|
Name |
Accession |
Description |
Interval |
E-value |
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
15-318 |
4.01e-79 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 243.80 E-value: 4.01e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 15 YLEDPTVFEIRINCFQEVICDTFSGRRVVQNAAITADFIRNLAKSLVSSNKLTMQAINDVI---LPGGIRGVICLPPAVI 91
Cdd:TIGR02788 1 FLDDEDVTEICINRPGEVWVEGPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILsatLPGGERVQIVIPPACE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 92 DGTTAVAFRKDLAADKNLEQLTSEGIFSDCRkitGSKQSLTDDDFFLKELHSSEKWPAFLQTAVEKKRTIVICGETGSGK 171
Cdd:TIGR02788 81 NDTVSITIRKPSLVDFSLDDYEEKGFFDTVR---AQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 172 TVLTRALLKSLHKDERVIILEDVHEVTVDHVvEAVYMMYG-DAGKIGRVSATDALRACMRLTPGRIIMTELRDDAAWDYL 250
Cdd:TIGR02788 158 TTFLKSLVDEIPKDERIITIEDTREIFLPHP-NYVHLFYSkGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFI 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446050741 251 KALNTGHPGGVMSTHANSARDAFNRIGLLIKATPIGRMLDMSDIMRMLYSTIDVVVHMEK----RKIKEIYF 318
Cdd:TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIVKLVREVIDIVVQINRrgggRKITEVYF 308
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
147-320 |
2.07e-66 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 206.62 E-value: 2.07e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 147 WPAFLQTAVEKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDH--VVEAVYMMYGDAGkiGRVSATDA 224
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHpnVVHLLTRPGGGEK--GEVTMADL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 225 LRACMRLTPGRIIMTELRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKATpiGRMLDMSDIMRMLYSTIDV 304
Cdd:cd01130 79 LKAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEA--GVNLDEEALRRLIASAIDV 156
|
170 180
....*....|....*....|.
gi 446050741 305 VVHMEK-----RKIKEIYFDP 320
Cdd:cd01130 157 IVHVKRlgdgvRRVTEIYEVP 177
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
4-316 |
4.56e-56 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 186.53 E-value: 4.56e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 4 AAFYQLGPLREYLEDPTVFEIRINCFQEVICDTFSGRRVVQNAAITADFIRNLAKSLVS--------SNKLTmqainDVI 75
Cdd:COG4962 51 DELFGLGPLEPLLDDPDVTDIMVNGPDEVFVERGGRLERTDVRFDSEEELRRLIERIAArvgrrldeSSPIV-----DAR 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 76 LPGGIRGVICLPPAVIDGTTaVAFRKdlaadknleqltsegiFSdcrkitgsKQSLTDDDffLKELHS-SEKWPAFLQTA 154
Cdd:COG4962 126 LPDGSRVNAVIPPVARDGPS-LSIRK----------------FR--------KRPLTLED--LVALGSlTPEMAEFLRAA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 155 VEKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHvvEAVYMMY---GDAGKIGRVSATDALRACMRL 231
Cdd:COG4962 179 VRARLNILVSGGTGSGKTTLLNALSGFIPPDERIVTIEDAAELQLQH--PHVVRLEtrpPNVEGAGEVTLRDLVRNALRM 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 232 TPGRIIMTELRDDAAWDYLKALNTGHPGGvMST-HANSARDAFNRIGLLIKATpiGRMLDMSDIMRMLYSTIDVVVHME- 309
Cdd:COG4962 257 RPDRIIVGEVRGAEALDMLQAMNTGHDGS-MSTlHANSARDALARLETLALMA--GENLPREAVRRQIASAIDLVVHLEr 333
|
330
....*....|.
