-value: 6.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERA--RLGIFLCFQ------ 94
Cdd:PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS--AGKIWFSGHDITRLKNREVPflRRQIGMIFQdhhllm 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 95 ----YP-TSIPGVTIGNFLKTIVKSVRGKelpvkefrkelKESMAALDMPESFIARyvndgFSGGEKKRNEILQMSLLKP 169
Cdd:PRK10908 93 drtvYDnVAIPLIIAGASGDDIRRRVSAA-----------LDKVGLLDKAKNFPIQ-----LSGGEQQRVGIARAVVNKP 156
|
170 180
....*....|....*....|....*.
gi 446058202 170 KLSVLDETDSGLDiDALrivSEGINR 195
Cdd:PRK10908 157 AVLLADEPTGNLD-DAL---SEGILR 178
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
31-183 |
6.70e-07 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 49.02 E-value: 6.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 31 LTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERARLGIFLCFQYPTSiPGVTIgnflKT 110
Cdd:PRK10575 32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGEILLDAQPLESWSSKAFARKVAYLPQQLPAA-EGMTV----RE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 111 IVKSVRgkeLPV--------KEFRKELKESMAALDMpESFIARYVnDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:PRK10575 105 LVAIGR---YPWhgalgrfgAADREKVEEAISLVGL-KPLAHRLV-DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
.
gi 446058202 183 I 183
Cdd:PRK10575 180 I 180
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-208 |
6.85e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 48.96 E-value: 6.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDsgeikEIVKGVDLTIRPGEVHAIMGPNGSGKSTL---SNVImghpkYQVLSGDILFEGKSIl 77
Cdd:PRK13647 1 MDNIIEVEDLHFRYKDGT-----KALKGLSLSIPEGSKTALLGPNGAGKSTLllhLNGI-----YLPQRGRVKVMGREV- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 78 NLPTDERARLGIFLCFQYPTSipgvtiGNFLKTIVKSV----RGKELPVKEFRKELKESMAALDMPEsfIARYVNDGFSG 153
Cdd:PRK13647 70 NAENEKWVRSKVGLVFQDPDD------QVFSSTVWDDVafgpVNMGLDKDEVERRVEEALKAVRMWD--FRDKPPYHLSY 141
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 154 GEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH 196
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
26-183 |
8.26e-07 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 49.19 E-value: 8.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MGHPKyqvlSGDILFEGKSILNLPTDERARL--GIFLCFQYP-TSI- 99
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLtmIETPT----GGELYYQGQDLLKADPEAQKLLrqKIQIVFQNPyGSLn 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PGVTIGNFLK------TivksvrgkELPVKEFRKELKESMAALDMPESFIARYVNdGFSGGEKKRNEILQMSLLKPKLSV 173
Cdd:PRK11308 107 PRKKVGQILEepllinT--------SLSAAERREKALAMMAKVGLRPEHYDRYPH-MFSGGQRQRIAIARALMLDPDVVV 177
|
170
....*....|
gi 446058202 174 LDETDSGLDI 183
Cdd:PRK11308 178 ADEPVSALDV 187
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
29-236 |
8.42e-07 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 49.10 E-value: 8.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPK--YQVLSGDILFEGKSILNLPTDERaRLGifLCFQ-------Ypt 97
Cdd:PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGltRPQkgRIVLNGRVLFDAEKGICLPPEKR-RIG--YVFQdarlfphY-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 98 sipgvtignflktivkSVRGK-ELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:PRK11144 92 ----------------KVRGNlRYGMAKSMVAQFDKIVALLGIEPLLDRYPGS-LSGGEKQRVAIGRALLTAPELLLMDE 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 177 TDSGLDI-------DALRIVSEGINrnkTPersILLITHyqrMLNYIT--PDFVHVFAKGKILKTGTRE 236
Cdd:PRK11144 155 PLASLDLprkrellPYLERLAREIN---IP---ILYVSH---SLDEILrlADRVVVLEQGKVKAFGPLE 214
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
27-253 |
9.13e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 49.44 E-value: 9.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 27 KGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLptDERA----------RLGIF------ 90
Cdd:PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA--WDPQQGEILLNGQPIADY--SEAAlrqaisvvsqRVHLFsatlrd 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 91 -LCFQYPTSipgvtIGNFLKTIVKSVrgkelpvkEFRKeLKESMAALDMpesfiarYVNDG---FSGGEKKRNEILQmSL 166
Cdd:PRK11160 433 nLLLAAPNA-----SDEALIEVLQQV--------GLEK-LLEDDKGLNA-------WLGEGgrqLSGGEQRRLGIAR-AL 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 167 LKPK-LSVLDETDSGLDIDALRIVSEGIN---RNKTpersILLITHYQRMLNYItpDFVHVFAKGKILKTGT-RELaleL 241
Cdd:PRK11160 491 LHDApLLLLDEPTEGLDAETERQILELLAehaQNKT----VLMITHRLTGLEQF--DRICVMDNGQIIEQGThQEL---L 561
|
250
....*....|..
