|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
9-310 |
0e+00 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 609.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 9 LPPDPHMCNGDEKQTRSPLSLYSEYQRLDVELRPPHRMASSHWHGQVEVNVPFDGDVEYLINNEVVQIKQGHITLFWACT 88
Cdd:PRK10371 1 MNTDTFMCSSDEKQTRSPLSLYSEYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 89 PHQLTRPGNCRQMAIFSLPMHLFLSWPLDRDLINHVTHGMVVKSLATQQLSTFEVLRWQQETSSPNEQIRQLAIDEIGLM 168
Cdd:PRK10371 81 PHQLTDPGNCRSMAIFNLPMHLFLSWPLDKDLINHVTHGMVIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 169 LKRFSLSGWQPILLNKTSRTHKNSVSRHAQFYVSQMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYI 248
Cdd:PRK10371 161 LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYI 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446029137 249 TAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRKLSQQRRQTMPG 310
Cdd:PRK10371 241 TAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYRKLSQQRRQTFPG 302
|
|
| cupin_MelR-like_N |
cd06997 |
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin ... |
36-113 |
1.09e-45 |
|
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including Escherichia coli MelR, a transcription factor that controls melibiose utilization. MelR is encoded by the melR gene and is essential for melibiose-dependent triggering of the melAB operon that encodes products needed for melibiose catabolism and transport. Expression of melR is autoregulated by MelR, which represses the melR promoter by binding to a target that overlaps the transcript start. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380401 Cd Length: 78 Bit Score: 149.45 E-value: 1.09e-45
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446029137 36 LDVELRPPHRMASSHWHGQVEVNVPFDGDVEYLINNEVVQIKQGHITLFWACTPHQLTRPGNCRQMAIFSLPMHLFLS 113
Cdd:cd06997 1 LQIEHRQPHIMPTPHWHGQVEVNIPFDGDVEYLINEHAVSLNAGHIGLFWGGLPHQLTDTGDCAIMAIFNLPLHHFFS 78
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
216-298 |
2.14e-24 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 94.16 E-value: 2.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 216 LTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQ 295
Cdd:smart00342 2 LTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81
|
...
gi 446029137 296 QYR 298
Cdd:smart00342 82 EYR 84
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
201-305 |
1.94e-22 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 95.89 E-value: 1.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 201 VSQMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLsDTDKTILDVALTAGFRSSS 280
Cdd:COG2169 86 VARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLL-QTGLSVTDAAYAAGFGSLS 164
|
90 100
....*....|....*....|....*
gi 446029137 281 RFYSTFSKFVGMSPQQYRKLSQQRR 305
Cdd:COG2169 165 RFYEAFKKLLGMTPSAYRRGGAGAA 189
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
221-299 |
2.74e-17 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 74.93 E-value: 2.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 221 VAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALL-SDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRK 299
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
9-310 |
0e+00 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 609.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 9 LPPDPHMCNGDEKQTRSPLSLYSEYQRLDVELRPPHRMASSHWHGQVEVNVPFDGDVEYLINNEVVQIKQGHITLFWACT 88
Cdd:PRK10371 1 MNTDTFMCSSDEKQTRSPLSLYSEYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 89 PHQLTRPGNCRQMAIFSLPMHLFLSWPLDRDLINHVTHGMVVKSLATQQLSTFEVLRWQQETSSPNEQIRQLAIDEIGLM 168
Cdd:PRK10371 81 PHQLTDPGNCRSMAIFNLPMHLFLSWPLDKDLINHVTHGMVIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 169 LKRFSLSGWQPILLNKTSRTHKNSVSRHAQFYVSQMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYI 248
Cdd:PRK10371 161 LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYI 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446029137 249 TAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRKLSQQRRQTMPG 310
Cdd:PRK10371 241 TAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYRKLSQQRRQTFPG 302
|
|
| cupin_MelR-like_N |
cd06997 |
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin ... |
36-113 |
1.09e-45 |
|
AraC/XylS family transcriptional regulators similar to Escherichia coli MelR, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including Escherichia coli MelR, a transcription factor that controls melibiose utilization. MelR is encoded by the melR gene and is essential for melibiose-dependent triggering of the melAB operon that encodes products needed for melibiose catabolism and transport. Expression of melR is autoregulated by MelR, which represses the melR promoter by binding to a target that overlaps the transcript start. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380401 Cd Length: 78 Bit Score: 149.45 E-value: 1.09e-45
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446029137 36 LDVELRPPHRMASSHWHGQVEVNVPFDGDVEYLINNEVVQIKQGHITLFWACTPHQLTRPGNCRQMAIFSLPMHLFLS 113
Cdd:cd06997 1 LQIEHRQPHIMPTPHWHGQVEVNIPFDGDVEYLINEHAVSLNAGHIGLFWGGLPHQLTDTGDCAIMAIFNLPLHHFFS 78
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
216-298 |
2.14e-24 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 94.16 E-value: 2.14e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 216 LTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQ 295
Cdd:smart00342 2 LTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81
|
...
