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Conserved domains on  [gi|446043982|ref|WP_000121837|]
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MULTISPECIES: 50S ribosomal protein L7ae-like protein [Bacillales]

Protein Classification

ribosomal L7Ae/L30e/S12e/Gadd45 family protein; 60S ribosomal protein L30( domain architecture ID 10012792)

ribosomal L7Ae/L30e/S12e/Gadd45 family protein may be characterized as a K-turn binding protein; K-turns are RNA motifs comprised of a bulge flanked by canonical and noncanonical helices.| 60S ribosomal protein L30 may participate in a key bridging interaction between the large and small ribosomal subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06683 PRK06683
hypothetical protein; Provisional
 1-82 2.26e-43

hypothetical protein; Provisional


:

Pssm-ID: 136002  Cd Length: 82  Bit Score: 135.21  E-value: 2.26e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043982  1 MSYQKVSTAENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASAIGI 80
Cdd:PRK06683  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGI 80


                ..
gi 446043982 81 IS 82
Cdd:PRK06683 81 IS 82
 
Name Accession Description Interval E-value
PRK06683 PRK06683
hypothetical protein; Provisional
 1-82 2.26e-43

hypothetical protein; Provisional


Pssm-ID: 136002  Cd Length: 82  Bit Score: 135.21  E-value: 2.26e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043982  1 MSYQKVSTAENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASAIGI 80
Cdd:PRK06683  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGI 80


                ..
gi 446043982 81 IS 82
Cdd:PRK06683 81 IS 82
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 9-81 6.19e-13

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 58.25  E-value: 6.19e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446043982  9 AENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGiQVGASAIGII 81
Cdd:COG1358  13 AGKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAIT 84
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 4-81 3.07e-08

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 46.43  E-value: 3.07e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446043982   4 QKVSTAENVVVGHKRTLEAIKNGTVKEVVIAEDAD-MRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASAIGII 81
Cdd:pfam01248  8 KKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDpEEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIK 86
 
Name Accession Description Interval E-value
PRK06683 PRK06683
hypothetical protein; Provisional
 1-82 2.26e-43

hypothetical protein; Provisional


Pssm-ID: 136002  Cd Length: 82  Bit Score: 135.21  E-value: 2.26e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043982  1 MSYQKVSTAENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASAIGI 80
Cdd:PRK06683  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGI 80


                ..
gi 446043982 81 IS 82
Cdd:PRK06683 81 IS 82
PRK13602 PRK13602
50S ribosomal protein L7ae-like protein;
1-81 3.81e-26

50S ribosomal protein L7ae-like protein;


Pssm-ID: 184174 [Multi-domain]  Cd Length: 82  Bit Score: 91.38  E-value: 3.81e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043982  1 MSYQKVSTAENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASAIGI 80
Cdd:PRK13602  1 MSYEKVSQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAI 80


                .
gi 446043982 81 I 81
Cdd:PRK13602 81 I 81
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 9-81 6.19e-13

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 58.25  E-value: 6.19e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446043982  9 AENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGiQVGASAIGII 81
Cdd:COG1358  13 AGKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAIT 84
PRK13600 PRK13600
putative ribosomal protein L7Ae-like; Provisional
 1-82 1.44e-08

putative ribosomal protein L7Ae-like; Provisional


Pssm-ID: 184172  Cd Length: 84  Bit Score: 46.77  E-value: 1.44e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043982  1 MSYQKVS--TAENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASAI 78
Cdd:PRK13600  1 MSKEKVArfNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80


                ....
gi 446043982 79 GIIS 82
Cdd:PRK13600 81 ALIK 84
PRK13601 PRK13601
putative L7Ae-like ribosomal protein; Provisional
 13-77 2.54e-08

putative L7Ae-like ribosomal protein; Provisional


Pssm-ID: 184173  Cd Length: 82  Bit Score: 46.13  E-value: 2.54e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446043982 13 VVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASA 77
Cdd:PRK13601 10 VVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAA 74
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 4-81 3.07e-08

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 46.43  E-value: 3.07e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446043982   4 QKVSTAENVVVGHKRTLEAIKNGTVKEVVIAEDAD-MRLTHAIIRVAMQYNVPITKVESVRKLGKASGIQVGASAIGII 81
Cdd:pfam01248  8 KKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDpEEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIK 86
PRK01018 PRK01018
50S ribosomal protein L30e; Reviewed
 11-81 1.47e-04

50S ribosomal protein L30e; Reviewed


Pssm-ID: 179205 [Multi-domain]  Cd Length: 99  Bit Score: 36.87  E-value: 1.47e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446043982 11 NVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVE-SVRKLGKASGIQVGASAIGII 81
Cdd:PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEgSSVELGTLCGKPFTVSALAIV 87
PRK07714 PRK07714
YlxQ family RNA-binding protein;
9-70 1.98e-04

YlxQ family RNA-binding protein;


Pssm-ID: 236077  Cd Length: 100  Bit Score: 36.68  E-value: 1.98e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446043982   9 AENVVVGHKRTLEAIKNGTVKEVVIAEDADMRLTHAIIRVAMQYNVPITKVESVRKLGKASG 70
Cdd:PRK07714  16 ARKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIG 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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