gi 446058202 242 EEKGYDWILAES 253
Cdd:PRK11160 562 AQQGRYYQLKQR 573
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
3-233 |
9.76e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 48.93 E-value: 9.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAGIqtgdsgEIKEIvKGVDLTIRPGEVHAIMGPNGSGKSTL--------------SNVIMGHPKYQVLSGD 68
Cdd:PRK13651 7 NIVKIFNKKLPT------ELKAL-DNVSVEINQGEFIAIIGQTGSGKTTFiehlnalllpdtgtIEWIFKDEKNKKKTKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 69 I-LFEGKSILNLPT--------DERARLGIflCFQYPT-SIPGVTIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDM 138
Cdd:PRK13651 80 KeKVLEKLVIQKTRfkkikkikEIRRRVGV--VFQFAEyQLFEQTI---EKDIIFGPVSMGVSKEEAKKRAAKYIELVGL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 139 PESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD----IDALRIVSEGINRNKTpersILLITH-YQRML 213
Cdd:PRK13651 155 DESYLQRSPFE-LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDpqgvKEILEIFDNLNKQGKT----IILVTHdLDNVL 229
|
250 260
....*....|....*....|
gi 446058202 214 NYItpDFVHVFAKGKILKTG 233
Cdd:PRK13651 230 EWT--KRTIFFKDGKIIKDG 247
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
5-208 |
1.00e-06 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 49.42 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKagIQTGDSgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILF-EGKSILNLPtdE 83
Cdd:COG4178 363 LALEDLT--LRTPDG---RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPYG--SGRIARpAGARVLFLP--Q 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLGI-----FLCfqYPTSIPGVTignflktivksvrgkelpvkefRKELKESMAALDMPEsFIARY--VND---GFSG 153
Cdd:COG4178 434 RPYLPLgtlreALL--YPATAEAFS----------------------DAELREALEAVGLGH-LAERLdeEADwdqVLSL 488
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 154 GEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGInRNKTPERSILLITH 208
Cdd:COG4178 489 GEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALYQLL-REELPGTTVISVGH 542
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
23-236 |
1.02e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 48.65 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDErARLGIFLCFQYPTSipgv 102
Cdd:PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIRE-VRKFVGLVFQNPDD---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tiGNFLKTIVKSVR------GKELPVKEFRKELKESMAALdmpESFIARyVNDGFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:PRK13652 90 --QIFSPTVEQDIAfgpinlGLDEETVAHRVSSALHMLGL---EELRDR-VPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446058202 177 TDSGLDIDALRIVSEGINR-NKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGTRE 236
Cdd:PRK13652 164 PTAGLDPQGVKELIDFLNDlPETYGMTVIFSTHQLDLVPEMA-DYIYVMDKGRIVAYGTVE 223
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
26-76 |
1.14e-06 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 49.20 E-value: 1.14e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSI 76
Cdd:PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG--LYQPQSGEILLDGKPV 387
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
24-182 |
1.49e-06 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 48.54 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKSILNLPTDERaRLGI----FLCFQYPTSI 99
Cdd:PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHGTDVSRLHARDR-KVGFvfqhYALFRHMTVF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PGVTIGnfLKTIVKSVRGKELPVKefrkelKESMAALDMPE-SFIA-RYVNDgFSGGEKKRNEILQMSLLKPKLSVLDET 177
Cdd:PRK10851 93 DNIAFG--LTVLPRRERPNAAAIK------AKVTQLLEMVQlAHLAdRYPAQ-LSGGQKQRVALARALAVEPQILLLDEP 163
|
....*
gi 446058202 178 DSGLD 182
Cdd:PRK10851 164 FGALD 168
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
30-84 |
1.57e-06 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 47.65 E-value: 1.57e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 30 DLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDER 84
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGflTPA----SGSLTLNGQDHTTTPPSRR 71
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
25-87 |
1.66e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 47.90 E-value: 1.66e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGH------PKYQVLSGDILFEGKSILNLPTDERARL 87
Cdd:PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDltgggaPRGARVTGDVTLNGEPLAAIDAPRLARL 84
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
23-248 |
1.81e-06 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 48.56 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLpTDERARLGIFLCFQYPTsipgV 102
Cdd:PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY--YPLTEGEIRLDGRPLSSL-SHSVLRQGVAMVQQDPV----V 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPESFIARYVNDG--FSGGEKKRNEILQMSLLKPKLSVLDET--- 177
