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Conserved domains on  [gi|446032092|ref|WP_000109947|]
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MULTISPECIES: Sec-independent protein translocase subunit TatC [Shigella]

Protein Classification

preprotein translocase subunit TatC( domain architecture ID 10013680)

preprotein translocase subunit TatC is part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10921 PRK10921
Sec-independent protein translocase subunit TatC;
1-258 2.30e-175

Sec-independent protein translocase subunit TatC;


:

Pssm-ID: 182840  Cd Length: 258  Bit Score: 482.72  E-value: 2.30e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   1 MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSL 80
Cdd:PRK10921   1 MAVEDTQPLISHLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTPIKLTFMVSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092  81 ILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA 160
Cdd:PRK10921  81 ILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092 161 LFMAFGVSFEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG 240
Cdd:PRK10921 161 LFMAFGVSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG 240
                        250
                 ....*....|....*...
gi 446032092 241 RNREEENDAEAESEKTEE 258
Cdd:PRK10921 241 RRREEENDAEAESEKTEE 258
 
Name Accession Description Interval E-value
PRK10921 PRK10921
Sec-independent protein translocase subunit TatC;
1-258 2.30e-175

Sec-independent protein translocase subunit TatC;


Pssm-ID: 182840  Cd Length: 258  Bit Score: 482.72  E-value: 2.30e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   1 MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSL 80
Cdd:PRK10921   1 MAVEDTQPLISHLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTPIKLTFMVSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092  81 ILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA 160
Cdd:PRK10921  81 ILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092 161 LFMAFGVSFEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG 240
Cdd:PRK10921 161 LFMAFGVSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG 240
                        250
                 ....*....|....*...
gi 446032092 241 RNREEENDAEAESEKTEE 258
Cdd:PRK10921 241 RRREEENDAEAESEKTEE 258
TatC COG0805
Twin-arginine protein secretion pathway component TatC [Intracellular trafficking, secretion, ...
4-247 3.22e-108

Twin-arginine protein secretion pathway component TatC [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440568  Cd Length: 249  Bit Score: 312.43  E-value: 3.22e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   4 EDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILS 83
Cdd:COG0805    6 DGEMPLLEHLEELRKRLIRSLIAFLVGFIVGFFFADPIYDFLAAPLKAALPEGVKLIATGPTEPFFTYLKVALLAGLILA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092  84 APVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFM 163
Cdd:COG0805   86 LPVILYQLWAFIAPGLYRHERRLALPFVLASVLLFLAGAAFAYFVVLPLAFKFLLSFAPEGVEPLLDISEYLSFVLKLLL 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092 164 AFGVSFEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKGRNR 243
Cdd:COG0805  166 AFGLAFELPVVLVLLNRLGIVTPETLRKKRRYAIVGIFVLAAILTPPDVISQLLLAIPLILLYELSILIARLVERRRAKR 245

                 ....
gi 446032092 244 EEEN 247
Cdd:COG0805  246 EAAE 249
tatC TIGR00945
Twin arginine targeting (Tat) protein translocase TatC; This model represents the TatC ...
9-226 7.04e-87

Twin arginine targeting (Tat) protein translocase TatC; This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273355  Cd Length: 215  Bit Score: 257.15  E-value: 7.04e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092    9 LITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQlpqGSTMIATDVASPFFTPIKLTFMVSLILSAPVIL 88
Cdd:TIGR00945   1 LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPLLAL---GVTFIATSPTEPFFTYIKISLIVGIILASPVIL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   89 YQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVS 168
Cdd:TIGR00945  78 YQIWAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFLLTLGADVVEPLLSIDQYFEFVLKLLFSFGVA 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 446032092  169 FEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLF 226
Cdd:TIGR00945 158 FQVPVLQVLLGKLGIVTPEQLRSKRRYVIVGAFVIGAILTPPDPLSQILLAIPLLLLY 215
TatC pfam00902
Sec-independent protein translocase protein (TatC); The bacterial Tat system has a remarkable ...
12-221 5.09e-83

Sec-independent protein translocase protein (TatC); The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.


Pssm-ID: 459989  Cd Length: 210  Bit Score: 247.34  E-value: 5.09e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   12 HLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKqlPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQV 91
Cdd:pfam00902   2 HLEELRKRLIRSLIAIVVGFIVAFFFAEPIFDFLLAPLKA--PEGVKLIATGPTEAFFTYLKVSLLAGLILALPVILYQL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   92 WAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAN-TAPEGVQVSTDIASYLSFVMALFMAFGVSFE 170
Cdd:pfam00902  80 WAFIAPGLYKHERRYVLPFVFASVLLFLLGAAFAYFVVFPLALRFLLGfGVSAGVVPMLSISEYLSFVLTLLLAFGLAFE 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 446032092  171 VPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIP 221
Cdd:pfam00902 160 LPLVLVLLARLGIVTPETLRKKRRYAIVGIFVVAAILTPPDPFSQLLLAIP 210
 
Name Accession Description Interval E-value
PRK10921 PRK10921
Sec-independent protein translocase subunit TatC;
1-258 2.30e-175

Sec-independent protein translocase subunit TatC;


Pssm-ID: 182840  Cd Length: 258  Bit Score: 482.72  E-value: 2.30e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   1 MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSL 80
Cdd:PRK10921   1 MAVEDTQPLISHLIELRKRLLNCIIAVLVIFLALVYFANDIYHLVSAPLIKQLPQGATMIATDVASPFFTPIKLTFMVSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092  81 ILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA 160
Cdd:PRK10921  81 ILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092 161 LFMAFGVSFEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG 240
Cdd:PRK10921 161 LFMAFGVSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKG 240
                        250
                 ....*....|....*...
gi 446032092 241 RNREEENDAEAESEKTEE 258
Cdd:PRK10921 241 RRREEENDAEAESEKTEE 258
TatC COG0805
Twin-arginine protein secretion pathway component TatC [Intracellular trafficking, secretion, ...
4-247 3.22e-108