gi 446050741 310 ----KRKIKEI 316
Cdd:COG4962 334 lrdgRRRVTEI 344
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
9-321 |
4.98e-48 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 164.69 E-value: 4.98e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 9 LGPLREYLEDPTVFEIRIN----CF--QEVICDTFS---GRRVVQNAAITADFIRNlaKSLVSSNKLTMQAindviLPGG 79
Cdd:PRK13851 11 LKPVLEWLDDPRTEEVAINrpgeAFvrQAGVFTKFPlplSYDDLEDIAILAGALRK--QDVGPRNPLCATE-----LPGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 80 IRGVICLPPAVIDGTTAVAFRKDLAADKNLEQLTSEGIFSDCRKITGSKQSLTDDDFFLKELHSSEKWPAFLQTAVEKKR 159
Cdd:PRK13851 84 ERLQICLPPTVPSGTVSLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQLDEAILRHYDNGDLEAFLHACVVGRL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 160 TIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHVvEAVYMMYG-DAGKIGRVSATDALRACMRLTPGRIIM 238
Cdd:PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHE-NHVRLLYSkNGAGLGAVTAEHLLQASLRMRPDRILL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 239 TELRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKATPIGRMLDMSDIMRMLYSTIDVVV----HMEKRKIK 314
Cdd:PRK13851 243 GEMRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAIDVIVpfraYGDVYEVG 322
|
....*..
gi 446050741 315 EIYFDPE 321
Cdd:PRK13851 323 EIWLAAD 329
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
149-306 |
1.66e-20 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 89.27 E-value: 1.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 149 AFLQTAvekKRTIVICGETGSGKTVLTRALLKSLHK-DERVIILEDVHEVTVDHV----VEAVymmygdagkiGRVSATD 223
Cdd:pfam00437 124 EFLRQP---RGNILVTGPTGSGKTTTLYAALGELNTrDENIVTVEDPVEIQLEGInqvqLNAR----------AGVTFAD 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 224 ALRACMRLTPGRIIMTELRD-DAAWDYLKALNTGHPggVMST-HANSARDAfnrigllikatpIGRMLDMSDIMRMLYST 301
Cdd:pfam00437 191 LLRAILRQDPDRIMVGEIRDlETAEIALQAANTGHL--VLSTlHTNSAAGA------------LTRLQDMGVPPFELASS 256
|
....*
gi 446050741 302 IDVVV 306
Cdd:pfam00437 257 LLLVI 261
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
157-237 |
2.90e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.43 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 157 KKRTIVICGETGSGKTVLTRALLKSLHKDE-RVIILEDVHEVTVDHVVEAVYMMYGDAGKIGRVSATDALRACMRLTPGR 235
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGgGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
|
..
gi 446050741 236 II 237
Cdd:smart00382 81 VL 82
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
15-318 |
4.01e-79 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 243.80 E-value: 4.01e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 15 YLEDPTVFEIRINCFQEVICDTFSGRRVVQNAAITADFIRNLAKSLVSSNKLTMQAINDVI---LPGGIRGVICLPPAVI 91
Cdd:TIGR02788 1 FLDDEDVTEICINRPGEVWVEGPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILsatLPGGERVQIVIPPACE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 92 DGTTAVAFRKDLAADKNLEQLTSEGIFSDCRkitGSKQSLTDDDFFLKELHSSEKWPAFLQTAVEKKRTIVICGETGSGK 171
Cdd:TIGR02788 81 NDTVSITIRKPSLVDFSLDDYEEKGFFDTVR---AQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 172 TVLTRALLKSLHKDERVIILEDVHEVTVDHVvEAVYMMYG-DAGKIGRVSATDALRACMRLTPGRIIMTELRDDAAWDYL 250
Cdd:TIGR02788 158 TTFLKSLVDEIPKDERIITIEDTREIFLPHP-NYVHLFYSkGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFI 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446050741 251 KALNTGHPGGVMSTHANSARDAFNRIGLLIKATPIGRMLDMSDIMRMLYSTIDVVVHMEK----RKIKEIYF 318
Cdd:TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIVKLVREVIDIVVQINRrgggRKITEVYF 308
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
147-320 |
2.07e-66 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 206.62 E-value: 2.07e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 147 WPAFLQTAVEKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDH--VVEAVYMMYGDAGkiGRVSATDA 224
Cdd:cd01130 1 MAAFLRLAVRARKNILISGGTGSGKTTLLNALLSFIPPDERIVTIEDTRELQLPHpnVVHLLTRPGGGEK--GEVTMADL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 225 LRACMRLTPGRIIMTELRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKATpiGRMLDMSDIMRMLYSTIDV 304
Cdd:cd01130 79 LKAALRMRPDRIIVGEVRGGEAYDMLQAMNTGHPGSITTIHANSAEDAIDRLATLVLEA--GVNLDEEALRRLIASAIDV 156
|
170 180
....*....|....*....|.