Cdd:PRK10790 427 LADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGnnLSVGQKQLLALARVLVQTPQILILDEAtan 506
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 178 -DSGLD---IDALRIVseginRNKTperSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRElALeLEEKGYDW 248
Cdd:PRK10790 507 iDSGTEqaiQQALAAV-----REHT---TLVVIAH--RLSTIVEADTILVLHRGQAVEQGTHQ-QL-LAAQGRYW 569
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-196 |
1.94e-06 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 47.70 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 1 MTEILKIQNLKAGIQTGDSgeikeiVKGVDLTIRPGEVHAIMGPNGSGKST----LSNVIMG----HPKYQVLSGDILFE 72
Cdd:PRK09984 1 MQTIIRVEKLAKTFNQHQA------LHAVDLNIHHGEMVALLGPSGSGKSTllrhLSGLITGdksaGSHIELLGRTVQRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 73 GKSILNLpTDERARLG-IFLCFQYP---TSIPGVTIGN-----FLKTIVKSVrgkelpVKEFRKELKESMAALDMPEsFI 143
Cdd:PRK09984 75 GRLARDI-RKSRANTGyIFQQFNLVnrlSVLENVLIGAlgstpFWRTCFSWF------TREQKQRALQALTRVGMVH-FA 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 446058202 144 ARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSE---GINRN 196
Cdd:PRK09984 147 HQRVST-LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDtlrDINQN 201
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
29-208 |
2.58e-06 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 47.15 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSIlnlPTDERARLgiflcFQYPTSIPGV---- 102
Cdd:PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGllHVE----SGQIQIDGKTA---TRGDRSRF-----MAYLGHLPGLkadl 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 -TIGN--FLKTIvKSVRGKELPVKEFrkelkeSMAALDMPESFIARYVndgfSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:PRK13543 98 sTLENlhFLCGL-HGRRAKQMPGSAL------AIVGLAGYEDTLVRQL----SAGQKKRLALARLWLSPAPLWLLDEPYA 166
|
170 180
....*....|....*....|....*....
gi 446058202 180 GLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:PRK13543 167 NLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
24-208 |
2.95e-06 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 46.58 E-value: 2.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPkyqvLSGDILFEGKSiLNLPTDERARLGIFLCFQyptsiPG 101
Cdd:TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGllRP----DSGEVRWNGTP-LAEQRDEPHENILYLGHL-----PG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 vtignfLKTivksvrgkELPVKE---F--------RKELKESMAA--LDMPESFIARYVndgfSGGEKKRNEILQMSLLK 168
Cdd:TIGR01189 84 ------LKP--------ELSALEnlhFwaaihggaQRTIEDALAAvgLTGFEDLPAAQL----SAGQQRRLALARLWLSR 145
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446058202 169 PKLSVLDETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:TIGR01189 146 RPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-96 |
3.36e-06 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 47.53 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLK----AGIQtgdsgeikeIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPkyQVLSGDILFEGKSILNLP 80
Cdd:PRK11650 4 LKLQAVRksydGKTQ---------VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--RITSGEIWIGGRVVNELE 72
|
90 100
....*....|....*....|
gi 446058202 81 TDERarlGIFLCFQ----YP 96
Cdd:PRK11650 73 PADR---DIAMVFQnyalYP 89
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
24-233 |
3.41e-06 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 46.89 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVI--MGHPKyqvlSGDILFEGKSIlNLPTDERARLGIF----------- 90
Cdd:PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCInfLEKPS----EGSIVVNGQTI-NLVRDKDGQLKVAdknqlrllrtr 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 91 --LCFQYptsipgVTIGNFLkTIVKSVrgKELPVK-------EFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEI 161
Cdd:PRK10619 94 ltMVFQH------FNLWSHM-TVLENV--MEAPIQvlglskqEARERAVKYLAKVGIDERAQGKYPVH-LSGGQQQRVSI 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 162 LQMSLLKPKLSVLDETDSGLDI----DALRIVSEGINRNKTpersILLITHYQRMLNYITPD--FVHvfaKGKILKTG 233
Cdd:PRK10619 164 ARALAMEPEVLLFDEPTSALDPelvgEVLRIMQQLAEEGKT----MVVVTHEMGFARHVSSHviFLH---QGKIEEEG 234
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
25-187 |
3.62e-06 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 45.99 E-value: 3.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDIlfegksilNLPTDErarlGIFLCFQYPTSIPGVti 104
Cdd:cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRI--------GMPEGE----DLLFLPQRPYLPLGT-- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 105 gnflktivksvrgkelpvkefrkeLKESmaaldmpesfIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDID 184
Cdd:cd03223 80 ------------------------LREQ----------LIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125
|
...