gi 446029137 296 QYR 298
Cdd:smart00342 82 EYR 84
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
201-305 |
1.94e-22 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 95.89 E-value: 1.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 201 VSQMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLsDTDKTILDVALTAGFRSSS 280
Cdd:COG2169 86 VARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLL-QTGLSVTDAAYAAGFGSLS 164
|
90 100
....*....|....*....|....*
gi 446029137 281 RFYSTFSKFVGMSPQQYRKLSQQRR 305
Cdd:COG2169 165 RFYEAFKKLLGMTPSAYRRGGAGAA 189
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
195-305 |
5.27e-20 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 87.53 E-value: 5.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 195 RHAQFYVSQMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTA 274
Cdd:COG2207 148 LLLLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYEL 227
|
90 100 110
....*....|....*....|....*....|.
gi 446029137 275 GFRSSSRFYSTFSKFVGMSPQQYRKLSQQRR 305
Cdd:COG2207 228 GFSSQSHFSRAFKKRFGVTPSEYRKRLRARA 258
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
201-307 |
6.81e-18 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 82.51 E-value: 6.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 201 VSQMLGFIADNYDQALTINDVAEHVklnanyAMG------IFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTA 274
Cdd:COG4977 212 LARAQAWMEANLEEPLSVDELARRA------GMSprtlerRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAAC 285
|
90 100 110
....*....|....*....|....*....|...
gi 446029137 275 GFRSSSRFYSTFSKFVGMSPQQYRKLSQQRRQT 307
Cdd:COG4977 286 GFGSASHFRRAFRRRFGVSPSAYRRRFRARAAA 318
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
221-299 |
2.74e-17 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 74.93 E-value: 2.74e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 221 VAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALL-SDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRK 299
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
236-304 |
3.21e-07 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 50.82 E-value: 3.21e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446029137 236 FQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRKLSQQR 304
Cdd:PRK13502 213 FRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQS 281
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
193-299 |
5.36e-07 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 50.35 E-value: 5.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 193 VSRHAQFYVSQMLGFIADNYDQALTINDVAEHvklnANYAMGIFQR----VMQLTMKQYITAMRINHVRALLSDTDKTIL 268
Cdd:PRK09393 212 VASRESDRLGPLIDWMRAHLAEPHTVASLAAR----AAMSPRTFLRrfeaATGMTPAEWLLRERLARARDLLESSALSID 287
|
90 100 110
....*....|....*....|....*....|.
gi 446029137 269 DVALTAGFRSSSRFYSTFSKFVGMSPQQYRK 299
Cdd:PRK09393 288 QIAERAGFGSEESLRHHFRRRAATSPAAYRK 318
|
|
| PRK15435 |
PRK15435 |
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada; |
213-299 |
5.69e-07 |
|
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;
Pssm-ID: 185333 [Multi-domain] Cd Length: 353 Bit Score: 50.18 E-value: 5.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 213 DQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDkTILDVALTAGFRSSSRFYSTFSKFVGM 292
Cdd:PRK15435 97 ETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLREALAKGE-SVTTSILNAGFPDSSSYYRKADETLGM 175
|
....*..