gi 446050741 305 VVHMEK-----RKIKEIYFDP 320
Cdd:cd01130 157 IVHVKRlgdgvRRVTEIYEVP 177
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
4-316 |
4.56e-56 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 186.53 E-value: 4.56e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 4 AAFYQLGPLREYLEDPTVFEIRINCFQEVICDTFSGRRVVQNAAITADFIRNLAKSLVS--------SNKLTmqainDVI 75
Cdd:COG4962 51 DELFGLGPLEPLLDDPDVTDIMVNGPDEVFVERGGRLERTDVRFDSEEELRRLIERIAArvgrrldeSSPIV-----DAR 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 76 LPGGIRGVICLPPAVIDGTTaVAFRKdlaadknleqltsegiFSdcrkitgsKQSLTDDDffLKELHS-SEKWPAFLQTA 154
Cdd:COG4962 126 LPDGSRVNAVIPPVARDGPS-LSIRK----------------FR--------KRPLTLED--LVALGSlTPEMAEFLRAA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 155 VEKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHvvEAVYMMY---GDAGKIGRVSATDALRACMRL 231
Cdd:COG4962 179 VRARLNILVSGGTGSGKTTLLNALSGFIPPDERIVTIEDAAELQLQH--PHVVRLEtrpPNVEGAGEVTLRDLVRNALRM 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 232 TPGRIIMTELRDDAAWDYLKALNTGHPGGvMST-HANSARDAFNRIGLLIKATpiGRMLDMSDIMRMLYSTIDVVVHME- 309
Cdd:COG4962 257 RPDRIIVGEVRGAEALDMLQAMNTGHDGS-MSTlHANSARDALARLETLALMA--GENLPREAVRRQIASAIDLVVHLEr 333
|
330
....*....|.
gi 446050741 310 ----KRKIKEI 316
Cdd:COG4962 334 lrdgRRRVTEI 344
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
9-321 |
4.98e-48 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 164.69 E-value: 4.98e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 9 LGPLREYLEDPTVFEIRIN----CF--QEVICDTFS---GRRVVQNAAITADFIRNlaKSLVSSNKLTMQAindviLPGG 79
Cdd:PRK13851 11 LKPVLEWLDDPRTEEVAINrpgeAFvrQAGVFTKFPlplSYDDLEDIAILAGALRK--QDVGPRNPLCATE-----LPGG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 80 IRGVICLPPAVIDGTTAVAFRKDLAADKNLEQLTSEGIFSDCRKITGSKQSLTDDDFFLKELHSSEKWPAFLQTAVEKKR 159
Cdd:PRK13851 84 ERLQICLPPTVPSGTVSLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQLDEAILRHYDNGDLEAFLHACVVGRL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 160 TIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHVvEAVYMMYG-DAGKIGRVSATDALRACMRLTPGRIIM 238
Cdd:PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHE-NHVRLLYSkNGAGLGAVTAEHLLQASLRMRPDRILL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 239 TELRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKATPIGRMLDMSDIMRMLYSTIDVVV----HMEKRKIK 314
Cdd:PRK13851 243 GEMRDDAAWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAIDVIVpfraYGDVYEVG 322
|
....*..