gi 446058202 185 ALR 187
Cdd:cd03223 126 SED 128
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
24-208 |
3.77e-06 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 47.92 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 24 EIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILFEGksilnLPTDER--ARLGIFlCFQYPTSIPG 101
Cdd:PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG-----FPKKQEtfARISGY-CEQNDIHSPQ 967
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 102 VTI------GNFLKtIVKSVrGKELPVKeFRKELKESMAALDMPESFIARYVNDGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:PLN03140 968 VTVresliySAFLR-LPKEV-SKEEKMM-FVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD 1044
|
170 180 190
....*....|....*....|....*....|...
gi 446058202 176 ETDSGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:PLN03140 1045 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
25-210 |
3.94e-06 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 47.33 E-value: 3.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 25 IVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPkyQVLSGDILFEGKSILNLPTDERarlGIFLCFQ----YP--TS 98
Cdd:PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--DITSGDLFIGEKRMNDVPPAER---GVGMVFQsyalYPhlSV 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 99 IPGVTIGNFLKTIVKSvrgkelpvkEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK11000 93 AENMSFGLKLAGAKKE---------EINQRVNQVAEVLQL-AHLLDRKPKA-LSGGQRQRVAIGRTLVAEPSVFLLDEPL 161
|
170 180 190
....*....|....*....|....*....|....
gi 446058202 179 SGLDIdALRI-VSEGINR-NKTPERSILLITHYQ 210
Cdd:PRK11000 162 SNLDA-ALRVqMRIEISRlHKRLGRTMIYVTHDQ 194
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
34-223 |
4.26e-06 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 46.59 E-value: 4.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 34 RPGEVHAIMGPNGSGKSTLSNVIMGH-----------PKYQvlsgDIL--FEGKSILNLPTDER-ARLGIFLCFQYPTSI 99
Cdd:cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKlkpnlgkfddpPDWD----EILdeFRGSELQNYFTKLLeGDVKVIVKPQYVDLI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 PgvtignflktivKSVRGKE---LPVKEFRKELKESMAALDMpESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDE 176
Cdd:cd03236 100 P------------KAVKGKVgelLKKKDERGKLDELVDQLEL-RHVLDRNIDQ-LSGGELQRVAIAAALARDADFYFFDE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 446058202 177 TDSGLDI----DALRIVSEGInrnkTPERSILLITHYQRMLNYITpDFVHV 223
Cdd:cd03236 166 PSSYLDIkqrlNAARLIRELA----EDDNYVLVVEHDLAVLDYLS-DYIHC 211
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
3-236 |
4.65e-06 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 47.16 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAGIQTgDSGEIkEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIM---GHPKYQVLSGDILFEGKS--IL 77
Cdd:PRK10261 11 DVLAVENLNIAFMQ-EQQKI-AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMrllEQAGGLVQCDKMLLRRRSrqVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 78 NLPTDERARL------GIFLCFQYP-TSI-PGVTIGnflKTIVKSVR-----GKELPVKEFRKELKEsmaaLDMPES--F 142
Cdd:PRK10261 89 ELSEQSAAQMrhvrgaDMAMIFQEPmTSLnPVFTVG---EQIAESIRlhqgaSREEAMVEAKRMLDQ----VRIPEAqtI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 143 IARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGIN-RNKTPERSILLITHYQRMLNYITpDFV 221
Cdd:PRK10261 162 LSRYPHQ-LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKvLQKEMSMGVIFITHDMGVVAEIA-DRV 239
|
250
....*....|....*
gi 446058202 222 HVFAKGKILKTGTRE 236
Cdd:PRK10261 240 LVMYQGEAVETGSVE 254
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
28-87 |
5.30e-06 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 46.46 E-value: 5.30e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvlSGDILFEGKS-----ILNLPTDERARL 87
Cdd:PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDgqlrdLYALSEAERRRL 86
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
5-236 |
5.92e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 46.44 E-value: 5.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 5 LKIQNLKAGIQTgdsgEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDE- 83
Cdd:cd03288 20 IKIHDLCVRYEN----NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR--MVDIFDGKIVIDGIDISKLPLHTl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 84 RARLGIFLcfQYPTSIPGVTIGNF--LKTIVKSVRGKELPVKEFRKELKESMAALDMpesfIARYVNDGFSGGEKKRNEI 161
Cdd:cd03288 94 RSRLSIIL--QDPILFSGSIRFNLdpECKCTDDRLWEALEIAQLKNMVKSLPGGLDA----VVTEGGENFSVGQRQLFCL 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 162 LQMSLLKPKLSVLDETDSGLDIDALRIVSEgINRNKTPERSILLITHyqRMLNYITPDFVHVFAKGKILKTGTRE 236
Cdd:cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQK-VVMTAFADRTVVTIAH--RVSTILDADLVLVLSRGILVECDTPE 239
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
18-74 |
7.25e-06 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 45.54 E-value: 7.25e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 18 DSGEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGK 74
Cdd:cd03250 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG--ELEKLSGSVSVPGS 67
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
21-104 |
7.33e-06 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 46.54 E-value: 7.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 21 EIKEIVK---------GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSI-LNLPTDERARlGIF 90
Cdd:PRK10762 6 QLKGIDKafpgvkalsGAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVtFNGPKSSQEA-GIG 82
|
90
....*....|....