Twin-arginine protein secretion pathway component TatC [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440568  Cd Length: 249  Bit Score: 312.43  E-value: 3.22e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   4 EDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILS 83
Cdd:COG0805    6 DGEMPLLEHLEELRKRLIRSLIAFLVGFIVGFFFADPIYDFLAAPLKAALPEGVKLIATGPTEPFFTYLKVALLAGLILA 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092  84 APVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFM 163
Cdd:COG0805   86 LPVILYQLWAFIAPGLYRHERRLALPFVLASVLLFLAGAAFAYFVVLPLAFKFLLSFAPEGVEPLLDISEYLSFVLKLLL 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092 164 AFGVSFEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKGRNR 243
Cdd:COG0805  166 AFGLAFELPVVLVLLNRLGIVTPETLRKKRRYAIVGIFVLAAILTPPDVISQLLLAIPLILLYELSILIARLVERRRAKR 245

                 ....
gi 446032092 244 EEEN 247
Cdd:COG0805  246 EAAE 249
tatC TIGR00945
Twin arginine targeting (Tat) protein translocase TatC; This model represents the TatC ...
9-226 7.04e-87

Twin arginine targeting (Tat) protein translocase TatC; This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273355  Cd Length: 215  Bit Score: 257.15  E-value: 7.04e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092    9 LITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQlpqGSTMIATDVASPFFTPIKLTFMVSLILSAPVIL 88
Cdd:TIGR00945   1 LFEHLEELRKRLLISLIAFLVAFFICFYFSKPIIELLQAPLLAL---GVTFIATSPTEPFFTYIKISLIVGIILASPVIL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   89 YQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVS 168
Cdd:TIGR00945  78 YQIWAFILPGLYEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFLLTLGADVVEPLLSIDQYFEFVLKLLFSFGVA 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 446032092  169 FEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLF 226
Cdd:TIGR00945 158 FQVPVLQVLLGKLGIVTPEQLRSKRRYVIVGAFVIGAILTPPDPLSQILLAIPLLLLY 215
TatC pfam00902
Sec-independent protein translocase protein (TatC); The bacterial Tat system has a remarkable ...
12-221 5.09e-83

Sec-independent protein translocase protein (TatC); The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.


Pssm-ID: 459989  Cd Length: 210  Bit Score: 247.34  E-value: 5.09e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   12 HLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKqlPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQV 91
Cdd:pfam00902   2 HLEELRKRLIRSLIAIVVGFIVAFFFAEPIFDFLLAPLKA--PEGVKLIATGPTEAFFTYLKVSLLAGLILALPVILYQL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   92 WAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAN-TAPEGVQVSTDIASYLSFVMALFMAFGVSFE 170
Cdd:pfam00902  80 WAFIAPGLYKHERRYVLPFVFASVLLFLLGAAFAYFVVFPLALRFLLGfGVSAGVVPMLSISEYLSFVLTLLLAFGLAFE 159
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 446032092  171 VPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIP 221
Cdd:pfam00902 160 LPLVLVLLARLGIVTPETLRKKRRYAIVGIFVVAAILTPPDPFSQLLLAIP 210
TatC-Arch TIGR01912
Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade; This model represents ...
34-237 6.16e-35

Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade; This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).


Pssm-ID: 162597  Cd Length: 237  Bit Score: 125.20  E-value: 6.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   34 LVYFANDIYHLVSAPLIKQLPQ--GSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLL 111
Cdd:TIGR01912  29 LTIFTPFIIAALRESILPLLAYhvIATLIAPSPFAALELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPHERRQVRLLG 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092  112 VSSSLLFYIGMAFAYFVVFPLAFGFLANTA-PEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSSEDLR 190
Cdd:TIGR01912 109 VIAVGLFAFGALFAYWVIFPLIFQILFEFAsPLGLSAIMDIRKYTSFALKLILSFGLAFETPVVLVFLTRLGVVSASTLV 188
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 446032092  191 KKRPYVLVGAFVVGMLLTP-PDVFSQTLLAIPMYCLFEIGVFFSRFYV 237
Cdd:TIGR01912 189 DYWRVIILVVLVFGAVITPdPDVVSMILLAIPLIALYGLALVISKRVE 236
tatC CHL00182
Sec-independent translocase component C; Provisional
8-236 2.25e-29

Sec-independent translocase component C; Provisional


Pssm-ID: 177084 [Multi-domain]  Cd Length: 249  Bit Score: 110.84  E-value: 2.25e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092   8 PLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIkqlpqGSTMIATDVASPFFTPIKLTFMVSLILSAPVI 87
Cdd:CHL00182  23 PLSEHLEELRQRLFLSLSILLLLTIVCFINVKSIVEILQAPAK-----GIKFLQLSPGEYFFSSIKISFYTGLLISSPFI 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092  88 LYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGV 167
Cdd:CHL00182  98 IYQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINYGSDVVEPLWSFDQYFDFILVLFFSTGL 177
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446032092 168 SFEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPP-DVFSQTLLAIPMYCLFEIGVFFSRFY 236
Cdd:CHL00182 178 AFQIPIIQIVLGLLNIISSKQMLSAWRYVILVSTIVGAILTPStDPLTQLLLSLAILLLYFSGVIVLKLL 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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