gi 446050741 315 EIYFDPE 321
Cdd:PRK13851 323 EIWLAAD 329
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
9-318 |
2.31e-42 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 149.52 E-value: 2.31e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 9 LGPLREYLEDPTVFEIRINCFQEVICDTFSGRRVVQNAAITADFIRNLAKSLVSSnklTMQAIND------VILPGGIRG 82
Cdd:PRK13900 12 LEPLKNIFAEDGVNEISINKPGEVWVEKKGDIRCEQIPELDLSHLKALGRLVAQA---TEQKISEekpllsATLPNGYRI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 83 VICLPPAVIDGTTAVAFRKDLAADKNLEQLTSEGIFSDcrkiTGSKQSLTDDDFFLKELHSSEKWPAFLQTAVEKKRTIV 162
Cdd:PRK13900 89 QIVFPPACEIGQIVYSIRKPSGMQLTLDDYEKMGAFDE----TATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNII 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 163 ICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHVVEAVYMMYGDAGKiGR--VSATDALRACMRLTPGRIIMTE 240
Cdd:PRK13900 165 ISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQ-GRakVTTQDLIEACLRLRPDRIIVGE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 241 LRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKATPIGRMLDmsDIMRMLYSTIDVVVHME-----KRKIKE 315
Cdd:PRK13900 244 LRGAEAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLGMPPD--QIKKYILNVVDIVVQLKrgsggKRYVSE 321
|
...
gi 446050741 316 IYF 318
Cdd:PRK13900 322 IYF 324
|
|
| heli_sec_ATPase |
TIGR03819 |
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct ... |
9-316 |
5.88e-34 |
|
helicase/secretion neighborhood ATPase; Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Pssm-ID: 200328 Cd Length: 340 Bit Score: 127.45 E-value: 5.88e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 9 LGPLREYLEDPTVFEIRINCFQEVICDTFSGRRVVQNAAITADFIRNLAKSLVSS--NKL-TMQAINDVILPGGIRGVIC 85
Cdd:TIGR03819 52 AGPLEPLLADPGVTDVLVNGPDEVWVDRGRGLERTDVRFPDEAAVRRLAQRLAAAagRRLdDAQPWVDARLPDGTRLHAV 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 86 LPPAVIDGTtAVAFRKDLAADKNLEQLTSEGIFS-DCRKItgskqsltdddfflkelhssekwpafLQTAVEKKRTIVIC 164
Cdd:TIGR03819 132 LPPVATDGT-CLSLRVPRRRTFTLDELVAAGTIPpGVARL--------------------------LRALVAARLAFLVS 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 165 GETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDH--VVeAVYMMYGDAGKIGRVSATDALRACMRLTPGRIIMTELR 242
Cdd:TIGR03819 185 GGTGSGKTTLLSALLALVPPDERIVLVEDAAELRPDHphVV-RLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVR 263
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446050741 243 DDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLikATPIGrmLDMSDIMRMLYSTIDVVVHMEK-----RKIKEI 316
Cdd:TIGR03819 264 GAEVVDLLAALNTGHDGGAGTLHANSPADVPARLEAL--GALAG--LDRAALHSQLAAALDVVLHVRRtprgrRRVAEI 338
|
|
| TrbB_P |
TIGR02782 |
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of ... |
9-316 |
2.22e-33 |
|
P-type conjugative transfer ATPase TrbB; The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. [Cellular processes, Conjugation]
Pssm-ID: 274297 Cd Length: 299 Bit Score: 124.85 E-value: 2.22e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 9 LGP-LREYLEDPTVFEIRINCFQEVICDTFSG--RRVVQNAAITADFIRNLAKSLVSSNKLTMQAINDVILP-GGIRGVI 84