gi 446058202 91 LCFQYPTSIPGVTI 104
Cdd:PRK10762 83 IIHQELNLIPQLTI 96
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
23-237 |
7.35e-06 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 46.31 E-value: 7.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYQVLS-GDILFEGKSILNLPTDERARLGIflCFQYPTSi 99
Cdd:PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAllKPTTGTVTvDDITITHKTKDKYIRPVRKRIGM--VFQFPES- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 100 pgvtiGNFLKTIVKSVrgkELPVKEFR---KELKESMAALDMPESFiARYVND----GFSGGEKKRNEILQMSLLKPKLS 172
Cdd:PRK13646 97 -----QLFEDTVEREI---IFGPKNFKmnlDEVKNYAHRLLMDLGF-SRDVMSqspfQMSGGQMRKIAIVSILAMNPDII 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446058202 173 VLDETDSGLDIDALRIVSEGINRNKTPE-RSILLITH-YQRMLNYItpDFVHVFAKGKILKTGT-REL 237
Cdd:PRK13646 168 VLDEPTAGLDPQSKRQVMRLLKSLQTDEnKTIILVSHdMNEVARYA--DEVIVMKEGSIVSQTSpKEL 233
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
26-234 |
7.69e-06 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 46.57 E-value: 7.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVImgHPKYQVLSGDILFEGKSILNLPTDER---ARLGIFLCFQYPTSIPGV 102
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELrevRRKKIAMVFQSFALMPHM 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 TIgnfLKTIVKSVRGKELPVKEFRKELKESMAALDMpESFIARYvNDGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLD 182
Cdd:PRK10070 122 TV---LDNTAFGMELAGINAEERREKALDALRQVGL-ENYAHSY-PDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446058202 183 -IDALRIVSEGINRNKTPERSILLITHYQRMLNYITpDFVHVFAKGKILKTGT 234
Cdd:PRK10070 197 pLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG-DRIAIMQNGEVVQVGT 248
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
23-184 |
8.44e-06 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 45.88 E-value: 8.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVLSGDilfEGKsilnLPTDERARLG-----IFLcfqyPT 97
Cdd:PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-----LVAPD---EGV----IKRNGKLRIGyvpqkLYL----DT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 98 SIPgVTIGNFLKTIVKSVRGKELPVkefrkeLKESMAA--LDMPESfiaryvndGFSGGEKKRNEILQMSLLKPKLSVLD 175
Cdd:PRK09544 81 TLP-LTVNRFLRLRPGTKKEDILPA------LKRVQAGhlIDAPMQ--------KLSGGETQRVLLARALLNRPQLLVLD 145
|
....*....
gi 446058202 176 ETDSGLDID 184
Cdd:PRK09544 146 EPTQGVDVN 154
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
23-76 |
1.54e-05 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 44.48 E-value: 1.54e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKyqVLSGDILFEGKSI 76
Cdd:PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDI 66
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
10-71 |
1.59e-05 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 45.39 E-value: 1.59e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446058202 10 LKAG-IQTGDsgeiKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPkyQVLSGD-ILF 71
Cdd:PRK10938 263 LNNGvVSYND----RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGdHP--QGYSNDlTLF 321
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
3-91 |
1.95e-05 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 45.39 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAGiqtgdsgeikEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG-HPKYqvlSGDILFEGKSI-LNLP 80
Cdd:COG1129 255 VVLEVEGLSVG----------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGaDPAD---SGEIRLDGKPVrIRSP 321
|
90 100
....*....|....*....|..