gi 446029137 293 SPQQYRK 299
Cdd:PRK15435 176 TAKQFRH 182
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
174-304 |
6.38e-07 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 50.10 E-value: 6.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 174 LSGWQPILLNKTSRTHKNSVSRHAQFYVSQMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRI 253
Cdd:PRK13500 181 LFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRV 260
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 446029137 254 NHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRKLSQQR 304
Cdd:PRK13500 261 CHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQK 311
|
|
| PRK10296 |
PRK10296 |
DNA-binding transcriptional regulator ChbR; Provisional |
237-299 |
1.02e-06 |
|
DNA-binding transcriptional regulator ChbR; Provisional
Pssm-ID: 182362 [Multi-domain] Cd Length: 278 Bit Score: 49.37 E-value: 1.02e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446029137 237 QRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRK 299
Cdd:PRK10296 210 RRYYGKTPMQIINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGSYRK 272
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
125-304 |
1.04e-06 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 49.13 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 125 THGMVVKSLATQQLStfevlRWQQETSSPNEQIRQLAIDEIGLMLKRFSLSGwqpillnktSRTHKNSVSRHAQFYVSQM 204
Cdd:PRK13501 120 TQGMAQARPIIQQLA-----QESRKTDSWSIQLTEVLLLQLAIVLKRHRYRA---------EQAHLLPDGEQLDLIMSAL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 205 LGFIADNYDQAltinDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYS 284
Cdd:PRK13501 186 QQSLGAYFDMA----DFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSNYFSA 261
|
170 180
....*....|....*....|
gi 446029137 285 TFSKFVGMSPQQYRKLSQQR 304
Cdd:PRK13501 262 VFTREAGMTPRDYRQRFIRS 281
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
207-298 |
1.14e-06 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 46.46 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 207 FIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTF 286
Cdd:PRK10219 13 WIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVF 92
|
90
....*....|..
gi 446029137 287 SKFVGMSPQQYR 298
Cdd:PRK10219 93 RRQFDRTPSDYR 104
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
208-249 |
1.59e-06 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 44.07 E-value: 1.59e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446029137 208 IADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYIT 249
Cdd:pfam00165 1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
|
|
| PRK11511 |
PRK11511 |
MDR efflux pump AcrAB transcriptional activator MarA; |
186-298 |
2.32e-06 |
|
MDR efflux pump AcrAB transcriptional activator MarA;
Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 46.25 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 186 SRTHKNSVSRHAqfyvsqMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDK 265
Cdd:PRK11511 2 SRRNTDAITIHS------ILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNE 75
|
90 100 110
....*....|....*....|....*....|...
gi 446029137 266 TILDVALTAGFRSSSRFYSTFSKFVGMSPQQYR 298
Cdd:PRK11511 76 PILYLAERYGFESQQTLTRTFKNYFDVPPHKYR 108
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
262-299 |
2.43e-06 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 43.68 E-value: 2.43e-06
10 20 30
....*....|....*....|....*....|....*...
gi 446029137 262 DTDKTILDVALTAGFrSSSRFYSTFSKFVGMSPQQYRK 299
Cdd:pfam00165 6 STNLTIADIADELGF-SRSYFSRLFKKYTGVTPSQYRH 42
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
207-302 |
7.48e-06 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 46.51 E-value: 7.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 207 FIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTF 286
Cdd:PRK10572 191 YISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVF 270
|
90
....*....|....*.
gi 446029137 287 SKFVGMSPQQYRKLSQ 302
Cdd:PRK10572 271 KKCTGASPSEFRARCE 286
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
203-304 |
8.21e-05 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 43.51 E-value: 8.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446029137 203 QMLGFIADNYDQALTINDVAEHVKLNAnyamgifqRVMQLTMKQ--------YITAMRINHVRALLSDTDKTILDVALTA 274
Cdd:PRK13503 175 QLLAWLEDHFAEEVNWEALADQFSLSL--------RTLHRQLKQqtgltpqrYLNRLRLLKARHLLRHSDASVTDIAYRC 246
|
90 100 110
....*....|....*....|....*....|
gi 446029137 275 GFRSSSRFYSTFSKFVGMSPqqyRKLSQQR 304
Cdd:PRK13503 247 GFGDSNHFSTLFRREFSWSP---RDIRQGR 273
|
|
| PRK09978 |
PRK09978 |
DNA-binding transcriptional regulator GadX; Provisional |
238-303 |
5.61e-04 |
|
DNA-binding transcriptional regulator GadX; Provisional
Pssm-ID: 137624 [Multi-domain] Cd Length: 274 Bit Score: 40.68 E-value: 5.61e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446029137 238 RVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRKLSQQ 303
Cdd:PRK09978 180 REEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQ 245
|
|
| |