Cdd:TIGR02782 6 LGPeIAAALDDPGVVEIMLNPDGRLWVERLGSgmSPLGEMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPlDGSRFEG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 85 CLPPAVidGTTAVAFRKDLAADKNLEQLTSEGIFSdcrkitgskqsltdddfflkelhssEKWPAFLQTAVEKKRTIVIC 164
Cdd:TIGR02782 86 LIPPVV--AAPSFAIRKKAVAVFTLDDYVEAGIMT-------------------------AAQRDVLREAVLARKNILVV 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 165 GETGSGKTVLTRALLKSLHK---DERVIILEDVHEVTVdHVVEAVYMMYGDagkiGRVSATDALRACMRLTPGRIIMTEL 241
Cdd:TIGR02782 139 GGTGSGKTTLANALLAEIAKndpTDRVVIIEDTRELQC-AAPNVVQLRTSD----DAISMTRLLKATLRLRPDRIIVGEV 213
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446050741 242 RDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKatpigrMLDMSDIMRMLYSTIDVVVHMEK----RKIKEI 316
Cdd:TIGR02782 214 RGGEALDLLKAWNTGHPGGIATIHANNAKAALDRLEQLIQ------EVSVTPMQTLIAEAVDLVIFIARtpagRRVQEI 286
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
155-317 |
9.89e-26 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 100.93 E-value: 9.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 155 VEKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHVVEAVYMMYGdagkiGRVSATDALRACMRLTPG 234
Cdd:cd19477 7 IAIGKNVIVCGGTGSGKTTYIKSILEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-----GNITSADCLKSCLRQRPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 235 RIIMTELRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLIKATPIGRMLDMSDIMRMLYSTIDVVVHME-KRKI 313
Cdd:cd19477 82 RIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN*SSSNSAARNIKFESLIEGFKDLIDGIVHINhHKQC 161
|
....
gi 446050741 314 KEIY 317
Cdd:cd19477 162 DEFY 165
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
149-276 |
3.49e-24 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 100.64 E-value: 3.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 149 AFLQTAVEKKRTIVICGETGSGKTVLTRALLKSLHK---DERVIILEDVHEVTVdHVVEAVYMMYGDAGKIGRVsatdaL 225
Cdd:PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVAsapEDRLVILEDTAEIQC-AAENAVALHTSDTVDMARL-----L 208
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 446050741 226 RACMRLTPGRIIMTELRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRI 276
Cdd:PRK13833 209 KSTMRLRPDRIIVGEVRDGAALTLLKAWNTGHPGGVTTIHSNTAMSALRRL 259
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
86-316 |
5.05e-24 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 99.81 E-value: 5.05e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 86 LPPAVIDGTTAVafRKDLAADKNLEQLTSEGIFSDCRKitgskqsltdddfflkelhssekwpAFLQTAVEKKRTIVICG 165
Cdd:PRK13894 103 LPPVVPAPTFAI--RKKAVAIFTLDQYVERGIMTAAQR-------------------------EAIIAAVRAHRNILVIG 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 166 ETGSGKTVLTRALLKSLHK---DERVIILEDVHEV--TVDHVVEavYMMYGDagkigrVSATDALRACMRLTPGRIIMTE 240
Cdd:PRK13894 156 GTGSGKTTLVNAIINEMVIqdpTERVFIIEDTGEIqcAAENYVQ--YHTSID------VNMTALLKTTLRMRPDRILVGE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 241 LRDDAAWDYLKALNTGHPGGVMSTHANSARDAFNRIGLLI---KATPigrmldmSDIMRMLYSTIDVVVHMEK----RKI 313
Cdd:PRK13894 228 VRGPEALDLLMAWNTGHEGGAATLHANNAKAGLDRLKSLIsmhPDAP-------KPIEPLIGEAVHVVVHIARtpggRRI 300
|
...