gi 446058202 81 TD-----------ERARLGIFL 91
Cdd:COG1129 322 RDairagiayvpeDRKGEGLVL 343
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
28-76 |
1.97e-05 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 44.41 E-value: 1.97e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPkyqvLSGDILFEGKSI 76
Cdd:PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGlaRP----DAGEVLWQGEPI 65
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
4-117 |
2.60e-05 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 44.79 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 4 ILKIQNLKAGIQTGDsGEIKeIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPK--YQVLSGDILFEGKSILNLPT 81
Cdd:PRK15093 3 LLDIRNLTIEFKTSD-GWVK-AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKdnWRVTADRMRFDDIDLLRLSP 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 446058202 82 DERARL---GIFLCFQYPTSI--PGVTIGnflKTIVKSVRG 117
Cdd:PRK15093 81 RERRKLvghNVSMIFQEPQSCldPSERVG---RQLMQNIPG 118
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
36-236 |
5.34e-05 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 43.33 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 36 GEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDIlfegkSILNLPTDERARLGIF--------LCFQYPTSIPGVT-IGN 106
Cdd:PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF--VRLASGKI-----SILGQPTRQALQKNLVayvpqseeVDWSFPVLVEDVVmMGR 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 107 FlktivKSVRGKELPVKEFRKELKESMAALDMPEsFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDA- 185
Cdd:PRK15056 106 Y-----GHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGE-LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTe 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446058202 186 LRIVSegINRNKTPE-RSILLITHYqrmLNYITP--DFVhVFAKGKILKTGTRE 236
Cdd:PRK15056 179 ARIIS--LLRELRDEgKTMLVSTHN---LGSVTEfcDYT-VMVKGTVLASGPTE 226
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
28-61 |
1.38e-04 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 39.12 E-value: 1.38e-04
10 20 30
....*....|....*....|....*....|....*...
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTL----SNVIMGHPK 61
Cdd:pfam13555 14 GHTIPIDPRGNTLLTGPSGSGKSTLldaiQTLLVPAKR 51
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
23-71 |
1.44e-04 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 42.48 E-value: 1.44e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQVLSGDILF 71
Cdd:TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
26-94 |
1.65e-04 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 42.10 E-value: 1.65e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKyqvlSGDILFEGKSILNLPTDE--RARLGIFLCFQ 94
Cdd:PRK11153 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLleRPT----SGRVLVDGQDLTALSEKElrKARRQIGMIFQ 89
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
30-214 |
2.37e-04 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 40.42 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 30 DLTIRPGEVHAIMGPNGSGKSTLSNVImghpKYqVLSGDILFEGKSILNLPTDERARLGIFLCFqyptsipgvtignflk 109
Cdd:cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAI----GL-ALGGAQSATRRRSGVKAGCIVAAVSAELIF---------------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 110 tivksvrgkelpvkeFRKELkesmaaldmpesfiaryvndgfSGGEKKRNE---ILQMSLLKPK-LSVLDETDSGLDIDA 185
Cdd:cd03227 74 ---------------TRLQL----------------------SGGEKELSAlalILALASLKPRpLYILDEIDRGLDPRD 116
|
170 180
....*....|....*....|....*....
gi 446058202 186 LRIVSEGINRNKTPERSILLITHYQRMLN 214
Cdd:cd03227 117 GQALAEAILEHLVKGAQVIVITHLPELAE 145
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
32-224 |
2.65e-04 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 41.72 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 32 TIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVL---SGDILFEGKsILNLPtderarlgiflcfQYPTSIPGVTIGNFL 108
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAG-----VLkpdEGEVDPELK-ISYKP-------------QYIKPDYDGTVEDLL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 109 KTIVKSVRGkelpvKEFRKELKESMAALDMPEsfiaRYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRI 188
Cdd:PRK13409 422 RSITDDLGS-----SYYKSEIIKPLQLERLLD----KNVKD-LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 491
|
170 180 190
....*....|....*....|....*....|....*....