gi 446050741 314 KEI 316
Cdd:PRK13894 301 QEI 303
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
149-317 |
3.22e-21 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 93.61 E-value: 3.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 149 AFLQTAVEKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHvvEAVYMMY---GDAGKIGRVSATDAL 225
Cdd:COG0630 281 AYLWLLLENGKSVLVAGGTASGKTTLLNALLSFIPPDAKIVTIEDTRELNLPH--ENWISLVtreSFGGEEGDVTMFDLL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 226 RACMRLTPGRIIMTELRDDAAWDYLKALNTGHpgGVMST-HANSARDAFNRigllIKATPIGrmldmsdIMRMLYSTIDV 304
Cdd:COG0630 359 KAALRQRPDYIVVGEVRGEEAYTLFQAMATGH--GVLSTfHADSVESAINR----LTSPPIN-------VPRTLLQALDL 425
|
170 180
....*....|....*....|.
gi 446050741 305 VVHMEK--------RKIKEIY 317
Cdd:COG0630 426 VVFQKRvrvggkrvRRVTSIV 446
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
149-306 |
1.66e-20 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 89.27 E-value: 1.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 149 AFLQTAvekKRTIVICGETGSGKTVLTRALLKSLHK-DERVIILEDVHEVTVDHV----VEAVymmygdagkiGRVSATD 223
Cdd:pfam00437 124 EFLRQP---RGNILVTGPTGSGKTTTLYAALGELNTrDENIVTVEDPVEIQLEGInqvqLNAR----------AGVTFAD 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 224 ALRACMRLTPGRIIMTELRD-DAAWDYLKALNTGHPggVMST-HANSARDAfnrigllikatpIGRMLDMSDIMRMLYST 301
Cdd:pfam00437 191 LLRAILRQDPDRIMVGEIRDlETAEIALQAANTGHL--VLSTlHTNSAAGA------------LTRLQDMGVPPFELASS 256
|
....*
gi 446050741 302 IDVVV 306
Cdd:pfam00437 257 LLLVI 261
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
148-298 |
5.25e-12 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 63.55 E-value: 5.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 148 PAFLQTAVEKKRTIVICGETGSGKTVL----TRALLKSLHKDERVIILEDVHEVTVDHVVEAVYMMYgdAGKIGR--VSA 221
Cdd:cd19516 1 PDLVEALFPREGLVYVAGATGSGKSTLlaaiYRYILENDPPDRKIITYEDPIEFVYDGIKSKHSIIV--QSQIPRhfKSF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 222 TDALRACMRLTPGRIIMTELRD----DAAwdyLKALNTGHPggVMST-HANSARDAFNRiglLIKATP----IGRMLDMS 292
Cdd:cd19516 79 AKAVREALRRKPSLIGVGELRDqetiSAA---VEASLTGHP--VYSTvHTKSVAETIRR---LISLFPpeerDAAAYDLL 150
|
....*.
gi 446050741 293 DIMRML 298
Cdd:cd19516 151 STLRFI 156
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
161-291 |
1.62e-11 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 61.73 E-value: 1.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 161 IVICGETGSGKTVLTRALLKSLHKDERVIIledvhevTVDHVVEavymmYGDAG--------KIGRVSAtDALRACMRLT 232
Cdd:cd01129 14 ILVTGPTGSGKTTTLYAMLRELNGPERNII-------TIEDPVE-----YQIPGinqsqvneKIGLTFA-DALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446050741 233 PgRIIMT-ELRD----DAAwdyLKALNTGHPggVMST-HANSARDAfnrigllikatpIGRMLDM 291
Cdd:cd01129 81 P-DIIMVgEIRDaetaEIA---IRAALTGHL--VLSTlHTNDALGA------------ITRLLDM 127
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
148-276 |
1.56e-07 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 51.38 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 148 PAFLQTAVEKKRTIVICGETGSGKTVLTRALLKSL--HKDERVIILED----VH----------EVTVDhvveavymmyg 211
Cdd:cd01131 11 PVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYIneTRSKHIITIEDpiefVHkhkkslinqrEVGRD----------- 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 212 dagkigRVSATDALRACMRLTPGRIIMTELRD----DAAwdyLKALNTGHPggVMST-HANSARDAFNRI 276
Cdd:cd01131 80 ------TESFAAALRAALREDPDVILVGEMRDletiELA---LTAAETGHL--VFSTlHTNSAAQTIDRI 138
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
161-291 |
1.82e-07 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 52.50 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 161 IVICGETGSGKTVLTRALLKSLHKDERVII-LED--------VHEVTVDHvveavymmygdagKIGRVSAtDALRACMRL 231
Cdd:COG2804 316 ILVTGPTGSGKTTTLYAALNELNTPERNIItVEDpveyqlpgINQVQVNP-------------KIGLTFA-SALRSILRQ 381
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446050741 232 TPGrIIMT-ELRD----DAAwdyLKALNTGHpgGVMST-HANSARDAfnrigllikatpIGRMLDM 291
Cdd:COG2804 382 DPD-VIMVgEIRDletaEIA---VQAALTGH--LVLSTlHTNDAPSA------------ITRLLDM 429
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
148-276 |
5.83e-07 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 50.48 E-value: 5.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 148 PAFLQTAVEKKRTIV-ICGETGSGKTVLTRALLKSL--HKDERVIILED----VH----------EVTVDHVveavymmy 210
Cdd:COG2805 114 PPVLKELAELPRGLVlVTGPTGSGKSTTLAAMIDYIneTRAKHIITIEDpiefVHkhkkslinqrEVGRDTP-------- 185
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446050741 211 gdagkigrvSATDALRACMRLTPGRIIMTELRD----DAAwdyLKALNTGHPggVMST-HANSARDAFNRI 276
Cdd:COG2805 186 ---------SFANALRAALREDPDVILVGEMRDletiEAA---LTAAETGHL--VFATlHTNSAAQTIDRI 242
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
156-204 |
5.75e-05 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 42.52 E-value: 5.75e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 446050741 156 EKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHVVE 204
Cdd:cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
161-230 |
1.56e-04 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 42.47 E-value: 1.56e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446050741 161 IVICGETGSGKTVLTRALLKSLHKDERVIILEDVHeVTVDHVVEAVYMMYG-DAGKIGRVSATDALRACMR 230
Cdd:COG3267 46 VVLTGEVGTGKTTLLRRLLERLPDDVKVAYIPNPQ-LSPAELLRAIADELGlEPKGASKADLLRQLQEFLL 115
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
157-237 |
2.90e-04 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 40.43 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 157 KKRTIVICGETGSGKTVLTRALLKSLHKDE-RVIILEDVHEVTVDHVVEAVYMMYGDAGKIGRVSATDALRACMRLTPGR 235
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGgGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
|
..
gi 446050741 236 II 237
Cdd:smart00382 81 VL 82
|
|
| AAA_7 |
pfam12775 |
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ... |
150-190 |
4.07e-04 |
|
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).