gi 446058202 189 VSEGINR---NKtpERSILLITHYQRMLNYITpDFVHVF 224
Cdd:PRK13409 492 VAKAIRRiaeER--EATALVVDHDIYMIDYIS-DRLMVF 527
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
151-221 |
3.03e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 41.94 E-value: 3.03e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446058202 151 FSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDALRIVSEGINRNKTPERSI-LLITHYQRMLNYITPDFV 221
Cdd:PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRItIIIAHRLSTIRYANTIFV 651
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-185 |
3.51e-04 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 41.35 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 3 EILKIQNLKAgiQTGDSGEIKEiVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHPKYQvLSGDILFEGKSI------ 76
Cdd:TIGR02633 256 VILEARNLTC--WDVINPHRKR-VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK-FEGNVFINGKPVdirnpa 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 77 ------LNLPTDERARLGIFLCFQYPTSIPGVTIGNFLKTIVKSVRGKELPVKEFRKELKESMAALDMPesfIARyvndg 150
Cdd:TIGR02633 332 qairagIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP---IGR----- 403
|
170 180 190
....*....|....*....|....*....|....*
gi 446058202 151 FSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDA 185
Cdd:TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
27-245 |
6.23e-04 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 40.77 E-value: 6.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 27 KGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGHpkYQVLSGDILFEGKSILNLpTDERARLGIFLCFQyptsipgvTIGN 106
Cdd:PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRF--YDIDEGEILLDGHDLRDY-TLASLRNQVALVSQ--------NVHL 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 107 FLKTIVKSV---RGKELPVKEFRKELKesMA-ALDmpesFIARyVNDGF-----------SGGEKKRNEILQmSLLK--P 169
Cdd:PRK11176 429 FNDTIANNIayaRTEQYSREQIEEAAR--MAyAMD----FINK-MDNGLdtvigengvllSGGQRQRIAIAR-ALLRdsP 500
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446058202 170 KLsVLDETDSGLDIDALRIVSEGINRNKTpERSILLITHyqRMLNYITPDFVHVFAKGKILKTGT-RELaleLEEKG 245
Cdd:PRK11176 501 IL-ILDEATSALDTESERAIQAALDELQK-NRTSLVIAH--RLSTIEKADEILVVEDGEIVERGThAEL---LAQNG 570
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
28-73 |
6.31e-04 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 39.78 E-value: 6.31e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 446058202 28 GVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEG 73
Cdd:cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAG--LSPPLAGRVLLNG 61
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
21-58 |
7.38e-04 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 40.26 E-value: 7.38e-04
10 20 30
....*....|....*....|....*....|....*...
gi 446058202 21 EIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG 58
Cdd:PRK15064 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
26-234 |
7.46e-04 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 40.77 E-value: 7.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 26 VKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMGhpKYQVLSGDILFEGKSILNLPTDERARLGifLCFQYPTSIPGVTIG 105
Cdd:TIGR01257 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTG--LLPPTSGTVLVGGKDIETNLDAVRQSLG--MCPQHNILFHHLTVA 1021
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 106 NFLkTIVKSVRGKELPVKEFRKELKESMAALDMPESFIARyvndGFSGGEKKRNEILQMSLLKPKLSVLDETDSGLDIDA 185
Cdd:TIGR01257 1022 EHI-LFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 446058202 186 LRIVSEGINRNKTpERSILLITHYQRMLNyITPDFVHVFAKGKILKTGT 234
Cdd:TIGR01257 1097 RRSIWDLLLKYRS-GRTIIMSTHHMDEAD-LLGDRIAIISQGRLYCSGT 1143
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
29-208 |
8.89e-04 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 39.81 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 29 VDLTIRPGEVHAIMGPNGSGKSTLsnviMGHPKYQVL--SGDILFEGKSIlNLPTDERA----RLGIFLCFQYPTSipgv 102
Cdd:PRK13641 26 ISFELEEGSFVALVGHTGSGKSTL----MQHFNALLKpsSGTITIAGYHI-TPETGNKNlkklRKKVSLVFQFPEA---- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 103 tiGNFLKTIVKSV----RGKELPVKEFRKELKESMAALDMPESFIARYVNDgFSGGEKKRNEILQMSLLKPKLSVLDETD 178
Cdd:PRK13641 97 --QLFENTVLKDVefgpKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190
....*....|....*....|....*....|
gi 446058202 179 SGLDIDALRIVSEGINRNKTPERSILLITH 208
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
|
| ABC_SMC_head |
cd03239 |
The SMC head domain belongs to the ATP-binding cassette superfamily; The structural ... |
38-222 |
9.01e-04 |
|
The SMC head domain belongs to the ATP-binding cassette superfamily; The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Pssm-ID: 213206 [Multi-domain] Cd Length: 178 Bit Score: 39.21 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 38 VHAIMGPNGSGKSTLSNVI---MGHPKYQVLSGDILFEGKSiLNLPTDERARLGIFLCfqyptsipgvtIGNFLKTivks 114
Cdd:cd03239 24 FNAIVGPNGSGKSNIVDAIcfvLGGKAAKLRRGSLLFLAGG-GVKAGINSASVEITFD-----------KSYFLVL---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 115 vRGKelpVKEFrkelkesmaaldmpesfiaryvndgFSGGEKKRNE---ILQMSLLKPK-LSVLDETDSGLDIDALRIVS 190
Cdd:cd03239 88 -QGK---VEQI-------------------------LSGGEKSLSAlalIFALQEIKPSpFYVLDEIDAALDPTNRRRVS 138
|
170 180 190
....*....|....*....|....*....|....*.
gi 446058202 191 EGINRNKTPERSILLITHYQRMLN----YITPDFVH 222
Cdd:cd03239 139 DMIKEMAKHTSQFIVITLKKEMFEnadkLIGVLFVH 174
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
107-208 |
1.43e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 39.63 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 107 FLKTIVKSVR-GKELPVKEFRKELKESMAALDMPESFIARY-VNDG-----FSGGEKKRNEILQMSLLKPKLSVLDETDS 179
Cdd:PTZ00265 1308 FNMSIYENIKfGKEDATREDVKRACKFAAIDEFIESLPNKYdTNVGpygksLSGGQKQRIAIARALLREPKILLLDEATS 1387
|
90 100 110
....*....|....*....|....*....|
gi 446058202 180 GLDIDALRIVSEGINRNK-TPERSILLITH 208
Cdd:PTZ00265 1388 SLDSNSEKLIEKTIVDIKdKADKTIITIAH 1417
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
23-185 |
2.20e-03 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 39.14 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG--HPKYQvlsGDILFEGK-------------SILNLPTDeRARL 87
Cdd:PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGayPGRWE---GEIFIDGKpvkirnpqqaiaqGIAMVPED-RKRD 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 88 GIFLCFQYPTSIPGVTIGNF-----------LKTIVKSVrgKELPVKEFRKELKesmaaldmpesfIARyvndgFSGGEK 156
Cdd:PRK13549 351 GIVPVMGVGKNITLAALDRFtggsriddaaeLKTILESI--QRLKVKTASPELA------------IAR-----LSGGNQ 411
|
170 180
....*....|....*....|....*....
gi 446058202 157 KRNEILQMSLLKPKLSVLDETDSGLDIDA 185
Cdd:PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGA 440
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
20-58 |
2.23e-03 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 39.10 E-value: 2.23e-03
10 20 30
....*....|....*....|....*....|....*....
gi 446058202 20 GEIKEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG 58
Cdd:PRK13545 34 GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAG 72
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
22-52 |
4.00e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 37.99 E-value: 4.00e-03
10 20 30
....*....|....*....|....*....|....*.
gi 446058202 22 IKEI-VKG----VDLTIRPGEVHAIMGPNGSGKSTL 52
Cdd:COG4637 2 ITRIrIKNfkslRDLELPLGPLTVLIGANGSGKSNL 37
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
23-58 |
4.80e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 37.99 E-value: 4.80e-03
10 20 30
....*....|....*....|....*....|....*.
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG 58
Cdd:TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
23-58 |
4.80e-03 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 37.99 E-value: 4.80e-03
10 20 30
....*....|....*....|....*....|....*.
gi 446058202 23 KEIVKGVDLTIRPGEVHAIMGPNGSGKSTLSNVIMG 58
Cdd:TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
32-224 |
5.37e-03 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 37.84 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 32 TIRPGEVHAIMGPNGSGKSTLSNVIMGhpkyqVLSGDilfEGKSILNL-----PtderarlgiflcfQYPTSIPGVTIGN 106
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAG-----VLKPD---EGEVDEDLkisykP-------------QYISPDYDGTVEE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446058202 107 FLktivKSVRGKELPVKEFRKELKESMAALDMPEsfiaRYVNDgFSGGEKKRNEIlQMSLLKP-KLSVLDETDSGLDIDA 185
Cdd:COG1245 421 FL----RSANTDDFGSSYYKTEIIKPLGLEKLLD----KNVKD-LSGGELQRVAI-AACLSRDaDLYLLDEPSAHLDVEQ 490
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 446058202 186 LRIVSEGINR---NKtpERSILLITHYQRMLNYITpDFVHVF 224
Cdd:COG1245 491 RLAVAKAIRRfaeNR--GKTAMVVDHDIYLIDYIS-DRLMVF 529
|
|
| |