Pssm-ID: 463698 [Multi-domain] Cd Length: 179 Bit Score: 40.45 E-value: 4.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 446050741 150 FLQTAVEKKRTIVICGETGSGKTVLTRALLKSLHKDERVII 190
Cdd:pfam12775 23 LLDLLLKNGKPVLLVGPTGTGKTVIIQNLLRKLDKEKYLPL 63
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
160-203 |
4.11e-04 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 40.26 E-value: 4.11e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 446050741 160 TIVICGETGSGKTVLTRALLKSLHKDERVIILEDVHEVTVDHVV 203
Cdd:pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSV 48
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
161-231 |
4.37e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.63 E-value: 4.37e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446050741 161 IVICGETGSGKTVLTRALLKSLHKDE-RVIILEDVHEVTVDHVVEAVYMMYGDAGKiGRVSATDALRACMRL 231
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRdSVVFVDLPSGTSPKDLLRALLRALGLPLS-GRLSKEELLAALQQL 78
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
163-275 |
1.31e-03 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 40.17 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 163 ICGETGSGKTVLTRALLKSLHK---DERVIILEDVHEvtvdhvveavYMMYGD-------AGKIGR--VSATDALRACMR 230
Cdd:TIGR02525 154 ICGETGSGKSTLAASIYQHCGEtypDRKIVTYEDPIE----------YILGSPddllppaQSQIGRdvDSFANGIRLALR 223
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 446050741 231 LTPGRIIMTELRD----DAAwdyLKALNTGHpgGVMST-HANSARDAFNR 275
Cdd:TIGR02525 224 RAPKIIGVGEIRDletfQAA---VLAGQSGH--FCLGTlHVKSPGEAISR 268
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
151-239 |
1.32e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 39.40 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446050741 151 LQTAVEKKRTIVICGETGSGKT-VLTRALLKSLHKDE--RVIILEDVHEVTVDHVVEAVYMMYGDAGK----IGRVSATD 223
Cdd:smart00487 17 IEALLSGLRDVILAAPTGSGKTlAALLPALEALKRGKggRVLVLVPTRELAEQWAEELKKLGPSLGLKvvglYGGDSKRE 96
|
90
....*....|....*.
gi 446050741 224 ALRACMRLTPGRIIMT 239
Cdd:smart00487 97 QLRKLESGKTDILVTT 112
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
159-195 |
5.09e-03 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 38.43 E-value: 5.09e-03
10 20 30
....*....|....*....|....*....|....*...
gi 446050741 159 RTIVICGETGSGKTVLTRALLKSLHKDE-RVIILeDVH 195
Cdd:COG0433 48 RHILILGATGSGKSNTLQVLLEELSRAGvPVLVF-DPH 84
|
|
| TsaE |
pfam02367 |
Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in ... |
162-188 |
5.57e-03 |
|
Threonylcarbamoyl adenosine biosynthesis protein TsaE; This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).
Pssm-ID: 460540 Cd Length: 127 Bit Score: 36.26 E-value: 5.57e-03
10 20
....*....|....*....|....*....
gi 446050741 162 VIC--GETGSGKTVLTRALLKSLHKDERV 188
Cdd:pfam02367 23 VILlsGDLGAGKTTFTRGLARGLGVTGPV 51
|
|
| PRK11784 |
PRK11784 |
tRNA 2-selenouridine synthase; Provisional |
149-178 |
6.11e-03 |
|
tRNA 2-selenouridine synthase; Provisional
Pssm-ID: 236982 [Multi-domain] Cd Length: 345 Bit Score: 37.89 E-value: 6.11e-03
10 20 30
....*....|....*....|....*....|
gi 446050741 149 AFLQTAVEKKRTIVICGETGSGKTVLTRAL 178
Cdd:PRK11784 132 DTLEEAPAQFPLVVLGGNTGSGKTELLQAL 161
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
154-178 |
7.47e-03 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 37.96 E-value: 7.47e-03
10 20
....*....|....*....|....*
gi 446050741 154 AVEKKRTIVICGETGSGKTVLTRAL 178
Cdd:COG3284 340 LADRDIPVLILGETGTGKELFARAI 364
|
|
| cobW |
pfam02492 |
CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase ... |
160-200 |
7.56e-03 |
|
CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Pssm-ID: 396860 Cd Length: 179 Bit Score: 36.85 E-value: 7.56e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446050741 160 TIVICGETGSGKTVLTRALLKSLHKDERV-IILEDVHEVTVD 200
Cdd:pfam02492 2 VTVITGFLGSGKTTLLNHLLKQNRAGLRIaVIVNEFGETGID 43
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
155-193 |
8.52e-03 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 37.10 E-value: 8.52e-03
10 20 30
....*....|....*....|....*....|....*....
gi 446050741 155 VEKKRTIVICGETGSGKTVLTRALLKSLHKDERVIILED 193
Cdd:cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG 66
|
|
|